Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsARC_01g0005200 | OGI:01014470 | 16/16 | ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | Chr01:3804391-3807525 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | AAGAATTTAGTTTCTCTTCATAAATAAATCAACAAATAGTTGTACAACGCCAGTATGATCACATAATAGTGACCATGAACAGTAAATGTCTGTCTCACTAGTTGCAGAAGGAACTCTGCAAAGCTATGTATGCCTCACTTGAGTACTAACTTATTCAGCTACAGAAAACAAAACTAGCAATTTGACACGAATTTAAACACACAGATTTGAAGAATAAACAGGTTGAAATGTGCTGCATCATGGTGCAAAGAATTGTTTATTTGTTCACTGCTTTCTTGATGGCTTGCTTGCACCTGGTGAGGAACTTGCTGCTGCTTGTGGACACTGAATCTTCATAGCCGTATCTGCCATTGTCGTCGCCGACCACCTTGGGCTTCCTGCTCATGCACTCCACACCCCTTCTCATTCCAAGGATCTTGGAAGGTGAGGAAGGCAGAGACCTGAAACCCCTGGAGCTGTCAGACCTTGGGAACCAGATCTTCTTCTCCTCTCCCCTCTCCTTGATCTCAAAGCTGTTCCTGCACCTGTCCTGCTGCTCAGTAGCACCATCGCCACCGACCTCGACGATCTCATCGGAGCATTCGGTGATCTCATTCCTGCAGCTCTCATCATCAATTCTGCTTTGCATTTGGTGCTCGTCTGAAGCGATTTCATCAGCAGTGTTGTGATCTTCAGAAGAATGATATGCTGCTGCAGGATCTTCTTGCTGCTGCTGATCCTCCATGAGCATTTGAAGCCACTTATCCACAGTTCCTTTGCCGGTGTGGTTCATGTTTGCGTCGCCTTCGGATCGACCGACGCCTTGCCGATGAATCACATTATTCTTTTTCAATAGCACCGATTTCTCTGCAGGATATCTAGGTGTTCCATACATGCCAGTTACTCTGTAAGGAGGACTTGGAGGAACTGAGGATGTCCTTGGCACTGAAACTGTCTGAGATCTTTCAGTCTCAGACTCACATTGCACCATGGCTGCTTTGCCCTTGCCATTGCCATCTCTTGACCTCACAGGAGTGCTAGTTGCCCTTGATCCCCTTGATGACATGGTCCTTTCTCTCCTTCTGCCGCGCTGCCGTTCTTTGATCGCCAGATGCTCCAGCTTCTCCCTCACTGATGCTCTTCCTCTCTCAGTGTCAACTGTGTTGTCTTCCATGGACCTCCTTGGGAAGTTTATCACCTTGAAAGGTGAATTCCTGAAATTTCCCATTGTTGAAGTTTCACCTGCAATTTCCTCTTCCTCTAGGGAGATGTATGCATCTGAAGCCCTCTGGTCCTCCTCCAGGAAAACCCTCAGCTCCTGCTTGAGAGGGCTTCTGCTCCTCAGTCTTATTCCTGGAAAATACTTCACCCTTTCACTGTGCCTTTCTTCTAAGCTGTGCCTTTCCTCTAGCAATCCATCATCGTCAACACGATACCGCTTCCTTGCTTGATCGGTGAAAGGCTTGATCTGCTTCTCCAGTTCATCCTTCTGCTGGTACTTCCTCCGGAGCTCGGTTTCGGATGAGTCACACATTGCTCTCTGGGCCTCGAGTCTCGCCATGAGAGTGCTCGTTGCAGCTTGGTTCATCCTAAGCTGCTCCTTGTACACAACAGACCTGCACATTTTGCACCACAATCAACAATTAGCACAAACAATCGACATTGAAATCAACTGCATGAGAGTTCTTGGCTCTTGCTGCATAGATTCATCCTTACTGGTGCATGGCGTCTCTGATCATCTTCTCCAGCACAGCCTTGTAATTCGACTGAGCCTCCGCCAAGCGGCGGCACTTCTCGACGCGCCGCCGCCTCTTGATGAGGAGGGCCTCCATGTCCTGGATGGCCACCCGCTCCTCTTCATTCTTCTGCTTCAGCTCAGTGGCCTCGTTCTCCAGCTCAGTGAGCTCAGCTTGCTTCTTCTTGGCCTCTTCCCTTTGCCTCAGCGAGTCCCTAGCCGTTGCAATGGACAGGTAAGGGTTGCTAATGTAGCCATCAGCATCCGGATTATTGTTCTCCTTAGTCGAATTAGGCCCATGGTTGGACATTGGCACGTTAAAATTCTCATCCTTTTCTCCCGTGAATTTCTTGGCAGCTAAAGAAACAGGTAGTGAACATTTAGTTTAGCACAAGTTCATGTACAAACACAACAAATCCTTCAAATTATCGAAAAATAGGTATTTCGCATACCAATGAGAGGATAATTAGGCCTGAGCGGCCGGTTTGCATCAAGAGATTTGAGCACCGAGCTGTCGGATCCCCTGGAGGAAACAATGGCAGCAGGGGCAAGGCCAACTTTCTTGGTCAAATCGGAGAAATGGTGCGGAAACGCGTGCGCCTCCACAGCCTGCATCGAGGTGAGCTCCTCGCTGGCCCCGTCGACGAACAAGAACGTGAATGCTCTGTTCCTGCAAGTCTCAGAAGGATTCGATCCATGATGCATCGGTAAAAAAAAAAACCGCAGAGACACATTAAGCTGTTCGATGCGGATGGGCGAACCTGAAGTCGGCGTTCTTGGAGGCGAAGATGGAGAGGAACTGGTTGACGGAGATGCCGAGCTGCAGATCCCACCACGGGACGAGGAACTCCAGCTTGTTGTGCTTCTTCCTGCACACCTGCGCCTGCACGATCCTCAGGTTGCTCGGCACCGTCCTCCCACCTCCTGCGAGCAAATACAAAAAAAACAATCTCGTTAGAGATCGAAGGAATGATGTGGAAGCGGATGTTGGGATGAGTTCGTTCGATCTGCGTTTCTTACGGGCGCAGGGGAACCAGTGGTCGATGTCCCACGCGAGAGGCGAGGCGGAGTCGGCGTGGAGGTAGAGCACGTTGCCGTAGGCGTCGACGCGGAACAGCGCCGGGTCGAACCCGGCGTTGCCGAGGTGGTCGAGCTGCTTCCACAGCAGGTTCGCGAACCCCCGCGGGTTCGCCGTCGGCGCCGCCTCCGCGTCGGCCACCGGGAACATCTCGTTCAGATCCTTCGCCCGCATCGCCTGCACCACCACCCAACACAACCACCCCAATCAGCTCACCACCGCACCAGCAGCCGCGACCATCACCTCGACGAGCACCCATTACCTCGTGCGGGTGGAGGACGTAGGGGAGGAAGCCGTGCGGCGGGCCGTGGCCGTACGGGAGTCCACCGCCGCCACCGCCGCC
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| CDS seq | ATGCGGGCGAAGGATCTGAACGAGATGTTCCCGGTGGCCGACGCGGAGGCGGCGCCGACGGCGAACCCGCGGGGGTTCGCGAACCTGCTGTGGAAGCAGCTCGACCACCTCGGCAACGCCGGGTTCGACCCGGCGCTGTTCCGCGTCGACGCCTACGGCAACGTGCTCTACCTCCACGCCGACTCCGCCTCGCCTCTCGCGTGGGACATCGACCACTGGTTCCCCTGCGCCCGAGGTGGGAGGACGGTGCCGAGCAACCTGAGGATCGTGCAGGCGCAGGTGTGCAGGAAGAAGCACAACAAGCTGGAGTTCCTCGTCCCGTGGTGGGATCTGCAGCTCGGCATCTCCGTCAACCAGTTCCTCTCCATCTTCGCCTCCAAGAACGCCGACTTCAGGAACAGAGCATTCACGTTCTTGTTCGTCGACGGGGCCAGCGAGGAGCTCACCTCGATGCAGGCTGTGGAGGCGCACGCGTTTCCGCACCATTTCTCCGATTTGACCAAGAAAGTTGGCCTTGCCCCTGCTGCCATTGTTTCCTCCAGGGGATCCGACAGCTCGGTGCTCAAATCTCTTGATGCAAACCGGCCGCTCAGGCCTAATTATCCTCTCATTGCTGCCAAGAAATTCACGGGAGAAAAGGATGAGAATTTTAACGTGCCAATGTCCAACCATGGGCCTAATTCGACTAAGGAGAACAATAATCCGGATGCTGATGGCTACATTAGCAACCCTTACCTGTCCATTGCAACGGCTAGGGACTCGCTGAGGCAAAGGGAAGAGGCCAAGAAGAAGCAAGCTGAGCTCACTGAGCTGGAGAACGAGGCCACTGAGCTGAAGCAGAAGAATGAAGAGGAGCGGGTGGCCATCCAGGACATGGAGGCCCTCCTCATCAAGAGGCGGCGGCGCGTCGAGAAGTGCCGCCGCTTGGCGGAGGCTCAGTCGAATTACAAGGCTGTGCTGGAGAAGATGATCAGAGACGCCATGCACCAGTCTGTTGTGTACAAGGAGCAGCTTAGGATGAACCAAGCTGCAACGAGCACTCTCATGGCGAGACTCGAGGCCCAGAGAGCAATGTGTGACTCATCCGAAACCGAGCTCCGGAGGAAGTACCAGCAGAAGGATGAACTGGAGAAGCAGATCAAGCCTTTCACCGATCAAGCAAGGAAGCGGTATCGTGTTGACGATGATGGATTGCTAGAGGAAAGGCACAGCTTAGAAGAAAGGCACAGTGAAAGGGTGAAGTATTTTCCAGGAATAAGACTGAGGAGCAGAAGCCCTCTCAAGCAGGAGCTGAGGGTTTTCCTGGAGGAGGACCAGAGGGCTTCAGATGCATACATCTCCCTAGAGGAAGAGGAAATTGCAGGTGAAACTTCAACAATGGGAAATTTCAGGAATTCACCTTTCAAGGTGATAAACTTCCCAAGGAGGTCCATGGAAGACAACACAGTTGACACTGAGAGAGGAAGAGCATCAGTGAGGGAGAAGCTGGAGCATCTGGCGATCAAAGAACGGCAGCGCGGCAGAAGGAGAGAAAGGACCATGTCATCAAGGGGATCAAGGGCAACTAGCACTCCTGTGAGGTCAAGAGATGGCAATGGCAAGGGCAAAGCAGCCATGGTGCAATGTGAGTCTGAGACTGAAAGATCTCAGACAGTTTCAGTGCCAAGGACATCCTCAGTTCCTCCAAGTCCTCCTTACAGAGTAACTGGCATGTATGGAACACCTAGATATCCTGCAGAGAAATCGGTGCTATTGAAAAAGAATAATGTGATTCATCGGCAAGGCGTCGGTCGATCCGAAGGCGACGCAAACATGAACCACACCGGCAAAGGAACTGTGGATAAGTGGCTTCAAATGCTCATGGAGGATCAGCAGCAGCAAGAAGATCCTGCAGCAGCATATCATTCTTCTGAAGATCACAACACTGCTGATGAAATCGCTTCAGACGAGCACCAAATGCAAAGCAGAATTGATGATGAGAGCTGCAGGAATGAGATCACCGAATGCTCCGATGAGATCGTCGAGGTCGGTGGCGATGGTGCTACTGAGCAGCAGGACAGGTGCAGGAACAGCTTTGAGATCAAGGAGAGGGGAGAGGAGAAGAAGATCTGGTTCCCAAGGTCTGACAGCTCCAGGGGTTTCAGGTCTCTGCCTTCCTCACCTTCCAAGATCCTTGGAATGAGAAGGGGTGTGGAGTGCATGAGCAGGAAGCCCAAGGTGGTCGGCGACGACAATGGCAGATACGGCTATGAAGATTCAGTGTCCACAAGCAGCAGCAAGTTCCTCACCAGGTGCAAGCAAGCCATCAAGAAAGCAGTGAACAAATAA
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| Protein seq | MRAKDLNEMFPVADAEAAPTANPRGFANLLWKQLDHLGNAGFDPALFRVDAYGNVLYLHADSASPLAWDIDHWFPCARGGRTVPSNLRIVQAQVCRKKHNKLEFLVPWWDLQLGISVNQFLSIFASKNADFRNRAFTFLFVDGASEELTSMQAVEAHAFPHHFSDLTKKVGLAPAAIVSSRGSDSSVLKSLDANRPLRPNYPLIAAKKFTGEKDENFNVPMSNHGPNSTKENNNPDADGYISNPYLSIATARDSLRQREEAKKKQAELTELENEATELKQKNEEERVAIQDMEALLIKRRRRVEKCRRLAEAQSNYKAVLEKMIRDAMHQSVVYKEQLRMNQAATSTLMARLEAQRAMCDSSETELRRKYQQKDELEKQIKPFTDQARKRYRVDDDGLLEERHSLEERHSERVKYFPGIRLRSRSPLKQELRVFLEEDQRASDAYISLEEEEIAGETSTMGNFRNSPFKVINFPRRSMEDNTVDTERGRASVREKLEHLAIKERQRGRRRERTMSSRGSRATSTPVRSRDGNGKGKAAMVQCESETERSQTVSVPRTSSVPPSPPYRVTGMYGTPRYPAEKSVLLKKNNVIHRQGVGRSEGDANMNHTGKGTVDKWLQMLMEDQQQQEDPAAAYHSSEDHNTADEIASDEHQMQSRIDDESCRNEITECSDEIVEVGGDGATEQQDRCRNSFEIKERGEEKKIWFPRSDSSRGFRSLPSSPSKILGMRRGVECMSRKPKVVGDDNGRYGYEDSVSTSSSKFLTRCKQAIKKAVNK |
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| Function | - | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsARC_01g0005200 | OsARC_01g0005200.01 | Chr01 | 3804391 | 3807525 | - | NAM | ||
