Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsARC_01g0024780 | OGI:01076310 | 3/16 | ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | Chr01:24918012-24918442 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | ATGCAGCAGCTCCGACTCCACCTAAGCGCTAAAGCTCTAGCACAACAAAGGGCCAAGCACCCCTCTCCATACTCGTCACTACGATAGGTTCACTAAGACGCAGGGCACTTGAAGCACAAGCAACAAACAAGGAGGACCAACTTCGCGGACGAACACAACTCCTCAACCATCTAAAGACTCCACGACCAAGGTCTGGAAGCAGACCGGCCAACAGAAGAGAGGAGCATCAAGGAAGGTGAGGAGGTTTGCCTCGCCGGAAGAGGAACTGAAAGATGAAGTCAGGACAACAGAGACATCGTAGTCTTCCATGTTCCGACGAGATCAAGGTGGAGGCATCTCCACCAAGAATCGACGGGCTTCTCGGGAACACCCCTTGCAACTGCGACGATCACTTCCAACTTTGCCACCAACACAGAGAAGAGCTAGGGTGA
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| CDS seq | ATGCAGCAGCTCCGACTCCACCTAAGCGCTAAAGCTCTAGCACAACAAAGGGCCAAGCACCCCTCTCCATACTCCACAAGCAACAAACAAGGAGGACCAACTTCGCGGACGAACACAACTCCTCAACCATCTAAAGACTCCACGACCAAGGTCTGGAAGCAGACCGGCCAACAGAAGAGAGGAGCATCAAGGAAGGTGAGGAGGTTTGCCTCGCCGGAAGAGGAACTGAAAGATGAAGTCAGGACAACAGAGACATCTCTTCCATGTTCCGACGAGATCAAGGTGGAGGCATCTCCACCAAGAATCGACGGGCTTCTCGGGAACACCCCTTGCAACTGCGACGATCACTTCCAACTTTGCCACCAACACAGAGAAGAGCTAGGGTGA |
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| Protein seq | MQQLRLHLSAKALAQQRAKHPSPYSTSNKQGGPTSRTNTTPQPSKDSTTKVWKQTGQQKRGASRKVRRFASPEEELKDEVRTTETSLPCSDEIKVEASPPRIDGLLGNTPCNCDDHFQLCHQHREELG |
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| Function | - | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsARC_01g0024780 | OsARC_01g0024780.01 | Chr01 | 24918012 | 24918442 | + | NAM | ||
| CDS seq | ATGCAGCAGCTCCGACTCCACCTAAGCGCTAAAGCTCTAGCACAACAAAGGGCCAAGCACCCCTCTCCATACTCCACAAGCAACAAACAAGGAGGACCAACTTCGCGGACGAACACAACTCCTCAACCATCTAAAGACTCCACGACCAAGGTCTGGAAGCAGACCGGCCAACAGAAGAGAGGAGCATCAAGGAAGGTGAGGAGGTTTGCCTCGCCGGAAGAGGAACTGAAAGATGAAGTCAGGACAACAGAGACATCTCTTCCATGTTCCGACGAGATCAAGGTGGAGGCATCTCCACCAAGAATCGACGGGCTTCTCGGGAACACCCCTTGCAACTGCGACGATCACTTCCAACTTTGCCACCAACACAGAGAAGAGCTAGGGTGA
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| Protein seq | MQQLRLHLSAKALAQQRAKHPSPYSTSNKQGGPTSRTNTTPQPSKDSTTKVWKQTGQQKRGASRKVRRFASPEEELKDEVRTTETSLPCSDEIKVEASPPRIDGLLGNTPCNCDDHFQLCHQHREELG |
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.0 | 0.0 | None |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| Nipponbare | IRGSP 1.0 | MSU | NA | NA | NA | NA | NA |
| Nipponbare | IRGSP 1.0 | RAP-db | NA | NA | NA | NA | NA |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_01g0002220 | SBH | 0.0 | 0.0 | 0.0 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_01g0002100 | SBH | 0.0 | 0.0 | 0.0 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_01g0002250 | SBH | 0.0 | 0.0 | 0.0 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_01g0002170 | SBH | 0.0 | 0.0 | 0.0 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_01G0413800 | RBH | 0 | 0 | 0 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_01G0402200 | RBH | 0.022047 | 0 | 0 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_01g0002180 | SBH | 0.0 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_01g0002260 | SBH | 0.0 | 0.0 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_01g0002190 | SBH | 0.0 | 0.0 | 0.0 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_01g0002120 | SBH | 0.0 | 0.0 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_01g0021370 | SBH | 4.702482 | 55.199528 | 17.942265 |
