Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsARC_01g0002880 | OGI:01007630 | 16/16 | ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | Chr01:2356537-2358791 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | TTCACATAGAAGATCATTTCAGCCATCACAATTCACAATTCCACACAAAATTCAGATAAGCAGCACCAAGAAACGGTAAAAGGCTAGTAAAATAAGCACTGATATCATAAGTGCCAATAGCCTCAGATTGACCACTGGGCATCAGAAATCGCACATTGCAGGGAAGGCAGTTTCCCCGGTTGTTGCATTGCTTCGCATAATTCTAGTAATCCTTGTTACATATGCAGGTATGCTAAAAGGCTAAGCTACCAAAAATCCTGCCAAATTGCTCGGCAATTTCTCATTGCCGGACGAAGTCCTTCAGCTTGGTCATCCACCCGACGTACTCCTTGGTTTGCTTGGTCACCATGTAATCGTGCATGTAGTTGGTGGTCGGCAGAGTGATCCCTCTTTGCTCCAGGTACTTGAATAGGCCCTTCTGCACATTCACCGGTAGCTCGCTGTAGTAGAAAGAAGCGATTCGATGAGGATTATGAGTAGAGATGGTGCTCAAGAAGGATTGAGAAATGGAGATTGAAACCGGTGTTCTTACGTGAATTCAGGGCCCTCGTAAGGGAATTTCTCATCTCCTTCTGTGGCTGCGTTCTCCACTATTAACATGTCGTCGATGGTGATCTCCTCACGAAAGGCTGTGCAGGTGAACTCAAGTTTGGGCCCAGAGCCCTTGGAGACTGTCACCTTTAGAGACACGCTGCTATCTCCAGCGCTCTCGTCTTCCTCTTCATCTTCATCATCCTTGCTAGCATTCTTGCCCTCACCCTCGGCTTCTTCGTCGTCAAACTCAGGGCCCCCTTCTAAATTTGGCATGCTGACAATGACCTCAATCTTCTCATCTTTGTAGTCCCTTTTCAGAATAACCACACTCATCCCTTCTTCGTCAAGGATTTCAAAAGGGAAGTTTTCCGGAACAGGTTCCTGTTGCAAGAAAGATAAATGGGTAAGATGAAACACCTTTGGAATATTCAATAACAGATGTTAAATGCCTTGATGTCAAACCTGCATGTCAATTTTACAGCTAGATGTCACACCTGCAGAGGTAATATTACAGCTTTGATGTCCATTCATTCATTCACTTTTCAGGGTTATGCAGAAAGGATTATTCAACCTCAATGCCAGTTCTAATATTGCCCTTGCCTGGAGCTTCCAATTGATCAAAATATTGAACCCAAACCATCACAAACTCTATCATCAGTCCCACTATTTGTCTATTCCAAAGTCATACCGCTTTAAAAGAATCATTAGAATGGTTCAATGATTTGAAACAAGGAAAACGCTTAAGAAACGATTTGCTTACACAAGGGTATAAGACTTCTCTCCAGACATTCAGGTCAAACATGACAAAATAGATGCAAGAAAGTTATAGGATCCTTGAAAACCAGATGAGCATTGCATAGCTGACGCAGGGAATAAATCTAAAGTCTTAACAACTCTCTGAATGCCAGTTGCAATAAACAATTGCCAATAAACTATCACTTAAAGAATTCAGACACCTAGACTAATGGCTTAAGATAAAAAATAAATAAACAGAAGATATCGATGCATGAGTAAGATGAACAAATTCTCTATTCTCTAACTGCCACCAGCATACCGAAGTAACAATACGTCATCAGTCACCAATTGATCTGTATTAAGAGAGAAGCGCCGAACGAGACTGCAAAAGTAATCTATTTTAGGTGAAAGCAATCGTAAATATATTTCCCAATTGTAGTGTTCAATTAGCTAGAGATGCCCATTATTTATCAACCAGTTACCAGTCGACGTGTAGCATTCACGCAAGACAGCACTATAATTTGACAAAACCTCACCAAAAATTCATCATCCCCACAAGACAAAATCACTGTCCAATATGACAAAATAATATCTCATTTGGCGCGCCAAATCAGTCAAGTTTCGATGACAGTAGTACAGTATCGCGCAAGAGAAGAGCGCGCGTCTCACTCTCACCTGCTCGTCGATGGCGAGGTAGTCCTGCGCCTCCCTGATCTCCGCGTCGATGGCTCCGGGGAGGTTCCCGGCGCCGGACCCCTTCTTCTTCTTCGCCTTGACCTTGCTCTCCATCACCACCTGCCCCGAAGAGGCGCTCGACCCCTGCGCCGCCGCGCGCAGGGAACCCGCGAGCGGCTGCCGTTGCAGCGAGAGCAAGGGTGTTCCTGCGCGGGACGCGGACGAGACGCCGGGGAGGAAGGCGGCGGCGGTGGTGGCGGCGGCGGCGGCGGCGGCGGAGACGAAGGCCATGGCGAACGCGGTGGCGAAGC
