Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsARC_01g0023610 | OGI:01013090 | 16/16 | ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | Chr01:23924402-23927313 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | atggctattttgtcaggtaaacattttgagtactttttttcttcttaaatctgtttttatttgcattttctccacacactattatgcaattgtacagttgaattattcaggagtatgatgaactgtttatattctctcagatggaacaaagcagctgaatgagaatcaagctatccaaaccatgattttgagtggaagcacatcgctgaaccggtcatgcaagtttacaccgaaacaactgatgggtcctccatagagccaaaggaaagtgctctattatggcattatctggatgcagaccatgacttcggatggactgggctgaatatgggctcaaaaatctttggacaaaattacccctcactaatgataattaagtgctaatctcccttttaatcacagccgcttattagctttaactttcgtgcaagttttttttcgagcatagaagcacaaaccaggaagcaaatcctaatctaccttcaatctggaccccacccatttgtgtgacgtgcgtatacgcacgtacaccgtagaccgtaccatctccttttcctattcttttctcttcattctattatataaaaacatttaagcaactatttctttagaaacacataacaaaaccaaacactcacaacgcacgcatactcatcccctacgaatgcacatacgtatactctatccctatgagcaactatagtattttcttaagaaacagaacaaaaccaaacactcacaacgctcgcatactcatcctctacaaatgcacatacgtatactctatccctataaacacattcgaaagcatttaaatcatacatctaatcttatatgcttatgttgttatatttatagtatctaaatcatgatcggcctatgttgctagattatttatgattaataattttacagttaaaaaccatatttactataagtatgtcattattatggataggtttatatctgaaatagtaaaaccctataattatcttaaagaaaaaattcatctcccgaaatcacacgatccatttatctctttatattattttacatttagaaaacaatgttcactgtaattaaaattttcatatgtcactttaggggttatattttctaactttaccgttacattcaaataattacgaacttatgaaaaattaataatgatatagatttttatcgttgtatataactgcataataattaaattagatctataatgctaaagtaaaatggcaaaaggactaaatcgaattatttggatagaatctaataagtttgtaaaaaaattagttcttactttcttacaaaagatgtctttgttaatttatatgcaagtatgtaataacttgcaccaatttgaaccaaccaaaagggtgactaacttggttctacaaatgaaacacatttattaatgataatagtttaataggatttgtttaaaaagccactaaacattcaactaaataagaaacaccttacatttaagttagacacgttttctaaacaaactaaatataactctatactgaagagatcatagatagtttttatagggatgtgttaaatattactattttgaaaggtaacaaatagtttggaaaagttatctaagcaatgtgatgaagaaaatttatagagaaatagtggttttcatggtgggtatcatccggttgatatcccgtctattaaagttttttaaacgaaatctatcatatatgcccacgcaacgcgtgggctacctttctagtttaaataaatactatagattaagtatatcataaaaaacaaggtttttctttattcactcatatatatactcatagatatgtaagtatgtaaaaattacgtgagtatgaaccaattagaaggaggggcagctctatggtacaaataaaacatatttattgacaataataatttttcaggatttattaaaaaatagagcacctaaacattcaaattaaaatgaaaagcaccttatttttaatttacacttaatttgttagatatttctttaaacaaactaagtcaacctccttacaagataatgaaaattgttataattaatttcttatagatatgaagtaaatattgtagtttaaagctaacgaacaacttgaaaaatttatacaagcaatgctgatgaagaaaatttatgaagaaataattattttgaagcgtggtaggtgttatccgattgatattctgccattataaatttcctaaagacaatattcgatatatgcccgcgcattggtgcgggttatcttcatagttaattagagagcgacgacttggactagtaagtcaacaaccaagagcacatccagagttccagactgactcggagtaaagatatatagggatgaaactgctcaattcaataacatcaggagtcatgcatagctgttagtaccagttagccagacaaagttgctgatctgcaccagctcgagcagaaatccacaaaaaacagcaaacaatgcacacgctccatgtctcctgcatccaactagccatttgtgctgttcttgctcgctcaaacagagtgccccaatggaacatctgcctatcatccaaatgaaacgggcatcaccaccgagaggtcagctcttctggccttcagagcaggtttattagaccctgcaaacctcctctcgtcatgggagggtgacggctgctgccgatggaagggcgtcgggtgcggcaacagaaccggccgcatcgtcaagctcgctctccaaggctccgatttcggccaaaatattatcagtaagcaggggatgggaggacacataagtgattcactctgtttgatttacatcacctgcagtatctcgacctcagctgcaacacgttcagtgccctacaagtaccagagttcctatcttcgctgcgcaacttga
