Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsARC_01g0017120 | OGI:01050520 | 7/16 | ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | Chr01:15841152-15844529 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | tcactcttcttcactgcaagactgagatgatgctctagcactagaggatggagtagtatttggtagctgatttccatggttctgatcaaatggaagagaggatgtagcagtatttggtggctgacttccttggttctgatcaacctgaagatacatgcatgaatttgttattctggaagcttatggctatataagttacaacatttaaaaatagtaatcttgtggtcatacctcttgtcttggaatgaccctagcaagtgatggtggcaacctagaaatcaaattatcctctggatatttctcagccaaatatgatactataaaactaatgaaaccatttacattactggagctactcccttcactgcttcctgatatattcgaaaatcttccaccataatagtttgttggagtaatggttggacccatgcctctaactctaccactatgatcctttccaaacacttctaatatattttgttcaaaatcagcttcactgagttcttggccatccactcttttctgagccaatttcatatatacttcattctacgttggaaaaaaattgtaaactcttaatgtagtgtattttgttttacaaagagtttattaaaaaaaagcagtatggcataccattttttcttcagtagcatcgttaacatatctgccatctttcgtcttatggcattcatcaaagaaggttgctcggtccacctccactccattaacttcctacagattatacatctctagtgcatgaggaaattgaagcaatagtgaattaatatatgaaaattgcttaaaatcttactagctctttcctctttcttgcaaaactctttcttcctaatgtgtgtggatgcttaatattttgtgcattctctttgtttttgtcactgattttctaatgatacaacatatagcattaatgagctgatataaatcaaaatgatggtcattcagtcactaaaaagtcccaatatatatttaccttagagtcctctgagtaccagtaagagactagggtggcccattgagattcagcaacagttttgggcatggtttgcaatactcgttccatagataagttaggcttgtaatagccctttttaagttttgacttgtactgcctccatttgccatctaactggtggagattccaattattagctcttccatcaattgcaaactttctctagtgcatatgaaaaaaaaaagtgaatggaattatattggaatcaccataagaatatgatttaaaaagctgtgaaaattaaagagcaatacctctacttcagaaatcatttttggatgatatactctcttataaagtttatgattccattgaagaatgtttagtggagctagatgtggcttcctgacaagtgttcctaaataggatccaagaactatagcagactgggagcaaggtatgttgaaacgatccagtttgacaataatcttaacaccctctggaagattttcaacatttgccaatttaattggtcctcgacgtcttttaatgcggccatcaggatctgtaaaattttaaaagttattctgtaagcaaaagttttgaagcgaataaacaaatacatcttacgatactcatagcaatttgtgcgccaatctgcgtttgttatgttctgttcttcaacataatgatcatttgggactagttcttgatcttgtacaccattctccaaaagctccaagtcttgtaatctttgggaccttgttgccatttacactatatttaaaaaaatggattagaatgttattaataacaaaaccgttgcatatcagttaaaatgccaaaatgagaacatacaaatcttcatatatcaagttgataagtggaaaatttacccttcataacaaattctcatctttgtttttttttcttctttgttaagtcatatcctttttatggtttagtgcaaatcctcctataaatatgaacaggaactcacaatctgtgtctatgaataactttagccaaccaaaatatctatgaatagttttgcctaagtctttactacttaaagaaaacaacttcgatcacaaaagcatatgcagtatacaatttccagataatagtcacacgagcagtggtaaatcacctcgatagtagttgactgggatcgaattgcccaaatccacaaaagcaaagacctgtacacatacgaaatgagagatgttgaaatacaccgccatctctgtaaaatgaaatgatcatttacgtagaatgtgattaacggcaaggttacgttactaattaaattagatctacatgattagtgcccaggttaacgagaatttgtttggcaaccaaattttgggtgctagcataccgatgcatcaatgccgttcacatctaaattgatcaaaacttgatttacaataattaaaaaacagtgcgtcaacctctttctggacttgcttgtgtagaacaatcatcaaacaattgttgtgcacactgtgcagccattaaaaaacaaagtggtagccgattaaacaacaaagtggtagcctcgcctgcttgctactaacaaatcaaacaagtgatgatgccagcggctgcagcttgcgaagcggtaattaccttggacagcttcagcaggatacgatctggacgatcgctgccgggacgcacgcctgacggctgtagggacgtccgcgatggaggtggagcaaatgtgatctgggcaaccagtgggacgcgctgggcaacggctgcacgaatatgcacgccagtgctggcggtaggatgcacgtgccggaccgacgctggggcgcggcaacgctacaggcgcacggcaggctggagccctaccgggggcggtggctgggcggcgttcctaggaattgggtattgaaagattgaaagaagtggataatagattggttttgtacctcagttggattgtaatcacctccgacttttcgagtgaacgaaaaaaatcccgcaaacttcatcatcagaaaacacgcgtagataaaaaaatttagcgaacgggcgccaaaaacaaatcttttcgcacgcgtttgacacggatttttaacacccgtcataaggatcgtgtcaacggattttaacccccgtcctatcaaattttcatcaaacagataatttaactatagagacgcttcgttcatctgtctcttctatctgtatctagtaatagggtgggatgggaggtgggctttggcaaagacggtttcccaagccattgctttgaaaacgtctctagaggctgtttctgttgtagtgtcaaccactccaattgcgcgctgtaccatcgacgtgcgctgatccttgttgtcccgggcatacaggttggagtgatgaacggcctggccagttgattgggccat
More
|
||||||||||
| CDS seq | atggcccaatcaactggccaggccgttcatcactccaacctgtatgcccgggacaacaaggatcagcgcacgtcgatgcgttgccgcgccccagcgtcggtccggcacgtgcatcctaccgccagcactggcgtgcatattcgtgcagccgttgcccagcgcgtcccactggttgcccagatcacatttgctccacctccatcgcggacgtccctacagccgtcaggcgtgcgtcccggcagcgatcgtccagatcgtatcctgctgaagctgtccaaggtctttgcttttgtggatttgggcaattcgatcccagtcaactactatcgagatcctgatggccgcattaaaagacgtcgaggaccaattaaattggcaaatgttgaaaatcttccagagggtgttaagattattgtcaaactggatcgtttcaacataccttgctcccagtctgctatagttcttggatcctatttaggaacacttgtcaggaagccacatctagctccactaaacattcttcaatggaatcataaactttataagagagtatatcatccaaaaatgatttctgaagtagagagaaagtttgcaattgatggaagagctaataattggaatctccaccagttagatggcaaatggaggcagtacaagtcaaaacttaaaaagggctattacaagcctaacttatctatggaacgagtattgcaaaccatgcccaaaactgttgctgaatctcaatgggccaccctagtctcttactggtactcagaggactctaagaaaatcagtgacaaaaacaaagagaatgcacaaaatattaagcatccacacacattaggaagaaagagttttgcaagaaagaggaaagagctagaagttaatggagtggaggtggaccgagcaaccttctttgatgaatgccataagacgaaagatggcagatatgttaacgatgctactgaagaaaaaatgaatgaagtatatatgaaattggctcagaaaagagtggatggccaagaactcagtgaagctgattttgaacaaaatatattagaagtgtttggaaaggatcatagtggtagagttagaggcatgggtccaaccattactccaacaaactattatggtggaagattttcgaatatatcaggaagcagtgaagggagtagctccagtaatgtaaatggtttcattagttttatagtatcatatttggctgagaaatatccagaggataatttgatttctaggttgccaccatcacttgctagggtcattccaagacaagaggttgatcagaaccaaggaagtcagccaccaaatactgctacatcctctcttccatttgatcagaaccatggaaatcagctaccaaatactactccatcctctagtgctagagcatcatctcagtcttgcagtgaagaagagtga
More
|
||||||||||
| Protein seq | MAQSTGQAVHHSNLYARDNKDQRTSMRCRAPASVRHVHPTASTGVHIRAAVAQRVPLVAQITFAPPPSRTSLQPSGVRPGSDRPDRILLKLSKVFAFVDLGNSIPVNYYRDPDGRIKRRRGPIKLANVENLPEGVKIIVKLDRFNIPCSQSAIVLGSYLGTLVRKPHLAPLNILQWNHKLYKRVYHPKMISEVERKFAIDGRANNWNLHQLDGKWRQYKSKLKKGYYKPNLSMERVLQTMPKTVAESQWATLVSYWYSEDSKKISDKNKENAQNIKHPHTLGRKSFARKRKELEVNGVEVDRATFFDECHKTKDGRYVNDATEEKMNEVYMKLAQKRVDGQELSEADFEQNILEVFGKDHSGRVRGMGPTITPTNYYGGRFSNISGSSEGSSSSNVNGFISFIVSYLAEKYPEDNLISRLPPSLARVIPRQEVDQNQGSQPPNTATSSLPFDQNHGNQLPNTTPSSSARASSQSCSEEE |
||||||||||
| Function | - | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsARC_01g0017120 | OsARC_01g0017120.01 | Chr01 | 15841152 | 15844529 | - | NAM | ||