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| CDS seq | ATGGCCTTCGTCTCCGCCGCCGCCGCCGCCGCCGCCACCACCGCCGCCGCCTTCCTCCCCGGCGTCTCGTCCGCGTCCCGCGCAGGAACACCCTTGCTCTCGCTGCAACGGCAGCCGCTCGCGGGTTCCCTGCGCGCGGCGGCGCAGGGGTCGAGCGCCTCTTCGGGGCAGGTGGTGATGGAGAGCAAGGTCAAGGCGAAGAAGAAGAAGGGGTCCGGCGCCGGGAACCTCCCCGGAGCCATCGACGCGGAGATCAGGGAGGCGCAGGACTACCTCGCCATCGACGAGCAGATTGAGGTCATTGTCAGCATGCCAAATTTAGAAGGGGGCCCTGAGTTTGACGACGAAGAAGCCGAGGGTGAGGGCAAGAATGCTAGCAAGGATGATGAAGATGAAGAGGAAGACGAGAGCGCTGGAGATAGCAGCGTGTCTCTAAAGGTGACAGTCTCCAAGGGCTCTGGGCCCAAACTTGAGTTCACCTGCACAGCCTTTCGTGAGGAGATCACCATCGACGACATGTTAATAGTGGAGAACGCAGCCACAGAAGGAGATGAGAAATTCCCTTACGAGGGCCCTGAATTCACCGAGCTACCGGTGAATGTGCAGAAGGGCCTATTCAAGTACCTGGAGCAAAGAGGGATCACTCTGCCGACCACCAACTACATGCACGATTACATGGTGACCAAGCAAACCAAGGAGTACGTCGGGTGGATGACCAAGCTGAAGGACTTCGTCCGGCAATGA
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| Protein seq | MAFVSAAAAAAATTAAAFLPGVSSASRAGTPLLSLQRQPLAGSLRAAAQGSSASSGQVVMESKVKAKKKKGSGAGNLPGAIDAEIREAQDYLAIDEQIEVIVSMPNLEGGPEFDDEEAEGEGKNASKDDEDEEEDESAGDSSVSLKVTVSKGSGPKLEFTCTAFREEITIDDMLIVENAATEGDEKFPYEGPEFTELPVNVQKGLFKYLEQRGITLPTTNYMHDYMVTKQTKEYVGWMTKLKDFVRQ |
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| Function | Uncharacterized protein At2g39795, mitochondrial [UniProtKB/Swiss-Prot:Q8W487] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsARC_01g0002880 | OsARC_01g0002880.01 | Chr01 | 2356537 | 2358771 | - | NAM | ||
| CDS seq | ATGGCCTTCGTCTCCGCCGCCGCCGCCGCCGCCGCCACCACCGCCGCCGCCTTCCTCCCCGGCGTCTCGTCCGCGTCCCGCGCAGGAACACCCTTGCTCTCGCTGCAACGGCAGCCGCTCGCGGGTTCCCTGCGCGCGGCGGCGCAGGGGTCGAGCGCCTCTTCGGGGCAGGTGGTGATGGAGAGCAAGGTCAAGGCGAAGAAGAAGAAGGGGTCCGGCGCCGGGAACCTCCCCGGAGCCATCGACGCGGAGATCAGGGAGGCGCAGGACTACCTCGCCATCGACGAGCAGATTGAGGTCATTGTCAGCATGCCAAATTTAGAAGGGGGCCCTGAGTTTGACGACGAAGAAGCCGAGGGTGAGGGCAAGAATGCTAGCAAGGATGATGAAGATGAAGAGGAAGACGAGAGCGCTGGAGATAGCAGCGTGTCTCTAAAGGTGACAGTCTCCAAGGGCTCTGGGCCCAAACTTGAGTTCACCTGCACAGCCTTTCGTGAGGAGATCACCATCGACGACATGTTAATAGTGGAGAACGCAGCCACAGAAGGAGATGAGAAATTCCCTTACGAGGGCCCTGAATTCACCGAGCTACCGGTGAATGTGCAGAAGGGCCTATTCAAGTACCTGGAGCAAAGAGGGATCACTCTGCCGACCACCAACTACATGCACGATTACATGGTGACCAAGCAAACCAAGGAGTACGTCGGGTGGATGACCAAGCTGAAGGACTTCGTCCGGCAATGA
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| Protein seq | MAFVSAAAAAAATTAAAFLPGVSSASRAGTPLLSLQRQPLAGSLRAAAQGSSASSGQVVMESKVKAKKKKGSGAGNLPGAIDAEIREAQDYLAIDEQIEVIVSMPNLEGGPEFDDEEAEGEGKNASKDDEDEEEDESAGDSSVSLKVTVSKGSGPKLEFTCTAFREEITIDDMLIVENAATEGDEKFPYEGPEFTELPVNVQKGLFKYLEQRGITLPTTNYMHDYMVTKQTKEYVGWMTKLKDFVRQ
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| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsARC_01g0002880 | OsARC_01g0002880.02 | Chr01 | 2356618 | 2358791 | - | IsoSeq | ||
