Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| Os12g0562500 | OGI:12060120 | 16/16 | Nipponbare | IRGSP 1.0 | RAP-db | Chr12:23061642-23065235 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | GGGCGGCGGGTTGACGGAGAAGCAGTACACCAGGGTGTTGCAGTCGCTGGGGCAGTCCGTACACATTCTTGACCTCGAAGGGAAGATCATGTACTGGTGAGATTTTCTTCTTCTTGTTCTTTTTTTTTCATAGCATATGCTAAATGTTTGAGGAAATGCCGTGTTTGATGATGTAGGATGATCTAGTGTTGTCGTGTGCTTTAGATGAAGTGACCCGTATATCGGAATGTATCAGCTTGAGATTTAGGCTATTTTATCTCTTTCCAACTTTGAAACAGTACTAACCCCTAGAAGAGACTCTTGATGCATTTTGGTTGTGGTCTCATTTTCACCATGGATGGATTTAACAAGTTTGAGCAGCAGTACACGCACGTACTTGAAGTAACGAAACCTTACGCGTGTAAGGCTATAGTTTTTTTTTGACTGTGTTGAATCAAATAAATTTTGTAGTGGATGTCTAGATTTTAGTTGCTTTTAGTAATGAGTTTTTGCATTCTTTGAAAGGGAACTTTTACCAGATTGAAGAAGACATTAACTTCGGTAGTACATAGCAAAGCGATAAGGCATGTCGTAAGTTAGTGGATCAAGATCAGTAGTCAAGATTTGAGCTTAACTTGGTAAGCTAACACTGCTTATATGTAGATGTAATTGATATAATATTGTCTGACGCATATTGCTTGTGGATAGAACCATTTAGGAGTACGTTAGAAAAGAAACATAGTTCGATAAGCACATACCTACTCCTCAACTTTGTTATCATAAGCTTTGGTATTTTCTTGCAGTCTGCAATTGTGCACAGATCTTCTCTTCTCCTTCCTCATTAAACCTTGCATTTACTATGACGCAGGAATCGATCTGCAGAGAAACTGTATGGTTATCCAGCATCAGAAGCACTTGGTCAGGATGGCCTCATGCTGCTGATTGATTCCTGTGATATCAATGTGGTAAATGACATCTTCCGACGCATATCTCTGGGTGAGAGTTGGACCGGAAAGTTTCCAGTTAAGAACAGAGCTGGAGATAGATTTTCAGCTGTTGCCACCAACACTCCTTTTTATGATGAGGATGGCAGTTTGGTGGGCATTGTTTGCGTTTCAAGTGATTTGCGCACAATGGAGGAGATAATCAGTGGCCCTTCAATCTGTGCAAGGCCCCATCCAGAATCTTCTAGGACCTACTGTGAAGCTAGTTGCAGCAACAGCAATCGCAAAGCCAGTTTGTTGAGCAGAAGCCCATTTGACTCTCAGCAACCTTTGCAGTCTACTATAGCCTCCAAGATAACAAATTTGGTGAGTTCTTATTTCTAGCAAACAGCAGATATAAATACGAACTGCAATAAAATATTGTCTATGTTTATTTGTTCCTAGCATATTCCTTTTTGATTTTTAGAATAACAACACAGGCTACGAAGGTCACAAATAAAGTTCGTTCTAGAGTCAGGGCAGATGAAAATGGCATTGAGCGGGAAGGTGGTAGCGGTGAGAGTCATTGTTCTGATCGTGATGCCAAGGAGGAGCCAACGTCTAGTGGAACAACTACGCCAAGAGGGGACGCACCACGCGGAGCCTTTGCTACAGAAGAGAGTTCCCCTGGGAAAACTGCCAAAATGAACAGTGATGAATCAGAAGGAAAAGTAGGGTTCCACAGGATCTTGAGTTCAAAGGCAGAGGCACTGCTGAACAAGAAAGGGATATCATGGCCTTGGAAGGGGCGGGATAACGATGGACCTGATGTGAAGAACCAAGCAACCTGGCCGTGGTTGCATGGGGAGCAAGATGGCAGCCAGAATCATCAGAAAATTTCTGATTCTGCCATAACTCAAGATGGTCAAGGTGCTGAATATAACCAACCTAACAAAAATGAGGCATCAGGTTCCTGGTCCTCTTTCAACAATAACAGCACAAGCAGTGCAAGCAGCACGGGTAGTACTAATAGTAGTGCTCTTTACAAAGTAGATCATGAAGCAGATTGTTTGGATTATGAAATCCTGTGGGAAGACCTTGTCATTGGAGAACAAATTGGTCAAGGTAGTCCATTCTCCTTTTTTGAATGCTTCCTTAAAACCTTTGTGCATACAAGTATTGTATGGGAGTTTTTAAATTTTTTATGCACAGTTTCATTATTTCCATAGTATTTGTCCAAACTTGCCTTTTCTGCATAGAGTTAGTTTAGGATACCTACTATGCTCCCCTCTTCATTTTCTAAATCTATATCTGTTGCATAACCTCTTTTTATCAAGACAACTCTATAATTTATCGCTCGACCTTCTGATATTCTAAATAACGTTATTAGCATTTCTTGGCCTTCGAGATGTGATGTTCACCGTTACTATTTATAGTTCTAACTCATTAGAAATTAGTAAAACCTACAATATTATGGAAATAGTATTAGCTACAGTTATGCTCACCATATATGCATATACCCTTACCGTGTAATATCAAATTTATCTACTGTTTTGCTGAATTCTGTTTCTAAGTCCTTAGCTCTAACCTGAGTAGAACCAAACCATATAGTTGCTTTAACTCCTAATGAGAGCCTAGAGCTTTGGGCTCTTTGGATAGTATCAGTTTTAGTATGTTTTAAAATTTGCAGTCATTTTCTAGCTGACCAATCCCTAGGACTTCAAACATTAGGTAAACTTGCATCCACCAAGTAGGTTGCTCTTGAACTTTTCCAAACATTTGTGTTTGGACGCTTGTAAAGCTTCAAATAAGCTTTGTAGGTTAAGCTACTCTTCCAGGATCTCTCCATGTCTAGCCTAGAAACTCTGGAGCTGAAGCTTTTCTAGTGAAGCCATCGTCTATTCAGTTGCTAAGGCTTAGATGAAATTCAAAAATCTCAAAGGAGTGCAAGCATGACTAAAATCATATGAACGATTAAAATACACACCTGTTTGTAGTGTATTATGCTGAATGCCCTTTTAAATTGTGTCCCTCTCAATTTTGATCTCTGCAGGCTCGTGTGGAACAGTATATCATGCTTTGTGGTATGGCTCGGTATGTTCGATTGTTCCAATGTTTCATGAATAAGTGTTATATATTTACTTTTGCTATTAATTTCTTCATTTTCTGTGGCATGTTTTGCAGGATGTGGCTGTTAAAGTTTTCTCTAAGCAAGAATATTCAGAAGAAGTGATACAGACCTTCCGACAAGAGGTAGATTTCCATCTCCAGCTACAACATCTGAAAATAAACCTTGTCTCTCTTTCCAGTTGACTTTCTTTCTGTTGTTAAACCTGATTAGCAGTATAATTGTGATGCTTTCTTTTTAGTTTGAGAGGCTTAAAAGAAACTTGAAATGTAAAGCCAATTCAGGTTTTCAGGATGCCCATAAAACCTATCATTGCCATGGTTGCCAAGTATATTGATCTAAGTAAATATAAAAATAACATACTGAAAAAGTTTGAATATATTTGATGATTCTCAAACATGAATATGAAGTACTTTCAGTTTAAATATTCTACTTTTTGAATGTATATTGTTAATCCTGTGAAGGTATCCCTTATGAAGAAACTACGCCATCCTAATATACTTCTCTTCATGGGTGCGGTTACATCTCCACAACGCCTCTGTATCGTAACAGAGTTCCTCCCAC
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| CDS seq | GGCGGCGGGTTGACGGAGAAGCAGTACACCAGGGTGTTGCAGTCGCTGGGGCAGTCCGTACACATTCTTGACCTCGAAGGGAAGATCATGTACTGGAATCGATCTGCAGAGAAACTGTATGGTTATCCAGCATCAGAAGCACTTGGTCAGGATGGCCTCATGCTGCTGATTGATTCCTGTGATATCAATGTGGTAAATGACATCTTCCGACGCATATCTCTGGGTGAGAGTTGGACCGGAAAGTTTCCAGTTAAGAACAGAGCTGGAGATAGATTTTCAGCTGTTGCCACCAACACTCCTTTTTATGATGAGGATGGCAGTTTGGTGGGCATTGTTTGCGTTTCAAGTGATTTGCGCACAATGGAGGAGATAATCAGTGGCCCTTCAATCTGTGCAAGGCCCCATCCAGAATCTTCTAGGACCTACTGTGAAGCTAGTTGCAGCAACAGCAATCGCAAAGCCAGTTTGTTGAGCAGAAGCCCATTTGACTCTCAGCAACCTTTGCAGTCTACTATAGCCTCCAAGATAACAAATTTGGCTACGAAGGTCACAAATAAAGTTCGTTCTAGAGTCAGGGCAGATGAAAATGGCATTGAGCGGGAAGGTGGTAGCGGTGAGAGTCATTGTTCTGATCGTGATGCCAAGGAGGAGCCAACGTCTAGTGGAACAACTACGCCAAGAGGGGACGCACCACGCGGAGCCTTTGCTACAGAAGAGAGTTCCCCTGGGAAAACTGCCAAAATGAACAGTGATGAATCAGAAGGAAAAGTAGGGTTCCACAGGATCTTGAGTTCAAAGGCAGAGGCACTGCTGAACAAGAAAGGGATATCATGGCCTTGGAAGGGGCGGGATAACGATGGACCTGATGTGAAGAACCAAGCAACCTGGCCGTGGTTGCATGGGGAGCAAGATGGCAGCCAGAATCATCAGAAAATTTCTGATTCTGCCATAACTCAAGATGGTCAAGGTGCTGAATATAACCAACCTAACAAAAATGAGGCATCAGGTTCCTGGTCCTCTTTCAACAATAACAGCACAAGCAGTGCAAGCAGCACGGGTAGTACTAATAGTAGTGCTCTTTACAAAGTAGATCATGAAGCAGATTGTTTGGATTATGAAATCCTGTGGGAAGACCTTGTCATTGGAGAACAAATTGGTCAAGGCTCGTGTGGAACAGTATATCATGCTTTGTGGTATGGCTCGGATGTGGCTGTTAAAGTTTTCTCTAAGCAAGAATATTCAGAAGAAGTGATACAGACCTTCCGACAAGAGGTATCCCTTATGAAGAAACTACGCCATCCTAATATACTTCTCTTCATGGGTGCGGTTACATCTCCACAACGCCTCTGTATCGTAACAGAGTTCCTCCCAC
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| Protein seq | GGGLTEKQYTRVLQSLGQSVHILDLEGKIMYWNRSAEKLYGYPASEALGQDGLMLLIDSCDINVVNDIFRRISLGESWTGKFPVKNRAGDRFSAVATNTPFYDEDGSLVGIVCVSSDLRTMEEIISGPSICARPHPESSRTYCEASCSNSNRKASLLSRSPFDSQQPLQSTIASKITNLATKVTNKVRSRVRADENGIEREGGSGESHCSDRDAKEEPTSSGTTTPRGDAPRGAFATEESSPGKTAKMNSDESEGKVGFHRILSSKAEALLNKKGISWPWKGRDNDGPDVKNQATWPWLHGEQDGSQNHQKISDSAITQDGQGAEYNQPNKNEASGSWSSFNNNSTSSASSTGSTNSSALYKVDHEADCLDYEILWEDLVIGEQIGQGSCGTVYHALWYGSDVAVKVFSKQEYSEEVIQTFRQEVSLMKKLRHPNILLFMGAVTSPQRLCIVTEFLP |
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| Function | Probable serine/threonine-protein kinase SIS8 [UniProtKB/Swiss-Prot:Q9C9U5] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| Os12g0562500 | Os12t0562500-00 | Chr12 | 23061642 | 23065235 | + | irgsp1_rep | ||
| CDS seq | GGCGGCGGGTTGACGGAGAAGCAGTACACCAGGGTGTTGCAGTCGCTGGGGCAGTCCGTACACATTCTTGACCTCGAAGGGAAGATCATGTACTGGAATCGATCTGCAGAGAAACTGTATGGTTATCCAGCATCAGAAGCACTTGGTCAGGATGGCCTCATGCTGCTGATTGATTCCTGTGATATCAATGTGGTAAATGACATCTTCCGACGCATATCTCTGGGTGAGAGTTGGACCGGAAAGTTTCCAGTTAAGAACAGAGCTGGAGATAGATTTTCAGCTGTTGCCACCAACACTCCTTTTTATGATGAGGATGGCAGTTTGGTGGGCATTGTTTGCGTTTCAAGTGATTTGCGCACAATGGAGGAGATAATCAGTGGCCCTTCAATCTGTGCAAGGCCCCATCCAGAATCTTCTAGGACCTACTGTGAAGCTAGTTGCAGCAACAGCAATCGCAAAGCCAGTTTGTTGAGCAGAAGCCCATTTGACTCTCAGCAACCTTTGCAGTCTACTATAGCCTCCAAGATAACAAATTTGGCTACGAAGGTCACAAATAAAGTTCGTTCTAGAGTCAGGGCAGATGAAAATGGCATTGAGCGGGAAGGTGGTAGCGGTGAGAGTCATTGTTCTGATCGTGATGCCAAGGAGGAGCCAACGTCTAGTGGAACAACTACGCCAAGAGGGGACGCACCACGCGGAGCCTTTGCTACAGAAGAGAGTTCCCCTGGGAAAACTGCCAAAATGAACAGTGATGAATCAGAAGGAAAAGTAGGGTTCCACAGGATCTTGAGTTCAAAGGCAGAGGCACTGCTGAACAAGAAAGGGATATCATGGCCTTGGAAGGGGCGGGATAACGATGGACCTGATGTGAAGAACCAAGCAACCTGGCCGTGGTTGCATGGGGAGCAAGATGGCAGCCAGAATCATCAGAAAATTTCTGATTCTGCCATAACTCAAGATGGTCAAGGTGCTGAATATAACCAACCTAACAAAAATGAGGCATCAGGTTCCTGGTCCTCTTTCAACAATAACAGCACAAGCAGTGCAAGCAGCACGGGTAGTACTAATAGTAGTGCTCTTTACAAAGTAGATCATGAAGCAGATTGTTTGGATTATGAAATCCTGTGGGAAGACCTTGTCATTGGAGAACAAATTGGTCAAGGCTCGTGTGGAACAGTATATCATGCTTTGTGGTATGGCTCGGATGTGGCTGTTAAAGTTTTCTCTAAGCAAGAATATTCAGAAGAAGTGATACAGACCTTCCGACAAGAGGTATCCCTTATGAAGAAACTACGCCATCCTAATATACTTCTCTTCATGGGTGCGGTTACATCTCCACAACGCCTCTGTATCGTAACAGAGTTCCTCCCAC
