Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsGoSa_01g0007970 | OGI:01020200 | 16/16 | GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | Chr01:6281481-6290093 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | ctaaCTTccttggttctgatcaacctacatttacatccatgaatatgttattttgtcagcttatggctatataagttgcaacattaaaaacattaatcttgtgcccatacctcttgtcttggaatgagcctagcaagtgaaggtggcagcctagacatcaaattatcttctggatatttctcagcaagatatgataccataaaactaatgaagccatttacattactggagctactcctttgttcacttcttcctgacatatttgaaaatcttccaccataatagtttgttggagtaatggttggacccatgcctctaactctaccattatgatcctttccaaacacttctaacatagcttgttcaaaatcagcttcagtgagttcttggccatctactcttttctcagccaatttcatatatacctcattctacatggaaaaattgtactcttactatagtgtattttattatagaaagagttaaagaaaaacaagtaatacgtcataccattttgtcttgtgtagcatcattaacatatctaccatcttttgtcttatggcattcatcaaagaaggttgctctgtccacctccactccatcatgttcctgcagattatacatgtcaagtgcatgagaaatagaagcaataatgaatgaagaaataaatgctaaacttcttaccagctctttcctctttcttgcaaagctctttcttcctaaTGtgtgtggatgcttaatattttgtgcattctcttggttttgatcactgattttctaatgatacaacatataccatcaatgagttgatataaatcaaagcgatggctgttcactcactaaaaagttcaacacatatttaccttagagtcctctgagtaccagtaagaaactagtgtaggccattgagattcattaacagtttggggtaccgtttgcaatactcgttccatgggtaagttagccttgtaatactttttcttcagatttgacttgtattgcctccattttccatctaactggtggagaagccaatccttagctcttccatgaattgcaaactttctctagcacatatgaaaagagtgaatggattatacaggaatcaccataaaaatatgattttaaaaaccatgtgaattaaacaagcaatacctgtacttcagaaatcaattttggatgatatattctcttataaagtttatcattccatttaagaatgttcagtggagctagatgtggcttcctgacaagtgttcctaaataggatccaagaactacagaagattgtgagcaaggtgcattgaaacgatccaatttgacaataatcttaacaccttccggaagattttcaacatttgccagtttagttggtcctcgacgtcttttaatgcggccatcaggatctgtcatgtttaaagatttagtccacaagcatacaagTTttaaaagcaaataaacaatatatcttacgatactcatagcagtttgaacgccattctgcatttgttatgttctgttcttcaacatagtgatcatttgggaccatttcttgattctgtactccattctctgAaaaatccaagccttgcagtctttgggaccttgctgccatttgcactatatttaaaaaaacagattagaatgttacaggtgcataagtaacaatataacccttgcatattgaggtacattagagaatgcaaattctaggaattgagatactcctgttttatatgcagcagttgttctgggcttattaatccagtccctattcatttatccagtactcaattactgaaaaacataaagaaaataacatcgaggaattagaatgttaggagagccaatgtttgatgtattgttgattgttaataagttactatgcgtcgtattaggtgctatcaatataatggatagagaagcaacaatccaattcatataaattactgtaaataacagtaccagatattatgtggagcattatttgattataaatatttcgagatcacaacaatatactattgctacattataagtaatttatcttttccactgatcaaactaaattgaccaaagtataaattctaatgtttgctgaagtattaagtaggtctacatcttacaagcctagagttcaagagagcatcaaaaagttcagatcatgctgtgttcccaatcaattttggcacaaacatgattataaattggaagatacgtattcgaattagttgaccacacataattaaatattgtactcaccaagttctgcaaattatactgatgtttcccttagctgctagctgttgtaaatatctgtcacgcccggaatttctatccaaaattccaaacgcttacatgtgtgtgaaccctcgtccaggaatcagccgaggcacacaataacaaattgataatagagtacaattattactctaattaataagcgaataaaatgtcattacagaggtagatagttcctctcaatcaataaagatctaagcagcggaaaataagataaacggcgcagacggcttcactccacaggcagcttgaccaaggctacacctaatcctccacaccatcagcctcattgtagaactcttcctctgatgaatgattgcaaggtgagtatatgacatactcagcaagccacgcagcaaatatgcaagtgcacaggataacaaaggatggcatagtagggttgcatttgcaaaaacagcattaagcaaacatttgagaatttaataaaacagttaagtagtaattaatcaatattagtccaacgctacacaacataccctgttgtataggcccaaccattctgaacaaccatcccggctgcacagttctatctccaaaccaggaatgtaccattccaaaccaggagctaatcaaattattaccaattatagcatcatttactatggtgagaagtgtgggactaatcacgaaagacattgttagacccgcccataaccgcgggtacggctattcgaatagTtttactctgatcagaggtgtaccactgtacccacaagacacaaccccacatcatgtcaccatgtgcctcaataccaccacggtacctcggaaaggagttgtgacaataccccttgcataacacaatccaccgcagcgcaccttcctggatcataatcacccccttataaacaaggcatggactccccagcgacccccgtgggcttatctccgccacttctcagtctggtgccccgcaatgaaccatgctatacaaaagataaagccgttgcccaCGctggcttgtggttggcacggttaatgtttcacaaccgaaactcgtgaaccggtccttaattgtcatgagcacgaccatcaaaaccatgtgctcacaacccaccattatcaggttttagttggcacattaattaattaatcaatcacgattgaccatcgtgaactatcattaagccatcattaaataatagtgagtcataagttatcccaatagtgtgcaaatgtttctaagcagggctaaggaattatatctaatatctagttgaaccaataaataaagctcaactagtcaagttataataaCccaaggtatcaaggaataaagtaatcaagatcaaaaaaagggctataacaaacaataggttaattccacccaatgacattcgaaaataaatgcaatagttgaatagaaacaatagctttaaacgggatcaacatgctcaaagggttgtttgggatctgtgtgacttgccttgCTggCCTtggaactcttcaaactcttctccggcgaaaacggactctccggaaacgacggaatctaagcagaaagaagcaaaatcaccaaaacagcacataaacaagcatgaacagtacatgtggatatttttaatatgtagatctcaattttagaaaaatttagagacttgaaccaactaaatcggagctaagatgaattagttatgaatttttaaagattaaatcggattaaaacacttaaactgattttaattgaattatgacgcaataatgaattatttttgaaaaggaaaagaggatttattgcgtcagcggctagggtttgcggtggaccgggcgcacggcaacggttcacgggaacgaacgggtgagatcgatccatccaaaacggacggccgagatcgaacgggtctacggcggctcacggcaaacggccacgatgacgtcggcgatgacgtcaccaccggcggcggctcgggcggcgcaggcgcacttgctcgccggcgaacgacagcgcggcggcgcgaacggaggacacctacgggtagcggacggcacggcgaactcaccagcgaccaaagcgacggcggaagatcaacggacggcgacggcgacgaggttaaaacggcggcggtcttcGgcttgacgacggcgacggtgctccggcggtcttcggcgacggcgaagaggcggacgaggacggcgacgacttggcgaccacgacgacggtcttcccgagcgacggcgacgtctggcacggcggcggcgcacggctggagcgacggcggcgacggcggcgctagggcacacggcgctagggcgtttctgacgacgagaggcgaaggcgaaggtggcggcgggtagaggagacaccggggagccttttaaaggggcttggaggcgacgacgaaggcccacggcggccggcgacgagaaggaaagttcgagctcggagagagaaaagccgatccgattcgaactcgaatccatcgatttccaaaccgatttagccgatgtttccaaaGaAGaaaaggtataggagatcccgaagatcatttcccctctattgattcggccggagaaggaaaggatcggccgaattggaaagcggcggcggcggcggcgcggcgctagggtttcggccggaggaagacgacgatcccgacaggtgggacccacctgtcagcgacagcgcgctcgcgcgggcggctgcggctgcggactgggccggctgggccgaggagagagagagaGgggttttgggccgactttcggcccaaagccaaaagaaaactttttaaaacttttttcaatttaaattatttcttaaatgcaattccatttattaaaaatacttccttagctcaaataaatcccagaaaaatctaggaattatagaattaagcaaagtatttaataaaattttatctggccccattttatattggaatttattaattAaaattagatcttctcttctaggcttttaaaatgaattctaaaaattccatttaaacaacaatttatatattttgaaTttttagggtgtgacaatatcctctacgatggccaaattacagttgcacaaatattcaaagttacatgccagtcacctatacattataaaataattagatgcaagcaggaaaaacaaaccatctgtgcattaaattttttcccccatatacttgggttgctataacagataattaagaattaaatactttgtctgtaagcagaacacatatcaaacatcagctgtgcaagtgtgcagaaatagtattgcaattaggatcgctactgttgccaggattcgatggttgaggaatttaggcaacaccaggaagaaaatcactgatgaatctgcggcgtgtcgatgctgctgctgtggggcAaacgatgggcgtgtggctggctgatgacgcggggggcacgcagctctggcggcgctcagcctggaaggcacaggcggcgatgggtggacggtgggtgctaggcggcacaggcggcgttcaccctggacggcgcaggcggcgatggcgtgggcagtaggtgcgcagcccaggcgtcgccggcggcgctgagcccagacggcacaggcggcggccgtggggctcgtacgcgagaggccgtcgtcttcacggtggagctaatggaaagattggaacatatcgtataggagaaggagatgggtttgttctcttagataatatcgtaactacttccgagttccaagggagataaaaaaaatccgcgggagtgaggtaaaaacgtgggaaagattgatcTttttggagggaacgagcgaaaaaaaaattcccactaaattgtttggcgctgattaatgtgattgtagagacggtctattatcctgtccctaattagcgtatctacgtaagaggcaaagtgggagatgggttttaatagggacgacgtgcttagccgtctcttacagaacgcctctacatgccctttttgcagtagtgaatctggacagaggtacaactatatttttttacacaggaatatgtttcaaatattttcaaatctaaacaaatgaacctaagaaaacacgtgcatttactctgaatataaattgtatgcatatttctaagttatcatccaaatttatgtttaatctattagtaataccttatccgttcgatgtccatatctagaaattaaaggtgcctgtcagtcatgagtcatgacttcaattttctgcaatcacaagcttcgtattattctcgtcatctctaaataagtttagtttcagccttaatatttatttctaaataagtgtagttttagatggtccactatacctctttaatactactttatctgtttcttcttgtctttaaccatcgaaccaataacagtccctccttattttcttctctcCTCTttttctctccatattaatgaaggtcatagtaatcttttaacatcttgcttaatatatcttcgaatagctaaaattatactcactatattatttagagacggggcatatcactatatttaTtttagataatatataaaatctagccccaattttaaaagaagctacaaccaattattatgtagttgttggttgtatcggatagcatgaatgtcaattagtaactaattgatctatatatgcatattgcaagcatgatgtgagtcagttttgcaaaaaaatcagtgtaaaaaagggaaatcttctatcttggtctgtcataatatgggttcgatgtggcacagtgacaggctgacagcggcacactggcacctgcatgcataggcgaatcgCTggcggagacgccggcaacttggtcctggcaaacaaatgtatcccgaacctttcgacgtgacgttcttcggccgccccaccagacgcgccagcgacggccgcctcgtgctcgacttcagaaaaaaatatttaaaataaatatatacattttttaataatggaataaaacatttcggtctttgctcaaaagaggtacaactaattattactacaatctagcactctaaaaagagtgtagttcaaataaaattgaaaacatgacaaaataagaaataaccaatgtaagataaggagtctatttattaatctcccttcacaattgacaaaaagttgcataaccgtcgtctcaagtttacgacatgcaatttttataaactctcaatcttcatgacacctttggagttgtgcctaaaaccggagctaatattgcctgaaaattaactgcaaatatgaaatagatggtgatttgtcaaaaaccatatcaatcatgctcaaccacagagcctaacatatagctccaacaagtataagtttgctccttttcttgtccaccccaaaagccacccatcaaaatatgagatatgctactagtaaggtaaaaacacaccctagctggcactatcttccgggcggcctctggactagcacttgcgggacatttttcctttagaccacgggacagccgtctgctgtcttgtggcaggccccgtactcaatcttcaatgaggggaaaaataatgattgagtgcttacgtactcaatcattattttccccctcgtgaagattatggtttatttctagtcctaagtcattgtttatggattgggtctaattgcgttaagttttgttgttctttctgtgtttgctgattacattttcgaggttgtttagaaagtgtgacctcatatatcatacaatatctacattatatatagtcgctacgatgtatctccgttggataccagcaagttttcttgggactggtatcggtattatagttctgcgagagttgattcacatcgttcacttgtggcacactttatctggcatctctataGgtggtattagaacgggtatgagcatgatgtgatatagacgatattagagcataggtttagtataatgaatgaaactcgCTctctcgtagaattcccgtgaggatcttatattgaaatacaatagctactccctctgtcctaaaaAGaattaatctaggaggggaatataacccctccgtttaatagattgatgtgagtatacaaactcgccGgtgacgcgcacgatctgtcagcaaggatgcaaactcgcttgctccgcacgagttcgcttggctggacagcgaaatggctaccaaattaaatgctaatgaatacacaccttaccaaataaaatgagtacacatgcttaaaaacgcaccttcggaccctgttccattggccggcggtcaaaaacgcaccctagctggcactatcttcggggcggcctctggactagcactttcagacatttttactttagaccacgggacagccgtctgctgccttgtggcaggccccgtcat