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| CDS seq | atggctattttgtcagagtgccccaatggaacatctgcctatcatccaaatgaaacgggcatcaccaccgagaggtcagctcttctggccttcagagcaggtttattagaccctgcaaacctcctctcgtcatgggagggtgacggctgctgccgatggaagggcgtcgggtgcggcaacagaaccggccgcatcgtcaagctcgctctccaaggctccgatttcggccaaaatattatcagtaagcaggggatgggaggacacataagtgattcactctgtttgatttacatcacctgcagtatctcgacctcagctgcaacacgttcagtgccctacaagtaccagagttcctatcttcgctgcgcaacttga |
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| Protein seq | MAILSECPNGTSAYHPNETGITTERSALLAFRAGLLDPANLLSSWEGDGCCRWKGVGCGNRTGRIVKLALQGSDFGQNIISKQGMGGHISDSLCLIYITCSISTSAATRSVPYKYQSSYLRCAT |
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| Function | - | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsARC_01g0023610 | OsARC_01g0023610.01 | Chr01 | 23924402 | 23927313 | + | NAM | ||
| CDS seq | atggctattttgtcagagtgccccaatggaacatctgcctatcatccaaatgaaacgggcatcaccaccgagaggtcagctcttctggccttcagagcaggtttattagaccctgcaaacctcctctcgtcatgggagggtgacggctgctgccgatggaagggcgtcgggtgcggcaacagaaccggccgcatcgtcaagctcgctctccaaggctccgatttcggccaaaatattatcagtaagcaggggatgggaggacacataagtgattcactctgtttgatttacatcacctgcagtatctcgacctcagctgcaacacgttcagtgccctacaagtaccagagttcctatcttcgctgcgcaacttga
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| Protein seq | MAILSECPNGTSAYHPNETGITTERSALLAFRAGLLDPANLLSSWEGDGCCRWKGVGCGNRTGRIVKLALQGSDFGQNIISKQGMGGHISDSLCLIYITCSISTSAATRSVPYKYQSSYLRCAT |
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.0 | 0.0 | None |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_01g0601675 | SBH | 0.227110 | 0.0 | 0.185028 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os01g41770 | SBH | 0.102326 | 0.0 | 0.047600 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os01g0601675 | SBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_01g0024340 | SBH | 0.095513 | 0.0 | 0.317801 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_01g0023940 | SBH | 0.0 | 0.0 | 0.0 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_01g0024240 | RBH | 0.0 | 0.0 | 0.0 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_01g0023590 | SBH | 0.0 | 0.0 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_01g0023360 | SBH | 0.0 | 0.0 | 0.0 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_01G0395100 | SBH | 0 | 0 | 0 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_01g0023280 | SBH | 0.0 | 0.0 | 0.0 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_01G0385300 | SBH | 5.83854 | 4.3827855 | 1.476269 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_01g0023290 | SBH | 0.031254 | 0.0 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_01g0023260 | SBH | 0.085755 | 1.744840 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_01g0023510 | SBH | 0.0 | 0.0 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_01g0023520 | SBH | 0.064851 | 0.035976 | 0.053111 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_01g0023370 | SBH | 0.0 | 0.0 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_01G023620 | SBH | 0.0 | 0.0 | 0.0 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_01g0023320 | SBH | 0.0 | 0.0 | 0.0 |