| CDS seq | ATGCGGGCGAAGGATCTGAACGAGATGTTCCCGGTGGCCGACGCGGAGGCGGCGCCGACGGCGAACCCGCGGGGGTTCGCGAACCTGCTGTGGAAGCAGCTCGACCACCTCGGCAACGCCGGGTTCGACCCGGCGCTGTTCCGCGTCGACGCCTACGGCAACGTGCTCTACCTCCACGCCGACTCCGCCTCGCCTCTCGCGTGGGACATCGACCACTGGTTCCCCTGCGCCCGAGGTGGGAGGACGGTGCCGAGCAACCTGAGGATCGTGCAGGCGCAGGTGTGCAGGAAGAAGCACAACAAGCTGGAGTTCCTCGTCCCGTGGTGGGATCTGCAGCTCGGCATCTCCGTCAACCAGTTCCTCTCCATCTTCGCCTCCAAGAACGCCGACTTCAGGAACAGAGCATTCACGTTCTTGTTCGTCGACGGGGCCAGCGAGGAGCTCACCTCGATGCAGGCTGTGGAGGCGCACGCGTTTCCGCACCATTTCTCCGATTTGACCAAGAAAGTTGGCCTTGCCCCTGCTGCCATTGTTTCCTCCAGGGGATCCGACAGCTCGGTGCTCAAATCTCTTGATGCAAACCGGCCGCTCAGGCCTAATTATCCTCTCATTGCTGCCAAGAAATTCACGGGAGAAAAGGATGAGAATTTTAACGTGCCAATGTCCAACCATGGGCCTAATTCGACTAAGGAGAACAATAATCCGGATGCTGATGGCTACATTAGCAACCCTTACCTGTCCATTGCAACGGCTAGGGACTCGCTGAGGCAAAGGGAAGAGGCCAAGAAGAAGCAAGCTGAGCTCACTGAGCTGGAGAACGAGGCCACTGAGCTGAAGCAGAAGAATGAAGAGGAGCGGGTGGCCATCCAGGACATGGAGGCCCTCCTCATCAAGAGGCGGCGGCGCGTCGAGAAGTGCCGCCGCTTGGCGGAGGCTCAGTCGAATTACAAGGCTGTGCTGGAGAAGATGATCAGAGACGCCATGCACCAGTCTGTTGTGTACAAGGAGCAGCTTAGGATGAACCAAGCTGCAACGAGCACTCTCATGGCGAGACTCGAGGCCCAGAGAGCAATGTGTGACTCATCCGAAACCGAGCTCCGGAGGAAGTACCAGCAGAAGGATGAACTGGAGAAGCAGATCAAGCCTTTCACCGATCAAGCAAGGAAGCGGTATCGTGTTGACGATGATGGATTGCTAGAGGAAAGGCACAGCTTAGAAGAAAGGCACAGTGAAAGGGTGAAGTATTTTCCAGGAATAAGACTGAGGAGCAGAAGCCCTCTCAAGCAGGAGCTGAGGGTTTTCCTGGAGGAGGACCAGAGGGCTTCAGATGCATACATCTCCCTAGAGGAAGAGGAAATTGCAGGTGAAACTTCAACAATGGGAAATTTCAGGAATTCACCTTTCAAGGTGATAAACTTCCCAAGGAGGTCCATGGAAGACAACACAGTTGACACTGAGAGAGGAAGAGCATCAGTGAGGGAGAAGCTGGAGCATCTGGCGATCAAAGAACGGCAGCGCGGCAGAAGGAGAGAAAGGACCATGTCATCAAGGGGATCAAGGGCAACTAGCACTCCTGTGAGGTCAAGAGATGGCAATGGCAAGGGCAAAGCAGCCATGGTGCAATGTGAGTCTGAGACTGAAAGATCTCAGACAGTTTCAGTGCCAAGGACATCCTCAGTTCCTCCAAGTCCTCCTTACAGAGTAACTGGCATGTATGGAACACCTAGATATCCTGCAGAGAAATCGGTGCTATTGAAAAAGAATAATGTGATTCATCGGCAAGGCGTCGGTCGATCCGAAGGCGACGCAAACATGAACCACACCGGCAAAGGAACTGTGGATAAGTGGCTTCAAATGCTCATGGAGGATCAGCAGCAGCAAGAAGATCCTGCAGCAGCATATCATTCTTCTGAAGATCACAACACTGCTGATGAAATCGCTTCAGACGAGCACCAAATGCAAAGCAGAATTGATGATGAGAGCTGCAGGAATGAGATCACCGAATGCTCCGATGAGATCGTCGAGGTCGGTGGCGATGGTGCTACTGAGCAGCAGGACAGGTGCAGGAACAGCTTTGAGATCAAGGAGAGGGGAGAGGAGAAGAAGATCTGGTTCCCAAGGTCTGACAGCTCCAGGGGTTTCAGGTCTCTGCCTTCCTCACCTTCCAAGATCCTTGGAATGAGAAGGGGTGTGGAGTGCATGAGCAGGAAGCCCAAGGTGGTCGGCGACGACAATGGCAGATACGGCTATGAAGATTCAGTGTCCACAAGCAGCAGCAAGTTCCTCACCAGGTGCAAGCAAGCCATCAAGAAAGCAGTGAACAAATAA
