Basic Info

Gene ID OGI # | Score   Accession | Assembly | Annotation Location Links
Os01g0143800 OGI:01007630 | 16/16 Nipponbare | IRGSP 1.0 | RAP-db Chr01:2374541-2376761
Gene Symbol -
DNA seq

AAGCAGCACCAAGAAACGGTAAAAGGCTAGTAAAATAAGCACTGATATCATAAGTGCCAATAGCCTCAGATTGACTACTGGGCATCAGAAATCGCACATTGCAGGGAAGGCAGTTTCCCCGGTTGTTGCATTGCTTCGCATAATTCTAGTAATCCTTGTTACATATGCAGGTATGCTAAAAGGCTAAGCTACCAAAAATCCTGCCAAATTGCTCGGCAATTTCTCATTGCCGGACGAAGTCCTTCAGCTTGGTCATCCACCCGACGTACTCCTTGGTTTGCTTGGTCACCATGTAATCGTGCATGTAGTTGGTGGTCGGCAGAGTGATCCCTCTTTGCTCCAGGTACTTGAATAGGCCCTTCTGCACATTCACCGGTAGCTCGCTGTAGTAGAAAGAAGCGATTCGATGAGGATTATGAGTAGAGATGGTGCTCAAGAAGGATTGAGAAATGGAGATTGAAACCGGTGTTCTTACGTGAATTCAGGGCCCTCGTAAGGGAATTTCTCATCTCCTTCTGTGGCTGCATTCTCCACTATTAACATGTCGTCGATGGTGATCTCCTCACGAAAGGCTGTGCAGGTGAACTCAAGTTTGGGCCCAGAGCCCTTGGAGACTGTCACCTTTAGAGACACGCTGCTATCTCCAGCGCTCTCGTCTTCCTCTTCATCTTCATCATCCTTGCTAGCATTCTTGCCCTCACCCTCGGCTTCTTCGTCGTCAAACTCAGGGCCCCCTTCTAAATTTGGCATGCTGACAATGACCTCAATCTTCTCATCTTTGTAGTCCCTTTTCAGAATAACCACACTCATCCCTTCTTCGTCAAGGATTTCAAAAGGGAAGTTTTCCGGAACAGGTTCCTGTTGCAAGAAAGATAAATGGGTAAGATGAAACACCTTTGGAATATTCAATAACAGATGTTAAATGCCTTGATGTCAAACCAGCATGTCAATTTTACAGCTAGATGTCACACCTGCAGAGGTAATTTTACAGCTTTGATGTCCATTCATTCATTCACTTTTCAGGGTTATGCGGAAAGGATTATTCAACCTCAATGCCAGTTCTAATATTGCCCTTGCCTGGAGCTTCCAATTGATCAAAATATTGAACCCAAACCATCACAAACTCTATCATCAGTCCCACTATTTGTCTATTCCAAAGTCATACCGCTTTAAAAGAATCATTAGAATGGTTCAATGATTTGAAACAAGGAAAACGCTTAAGAAACGATTTGCTTACACAAGGGTATAAGACTTCTCTCCAGACATTCAGGTCAAACATGACAAAATAGATGCAAGAAAGTTATAGGATCCTTGAAAACCAGATGAGCATTGCATAGCTGACGCAGGGAATAAATCTAAAGTCTTAACAACTCTCTGAATGCCAGTTGCAATAAACAATTGCCAATAAACTATCACTTAAAGAATTCAGACACCTAGACTAATGGCTTAAGATAAAATAAATAAATAGAAGATATCGATGCATGAGTAAGATGAACAAATTCTCTATTCTCTAACTGCCACCAGCATACCGAAGTAACAATACGTCATCAGTCACCAATTGATCTGTATTAAGAGAGAAGCGCCGAACGAGACTGCAAAAGTAATCTATTTTAGGTGAAAGCAATCGTAAATATATTTCCCAATTGTAGTGTTCAATTAGCTAGAGATGCCCATTATTTATCAACCAGTTACCAGTCGACGTGTAGCATTCACGCAAGACAGCACTATAATTTGACAAAACCTCACCAAAAATTCATCATCCCCACAAGACAAAATCACTGTCCAATATGACAAAATAATATCTCATTTGGCGCGCCAAATCAGTCAAGTTTCGATGACAGTAGTACAGTATCGCGCAAGAGAAGAGCGCGCGTCTCACTCTCACCTGCTCGTCGATGGCGAGGTAGTCCTGCGCCTCCCTGATCTCCGCGTCGATGGCTCCGGGGAGGTTCCCGGCGCCGGACCCCTTCTTCTTCTTCGCCTTGACCTTGCTCTCCATCACCACCTGCCCCGAAGAGGCGCTCGACCCCTGCGCCGCCGCGCGCAGGGAACCCGCGAGCGGCTGCCGTTGCAGCGAGAGCAAGGGTGTTCCTGCGCGGGACGCGGACGAGACGCCGGGGAGGAAGGCGGCGGCGGCGGTGGCGGCGGCGGCGGCGGAGACGAAGGCCATGGCGAACGCGGTGGCGAAGCGAAGGAGAGAAGAGAGGAGAGGGGAGGGGAT