| CDS seq | CTTCGCCACCGCGTTCGCCATGGCCTTCGTCTCCGCCGCCGCCGCCGCCGCCGCCACCACCGCCGCCGCCTTCCTCCCCGGCGTCTCGTCCGCGTCCCGCGCAGGAACACCCTTGCTCTCGCTGCAACGGCAGCCGCTCGCGGGTTCCCTGCGCGCGGCGGCGCAGGGGTCGAGCGCCTCTTCGGGGCAGGTGGTGATGGAGAGCAAGGTCAAGGCGAAGAAGAAGAAGGGGTCCGGCGCCGGGAACCTCCCCGGAGCCATCGACGCGGAGATCAGGGAGGCGCAGGACTACCTCGCCATCGACGAGCAGGAACCTGTTCCGGAAAACTTCCC
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| Protein seq | LRHRVRHGLRLRRRRRRRHHRRRLPPRRLVRVPRRNTLALAATAAARGFPARGGAGVERLFGAGGDGEQGQGEEEEGVRRREPPRSHRRGDQGGAGLPRHRRAGTCSGKLP |
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
| A3 | Chr01 | 2357361 | 2358481 | - | OsARC_01g0002880.02 | OsARC_01g0002880.01,OsARC_01g0002880.02 | All |
Expression
| Leaf | Root | Panicle | |
| FPKM | 2.031633 | 0.000000 | None |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_01g0143800 | RBH | 11.564586 | 15.250522 | 9.918973 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os01g05060 | RBH | 6.939533 | 9.121998 | 2.342811 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os01g0143800 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_01g0003020 | RBH | 6.945584 | 2.087151 | 5.474614 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_01g0002930 | RBH | 1.917355 | 0.000000 | 2.429711 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_01g0003050 | RBH | 12.026545 | 3.771408 | 13.950805 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_01g0002840 | SBH | 0.097512 | 0.959149 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_01g0003000 | RBH | 38.692730 | 4.715397 | 21.863115 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_01G0040300 | RBH | 40.0825365 | 10.4404575 | 7.734124 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_01g0002920 | RBH | 4.682256 | 0.480129 | 1.518732 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_01G0041000 | RBH | 32.6677715 | 9.760967 | 9.8480315 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_01g0002820 | RBH | 1.735301 | 0.763614 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_01g0002970 | RBH | 2.615238 | 0.000000 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_01g0003010 | RBH | 12.433641 | 18.753586 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_01g0003060 | RBH | 2.142692 | 0.000000 | 1.613799 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_01g0002920 | RBH | 3.780226 | 5.886641 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_01G003110 | RBH | 3.743675 | 0.814781 | 2.667458 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_01g0002950 | RBH | 19.218555 | 19.964857 | 13.991696 |