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| Protein seq | MRAKDLNEMFPVADAEAAPTANPRGFANLLWKQLDHLGNAGFDPALFRVDAYGNVLYLHADSASPLAWDIDHWFPCARGGRTVPSNLRIVQAQVCRKKHNKLEFLVPWWDLQLGISVNQFLSIFASKNADFRNRAFTFLFVDGASEELTSMQAVEAHAFPHHFSDLTKKVGLAPAAIVSSRGSDSSVLKSLDANRPLRPNYPLIAAKKFTGEKDENFNVPMSNHGPNSTKENNNPDADGYISNPYLSIATARDSLRQREEAKKKQAELTELENEATELKQKNEEERVAIQDMEALLIKRRRRVEKCRRLAEAQSNYKAVLEKMIRDAMHQSVVYKEQLRMNQAATSTLMARLEAQRAMCDSSETELRRKYQQKDELEKQIKPFTDQARKRYRVDDDGLLEERHSLEERHSERVKYFPGIRLRSRSPLKQELRVFLEEDQRASDAYISLEEEEIAGETSTMGNFRNSPFKVINFPRRSMEDNTVDTERGRASVREKLEHLAIKERQRGRRRERTMSSRGSRATSTPVRSRDGNGKGKAAMVQCESETERSQTVSVPRTSSVPPSPPYRVTGMYGTPRYPAEKSVLLKKNNVIHRQGVGRSEGDANMNHTGKGTVDKWLQMLMEDQQQQEDPAAAYHSSEDHNTADEIASDEHQMQSRIDDESCRNEITECSDEIVEVGGDGATEQQDRCRNSFEIKERGEEKKIWFPRSDSSRGFRSLPSSPSKILGMRRGVECMSRKPKVVGDDNGRYGYEDSVSTSSSKFLTRCKQAIKKAVNK
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.0 | 0.749360 | None |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_01g0176500 | RBH | 0.0 | 0.0 | 3.363760 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os01g08150 | RBH | 0.0 | 0.0 | 0.547924 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os01g0176500 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_01g0005610 | RBH | 0.0 | 10.685126 | 0.711793 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_01g0005300 | RBH | 0.0 | 4.282649 | 0.239162 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_01g0005560 | RBH | 0.0 | 12.604956 | 0.496326 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_02g0028900 | RBH | 0.0 | 0.0 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_01g0005430 | RBH | 0.0 | 15.006059 | 1.725940 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_01G0069900 | RBH | 5.907762 | 2.089901 | 2.162407 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_01g0005380 | RBH | 0.0 | 0.783449 | 0.141549 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_01G0070200 | RBH | 5.647761 | 0.0104915 | 16.76776 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_01g0005190 | RBH | 0.0 | 0.093866 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_01g0005380 | RBH | 0.0 | 6.778939 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_01g0005440 | RBH | 0.0 | 6.654296 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_01g0005370 | RBH | 0.0 | 0.684783 | 0.0 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_01g0005360 | RBH | 0.0 | 6.243773 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_01G005400 | RBH | 0.0 | 6.487444 | 0.644300 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_01g0005280 | RBH | 0.0 | 7.378828 | 0.918116 |