More
|
||||||||||
| CDS seq | atgacggggcctgccacaaggcagcagacggctgtcccgtggtctaaagtaaaaatgtctgaaagtgctagtccagaggccgccccgaagatagtgccagctaggctccaccgtgaagacgacggcctctcgcgtacgagccccacggccgccgcctgtgccgtctgggctcagcgccgccggcgacgcctgggctgcgcacctactgcccacgccatcgccgcctgcgccgtccaggagaatggagtacagaatcaagaaatggtcccaaatgatcactatgttgaagaacagaacataacaaatgcagaatggcgttcaaactgctatgagtatcatcctgatggccgcattaaaagacgtcgaggaccaactaaactggcaaatgttgaaaatcttccggaaggtgttaagattattgtcaaattggatcgtttcaatgcaccttgctcacaatcttctgtagttcttggatcctatttaggaacacttgtcaggaagccacatctagctccactgaacattcttaaatggaatgataaactttataagagaatatatcatccaaaattgatttctgaagtacagagaaagtttgcaattcatggaagagctaaggattggcttctccaccagttagatggaaaatggaggcaatacaagtcaaatctgaagaaaaagtattacaaggctaacttacccatggaacgagtattgcaaacggtaccccaaactgttaatgaatctcaatggcctacactagtttcttactggtactcagaggactctaagaaaatcagtgatcaaaaccaagagaatgcacaaaatattaagcatccacacaCAttaggaagaaagagctttgcaagaaagaggaaagagctggaacatgatggagtggaggtggacagagcaaccttctttgatgaatgccataagacaaaagatggtagatatgttaatgatgctacacaagacaaaatgaatgaggtatatatgaaattggctgagaaaagagtagatggccaagaactcactgaagctgattttgaacaagctatgttagaagtgtttggaaaggatcataatggtagagttagaggcatgggtccaaccattactccaacaaactattatggtggaagattttcaaatatgtcaggaagaagtgaacaaaggagtagctccagtaatgtaaatggcttcattagttttatggtatcatatcttgctgagaaatatccagaagataatttgatgtctaggctgccaccttcacttgctaggctcattccaagacaagaggttgatcagaaccaaggAAGttag
More
|
||||||||||
| Protein seq | MTGPATRQQTAVPWSKVKMSESASPEAAPKIVPARLHREDDGLSRTSPTAAACAVWAQRRRRRLGCAPTAHAIAACAVQENGVQNQEMVPNDHYVEEQNITNAEWRSNCYEYHPDGRIKRRRGPTKLANVENLPEGVKIIVKLDRFNAPCSQSSVVLGSYLGTLVRKPHLAPLNILKWNDKLYKRIYHPKLISEVQRKFAIHGRAKDWLLHQLDGKWRQYKSNLKKKYYKANLPMERVLQTVPQTVNESQWPTLVSYWYSEDSKKISDQNQENAQNIKHPHTLGRKSFARKRKELEHDGVEVDRATFFDECHKTKDGRYVNDATQDKMNEVYMKLAEKRVDGQELTEADFEQAMLEVFGKDHNGRVRGMGPTITPTNYYGGRFSNMSGRSEQRSSSSNVNGFISFMVSYLAEKYPEDNLMSRLPPSLARLIPRQEVDQNQGS |
||||||||||
| Function | - | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsGoSa_01g0007970 | OsGoSa_01g0007970.01 | Chr01 | 6281481 | 6290093 | - | NAM | ||
| CDS seq | atgacggggcctgccacaaggcagcagacggctgtcccgtggtctaaagtaaaaatgtctgaaagtgctagtccagaggccgccccgaagatagtgccagctaggctccaccgtgaagacgacggcctctcgcgtacgagccccacggccgccgcctgtgccgtctgggctcagcgccgccggcgacgcctgggctgcgcacctactgcccacgccatcgccgcctgcgccgtccaggagaatggagtacagaatcaagaaatggtcccaaatgatcactatgttgaagaacagaacataacaaatgcagaatggcgttcaaactgctatgagtatcatcctgatggccgcattaaaagacgtcgaggaccaactaaactggcaaatgttgaaaatcttccggaaggtgttaagattattgtcaaattggatcgtttcaatgcaccttgctcacaatcttctgtagttcttggatcctatttaggaacacttgtcaggaagccacatctagctccactgaacattcttaaatggaatgataaactttataagagaatatatcatccaaaattgatttctgaagtacagagaaagtttgcaattcatggaagagctaaggattggcttctccaccagttagatggaaaatggaggcaatacaagtcaaatctgaagaaaaagtattacaaggctaacttacccatggaacgagtattgcaaacggtaccccaaactgttaatgaatctcaatggcctacactagtttcttactggtactcagaggactctaagaaaatcagtgatcaaaaccaagagaatgcacaaaatattaagcatccacacaCAttaggaagaaagagctttgcaagaaagaggaaagagctggaacatgatggagtggaggtggacagagcaaccttctttgatgaatgccataagacaaaagatggtagatatgttaatgatgctacacaagacaaaatgaatgaggtatatatgaaattggctgagaaaagagtagatggccaagaactcactgaagctgattttgaacaagctatgttagaagtgtttggaaaggatcataatggtagagttagaggcatgggtccaaccattactccaacaaactattatggtggaagattttcaaatatgtcaggaagaagtgaacaaaggagtagctccagtaatgtaaatggcttcattagttttatggtatcatatcttgctgagaaatatccagaagataatttgatgtctaggctgccaccttcacttgctaggctcattccaagacaagaggttgatcagaaccaaggAAGttag
More
|
|||||||
| Protein seq | MTGPATRQQTAVPWSKVKMSESASPEAAPKIVPARLHREDDGLSRTSPTAAACAVWAQRRRRRLGCAPTAHAIAACAVQENGVQNQEMVPNDHYVEEQNITNAEWRSNCYEYHPDGRIKRRRGPTKLANVENLPEGVKIIVKLDRFNAPCSQSSVVLGSYLGTLVRKPHLAPLNILKWNDKLYKRIYHPKLISEVQRKFAIHGRAKDWLLHQLDGKWRQYKSNLKKKYYKANLPMERVLQTVPQTVNESQWPTLVSYWYSEDSKKISDQNQENAQNIKHPHTLGRKSFARKRKELEHDGVEVDRATFFDECHKTKDGRYVNDATQDKMNEVYMKLAEKRVDGQELTEADFEQAMLEVFGKDHNGRVRGMGPTITPTNYYGGRFSNMSGRSEQRSSSSNVNGFISFMVSYLAEKYPEDNLMSRLPPSLARLIPRQEVDQNQGS
More
|
|||||||
| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.0 | 0.0 | None |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os01g11720 | RBH | 0.0 | 0.0 | 0.000000 |
| Nipponbare | IRGSP 1.0 | RAP-db | NA | NA | NA | NA | NA |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_01g0008340 | RBH | 0.0 | 0.0 | 0.0 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_01g0007980 | RBH | 0.0 | 0.0 | 0.0 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_01g0008380 | RBH | 0.0 | 0.0 | 0.0 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_01g0007900 | RBH | 0.0 | 0.0 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_01g0007980 | RBH | 0.0 | 0.0 | 0.0 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_01G0103100 | RBH | 0.028637 | 0.012464 | 0 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_01g0007940 | RBH | 0.0 | 0.0 | 0.0 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_01G0103600 | RBH | 5.632379 | 6.8419305 | 0.350241 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_01g0009420 | RBH | 0.0 | 0.0 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_01g0007970 | RBH | 0.0 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_05g0010200 | RBH | 0.0 | 0.0 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_01g0007980 | RBH | 0.0 | 0.0 | 0.0 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_01g0007870 | RBH | 0.0 | 0.0 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_01G008000 | RBH | 0.0 | 0.0 | 0.0 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_01g0007850 | RBH | 0.0 | 0.0 | 0.0 |