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CDS seq

ATGGCCTTCGTCTCCGCCGCCGCCGCCGCCACCGCCGCCGCCGCCTTCCTCCCCGGCGTCTCGTCCGCGTCCCGCGCAGGAACACCCTTGCTCTCGCTGCAACGGCAGCCGCTCGCGGGTTCCCTGCGCGCGGCGGCGCAGGGGTCGAGCGCCTCTTCGGGGCAGGTGGTGATGGAGAGCAAGGTCAAGGCGAAGAAGAAGAAGGGGTCCGGCGCCGGGAACCTCCCCGGAGCCATCGACGCGGAGATCAGGGAGGCGCAGGACTACCTCGCCATCGACGAGCAGGAACCTGTTCCGGAAAACTTCCCTTTTGAAATCCTTGACGAAGAAGGGATGAGTGTGGTTATTCTGAAAAGGGACTACAAAGATGAGAAGATTGAGGTCATTGTCAGCATGCCAAATTTAGAAGGGGGCCCTGAGTTTGACGACGAAGAAGCCGAGGGTGAGGGCAAGAATGCTAGCAAGGATGATGAAGATGAAGAGGAAGACGAGAGCGCTGGAGATAGCAGCGTGTCTCTAAAGGTGACAGTCTCCAAGGGCTCTGGGCCCAAACTTGAGTTCACCTGCACAGCCTTTCGTGAGGAGATCACCATCGACGACATGTTAATAGTGGAGAATGCAGCCACAGAAGGAGATGAGAAATTCCCTTACGAGGGCCCTGAATTCACCGAGCTACCGGTGAATGTGCAGAAGGGCCTATTCAAGTACCTGGAGCAAAGAGGGATCACTCTGCCGACCACCAACTACATGCACGATTACATGGTGACCAAGCAAACCAAGGAGTACGTCGGGTGGATGACCAAGCTGAAGGACTTCGTCCGGCAATGA

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Protein seq

MAFVSAAAAATAAAAFLPGVSSASRAGTPLLSLQRQPLAGSLRAAAQGSSASSGQVVMESKVKAKKKKGSGAGNLPGAIDAEIREAQDYLAIDEQEPVPENFPFEILDEEGMSVVILKRDYKDEKIEVIVSMPNLEGGPEFDDEEAEGEGKNASKDDEDEEEDESAGDSSVSLKVTVSKGSGPKLEFTCTAFREEITIDDMLIVENAATEGDEKFPYEGPEFTELPVNVQKGLFKYLEQRGITLPTTNYMHDYMVTKQTKEYVGWMTKLKDFVRQ

Function Uncharacterized protein At2g39795, mitochondrial [UniProtKB/Swiss-Prot:Q8W487]

Transcripts

Gene Transcript Chromosome Start End Strand Source
Os01g0143800 Os01t0143800-01 Chr01 2374541 2376761 - irgsp1_rep
CDS seq

ATGGCCTTCGTCTCCGCCGCCGCCGCCGCCACCGCCGCCGCCGCCTTCCTCCCCGGCGTCTCGTCCGCGTCCCGCGCAGGAACACCCTTGCTCTCGCTGCAACGGCAGCCGCTCGCGGGTTCCCTGCGCGCGGCGGCGCAGGGGTCGAGCGCCTCTTCGGGGCAGGTGGTGATGGAGAGCAAGGTCAAGGCGAAGAAGAAGAAGGGGTCCGGCGCCGGGAACCTCCCCGGAGCCATCGACGCGGAGATCAGGGAGGCGCAGGACTACCTCGCCATCGACGAGCAGGAACCTGTTCCGGAAAACTTCCCTTTTGAAATCCTTGACGAAGAAGGGATGAGTGTGGTTATTCTGAAAAGGGACTACAAAGATGAGAAGATTGAGGTCATTGTCAGCATGCCAAATTTAGAAGGGGGCCCTGAGTTTGACGACGAAGAAGCCGAGGGTGAGGGCAAGAATGCTAGCAAGGATGATGAAGATGAAGAGGAAGACGAGAGCGCTGGAGATAGCAGCGTGTCTCTAAAGGTGACAGTCTCCAAGGGCTCTGGGCCCAAACTTGAGTTCACCTGCACAGCCTTTCGTGAGGAGATCACCATCGACGACATGTTAATAGTGGAGAATGCAGCCACAGAAGGAGATGAGAAATTCCCTTACGAGGGCCCTGAATTCACCGAGCTACCGGTGAATGTGCAGAAGGGCCTATTCAAGTACCTGGAGCAAAGAGGGATCACTCTGCCGACCACCAACTACATGCACGATTACATGGTGACCAAGCAAACCAAGGAGTACGTCGGGTGGATGACCAAGCTGAAGGACTTCGTCCGGCAATGA

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Protein seq

MAFVSAAAAATAAAAFLPGVSSASRAGTPLLSLQRQPLAGSLRAAAQGSSASSGQVVMESKVKAKKKKGSGAGNLPGAIDAEIREAQDYLAIDEQEPVPENFPFEILDEEGMSVVILKRDYKDEKIEVIVSMPNLEGGPEFDDEEAEGEGKNASKDDEDEEEDESAGDSSVSLKVTVSKGSGPKLEFTCTAFREEITIDDMLIVENAATEGDEKFPYEGPEFTELPVNVQKGLFKYLEQRGITLPTTNYMHDYMVTKQTKEYVGWMTKLKDFVRQ

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Gene Transcript Chromosome Start End Strand Source
Os01g0143800 Os01t0143800-03 Chr01 2374572 2376733 - irgsp1_rep
CDS seq

ATGGCCTTCGTCTCCGCCGCCGCCGCCGCCACCGCCGCCGCCGCCTTCCTCCCCGGCGTCTCGTCCGCGTCCCGCGCAGGAACACCCTTGCTCTCGCTGCAACGGCAGCCGCTCGCGGGTTCCCTGCGCGCGGCGGCGCAGGGGTCGAGCGCCTCTTCGGGGCAGGTGGTGATGGAGAGCAAGGTCAAGGCGAAGAAGAAGAAGGGGTCCGGCGCCGGGAACCTCCCCGGAGCCATCGACGCGGAGATCAGGGAGGCGCAGGACTACCTCGCCATCGACGAGCAGGAACCTGTTCCGGAAAACTTCCCTTTTGAAATCCTTGACGAAGAAGGGATGAGTGTGGTTATTCTGAAAAGGGACTACAAAGATGAGAAGATTGAGGTCATTGTCAGCATGCCAAATTTAGAAGGGGGCCCTGAGTTTGACGACGAAGAAGCCGAGGGTGAGGGCAAGAATGCTAGCAAGGATGATGAAGATGAAGAGGAAGACGAGAGCGCTGGAGATAGCAGCGTGTCTCTAAAGGTGACAGTCTCCAAGGGCTCTGGGCCCAAACTTGAGTTCACCTGCACAGCCTTTCGTGAGGAGATCACCATCGACGACATGTTAATAGTGGAGAATGCAGCCACAGAAGGAGATGAGAAATTCCCTTACGAGGGCCCTGAATTCACCGAGCTACCGGTGAATGTGCAGAAGGGCCTATTCAAGTACCTGGAGCAAAGAGGGATCACTCTGCCGACCACCAACTACATGCACGATTACATGGTGACCAAGCAAACCAAGGAGTACGTCGGGTGGATGACCAAGCTGAAGGACTTCGTCCGGCAATGA