| CDS seq | atggcccaatcaactggccaggccgttcatcactccaacctgtatgcccgggacaacaaggatcagcgcacgtcgatgcgttgccgcgccccagcgtcggtccggcacgtgcatcctaccgccagcactggcgtgcatattcgtgcagccgttgcccagcgcgtcccactggttgcccagatcacatttgctccacctccatcgcggacgtccctacagccgtcaggcgtgcgtcccggcagcgatcgtccagatcgtatcctgctgaagctgtccaaggtctttgcttttgtggatttgggcaattcgatcccagtcaactactatcgagatcctgatggccgcattaaaagacgtcgaggaccaattaaattggcaaatgttgaaaatcttccagagggtgttaagattattgtcaaactggatcgtttcaacataccttgctcccagtctgctatagttcttggatcctatttaggaacacttgtcaggaagccacatctagctccactaaacattcttcaatggaatcataaactttataagagagtatatcatccaaaaatgatttctgaagtagagagaaagtttgcaattgatggaagagctaataattggaatctccaccagttagatggcaaatggaggcagtacaagtcaaaacttaaaaagggctattacaagcctaacttatctatggaacgagtattgcaaaccatgcccaaaactgttgctgaatctcaatgggccaccctagtctcttactggtactcagaggactctaagaaaatcagtgacaaaaacaaagagaatgcacaaaatattaagcatccacacacattaggaagaaagagttttgcaagaaagaggaaagagctagaagttaatggagtggaggtggaccgagcaaccttctttgatgaatgccataagacgaaagatggcagatatgttaacgatgctactgaagaaaaaatgaatgaagtatatatgaaattggctcagaaaagagtggatggccaagaactcagtgaagctgattttgaacaaaatatattagaagtgtttggaaaggatcatagtggtagagttagaggcatgggtccaaccattactccaacaaactattatggtggaagattttcgaatatatcaggaagcagtgaagggagtagctccagtaatgtaaatggtttcattagttttatagtatcatatttggctgagaaatatccagaggataatttgatttctaggttgccaccatcacttgctagggtcattccaagacaagaggttgatcagaaccaaggaagtcagccaccaaatactgctacatcctctcttccatttgatcagaaccatggaaatcagctaccaaatactactccatcctctagtgctagagcatcatctcagtcttgcagtgaagaagagtga
More
|
|||||||
| Protein seq | MAQSTGQAVHHSNLYARDNKDQRTSMRCRAPASVRHVHPTASTGVHIRAAVAQRVPLVAQITFAPPPSRTSLQPSGVRPGSDRPDRILLKLSKVFAFVDLGNSIPVNYYRDPDGRIKRRRGPIKLANVENLPEGVKIIVKLDRFNIPCSQSAIVLGSYLGTLVRKPHLAPLNILQWNHKLYKRVYHPKMISEVERKFAIDGRANNWNLHQLDGKWRQYKSKLKKGYYKPNLSMERVLQTMPKTVAESQWATLVSYWYSEDSKKISDKNKENAQNIKHPHTLGRKSFARKRKELEVNGVEVDRATFFDECHKTKDGRYVNDATEEKMNEVYMKLAQKRVDGQELSEADFEQNILEVFGKDHSGRVRGMGPTITPTNYYGGRFSNISGSSEGSSSSNVNGFISFIVSYLAEKYPEDNLISRLPPSLARVIPRQEVDQNQGSQPPNTATSSLPFDQNHGNQLPNTTPSSSARASSQSCSEEE
More
|
|||||||
| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.0 | 0.0 | None |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os01g28310 | RBH | 0.0 | 0.0 | 0.0 |
| Nipponbare | IRGSP 1.0 | RAP-db | NA | NA | NA | NA | NA |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_01g0017840 | RBH | 0.0 | 0.0 | 0.0 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_01g0017510 | RBH | 0.0 | 0.0 | 0.0 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_01g0017750 | RBH | 0.0 | 0.0 | 0.0 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_12g0017830 | SBH | 0.0 | 0.0 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_01g0007980 | SBH | 0.0 | 0.0 | 0.0 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_02G0117400 | SBH | 0.0384 | 0 | 0 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_01g0007940 | SBH | 0.0 | 0.0 | 0.0 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_01G0260900 | RBH | 0.1633855 | 4.9222585 | 0.003344 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_05g0010160 | SBH | 0.0 | 0.0 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_01g0007970 | SBH | 0.0 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_01g0007970 | SBH | 0.0 | 0.0 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_01g0007980 | SBH | 0.0 | 0.0 | 0.0 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_01g0007870 | SBH | 0.0 | 0.0 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_01G017500 | RBH | 0.0 | 0.0 | 0.0 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_01g0007850 | SBH | 0.0 | 0.0 | 0.0 |