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| Protein seq | GGGLTEKQYTRVLQSLGQSVHILDLEGKIMYWNRSAEKLYGYPASEALGQDGLMLLIDSCDINVVNDIFRRISLGESWTGKFPVKNRAGDRFSAVATNTPFYDEDGSLVGIVCVSSDLRTMEEIISGPSICARPHPESSRTYCEASCSNSNRKASLLSRSPFDSQQPLQSTIASKITNLATKVTNKVRSRVRADENGIEREGGSGESHCSDRDAKEEPTSSGTTTPRGDAPRGAFATEESSPGKTAKMNSDESEGKVGFHRILSSKAEALLNKKGISWPWKGRDNDGPDVKNQATWPWLHGEQDGSQNHQKISDSAITQDGQGAEYNQPNKNEASGSWSSFNNNSTSSASSTGSTNSSALYKVDHEADCLDYEILWEDLVIGEQIGQGSCGTVYHALWYGSDVAVKVFSKQEYSEEVIQTFRQEVSLMKKLRHPNILLFMGAVTSPQRLCIVTEFLP
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | None | None | None |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_12g0562500 | RBH | 2.693762 | 3.125479 | 3.704637 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os12g37570 | RBH | 2.179900 | 1.133163 | 1.444003 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os11g0678000 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_12g0017360 | RBH | 1.042352 | 11.570944 | 6.791826 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_12g0017480 | SBH | 0.381625 | 4.142974 | 1.681865 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_12g0017850 | RBH | 1.981169 | 7.446720 | 9.866451 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_12g0017170 | SBH | 0.307990 | 0.347670 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_12g0016750 | RBH | 16.643642 | 22.940460 | 15.755850 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_12G0305900 | SBH | 10.520541 | 16.8465615 | 18.998652 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_12g0016670 | SBH | 0.564525 | 1.032068 | 1.463800 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_12G0337500 | RBH | 14.5943 | 15.3629325 | 19.238286 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_12g0016900 | SBH | 0.693524 | 0.248849 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_12g0017140 | SBH | 0.784126 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_12g0017110 | SBH | 14.111374 | 33.977070 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_12g0017100 | SBH | 1.478551 | 0.0 | 2.024333 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_12g0017260 | RBH | 0.466696 | 8.740726 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_12G017030 | SBH | 0.604905 | 5.804376 | 2.604701 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_12g0016700 | SBH | 2.161720 | 15.461743 | 7.265716 |