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Protein seq

MAFVSAAAAATAAAAFLPGVSSASRAGTPLLSLQRQPLAGSLRAAAQGSSASSGQVVMESKVKAKKKKGSGAGNLPGAIDAEIREAQDYLAIDEQEPVPENFPFEILDEEGMSVVILKRDYKDEKIEVIVSMPNLEGGPEFDDEEAEGEGKNASKDDEDEEEDESAGDSSVSLKVTVSKGSGPKLEFTCTAFREEITIDDMLIVENAATEGDEKFPYEGPEFTELPVNVQKGLFKYLEQRGITLPTTNYMHDYMVTKQTKEYVGWMTKLKDFVRQ

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Event Type Chromosome Start End Strand Alternative mRNAs Total mRNAs Source

Expression

Leaf Root Panicle
FPKM None None None

Homologues

Genome & Annotation Homologs Type Expression(FPKM)
Leaf Root Panicle
Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) OsNip_01g0143800 RBH 11.564586 15.250522 9.918973
Nipponbare | IRGSP 1.0 | MSU LOC_Os01g05060 RBH 6.939533 9.121998 2.342811
Nipponbare | IRGSP 1.0 | RAP-db Os01g0143300 SBH None None None
Azucena | AzucenaRS1 | Gramene(+IsoSeq) OsAzu_01g0003020 RBH 6.945584 2.087151 5.474614
KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) OsKeNa_01g0002930 RBH 1.917355 0.000000 2.429711
CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) OsCMeo_01g0003050 RBH 12.026545 3.771408 13.950805
ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) OsARC_01g0002880 RBH 2.031633 0.000000 None
PR 106 | Os127742RS1 | Gramene(+IsoSeq) OsPr106_01g0003000 RBH 38.692730 4.715397 21.863115
Minghui 63 | MH63RS3 | HZAU OsMH63_01G0040300 RBH 40.0825365 10.4404575 7.734124
IR 64 | OsIR64RS1 | Gramene(+IsoSeq) OsIR64_01g0002920 RBH 4.682256 0.480129 1.518732
Zhenshan 97 | ZS97RS3 | HZAU OsZS97_01G0041000 RBH 32.6677715 9.760967 9.8480315
LIMA | Os127564RS1 | Gramene(+IsoSeq) OsLima_01g0002820 RBH 1.735301 0.763614 None
KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) OsKYG_01g0002970 RBH 2.615238 0.000000 None
GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) OsGoSa_01g0003010 RBH 12.433641 18.753586 None
LIU XU | Os125827RS1 | Gramene(+IsoSeq) OsLiXu_01g0003060 RBH 2.142692 0.000000 1.613799
LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) OsLaMu_01g0002920 RBH 3.780226 5.886641 None
N22 | OsN22RS2 | Gramene(+IsoSeq) OsN22_01G003110 RBH 3.743675 0.814781 2.667458
NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) OsNaBo_01g0002950 RBH 19.218555 19.964857 13.991696
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National Key Laboratory of Crop Genetic Improvement

Huazhong Agricultural University

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