Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| Os12g0502300 | OGI:12051490 | 16/16 | Nipponbare | IRGSP 1.0 | RAP-db | Chr12:19138425-19143392 | ||||||||
| Gene Symbol | CYCA2;1, CycA2;1, CycA2;os;1, Orysa;CycA2;1, OsCYCA2;1, CYCA2.2 | ||||||||||
| DNA seq | AACATAATCTCGGTCAAACCAAGCAACCATTTGTTATACAAGCAGGATCATCTTACAATTATCAACCCAAAGGCGGCAGCCTACACACAGTGAGTGTTTTCTTACAATTATCAACTAAAGGCATACTTAAGGTCAAACAAATGCAAGCTATCTCTCCTTTTCTTTTTCTTTTTTTTTTACTGCACGACTCTAAAATGGTCGGGAAACAACACTTCAGGACAACACAACAAATCAGAAAGCAGTCATGGTAATGACTGCTGCTAACGGTTGTTGATTAACAGGAAACTGATACCATTGCCTTTGTCAGCTGAAGAGTGACTGCCCCAGCTCCGGTGATGTCAGGTTGGCTACACACTCAAACTGCACACGAAGTACAATTAAATGGTCACAAAAGATGAACAAATGACCCTTTTTAGTCTAGTACCTCAAGAAGCTGGTGAAGTGGTGATCATGTACCTTTTGTTGCCTATACTTTTCACGTATAGCATTGAGAGGGCAATTACTGGTGTTATGCTGCAGTTCCCGTAGAGCACAGACACATATTTGAATATCAGAGCTTTTGTAAGAAGTGTAGTGCTCAAGAGTATGATTCTGTAAAAAGATACCAAGGTTGAAGATTAGAAAAAATGTTTTGGGGTGATACAGAGGTCGATATAGTGCATATCCTTGTTATACGAACCCATGGAATGTCAGATTGGTCAAGTGTCCATCTTGCAAGAAAGACTGCAGATGCTGCCACCACTGAAGGAAGAAATTTGAGGAAACTGTAATCGATCAGGGTCAGCTCTGCAAGATAATTGGCCAGATATCCCAAGGTAATTGAAGGAACCTGGAAATACAGTTTGAAAATTTGGCGTTCAGGGATATACACATAAAAGGAATGAATGAAAATTGTAGCTGATAAAAGGTCGGGTGCCAATCTTACATTACGAGAAGCCTGTGCGGCTCTAAGGAATCTCCTGATAAAATATAAAGAAAAGCAGGACGGTCATGTTAGTGATAGAACCACAACTTAGATTGGACAAGAAACACCATATGTATGTGGTAACCAAAACTACCTGAGAAATGTTTTTGTTGTTGGAACAGATAGATGAAACCCCATATCATTAAGCACCAGGCCCTCCATTTTCAGCACCTATTGAATCAGGGGGATATCATATCAGCAATGGCAGTTCAATGGCTCTTCTATATACATAAATTAGCAATTTCTTCAGACATCACATTAAACAAATACCTCAGCTTTTGTGTATGTATTGTCAGTTATGAAACAAAATTCTTCAACACGAGGAGCACATATCTCTTCATATTTCCTATAAAAAGAAGGTAGACTTAGCAATACTTCCAATGACATGAAGACAACATGCAATTCCAATGACATGAAGACAACTTGCAGAGTTGTTAGCTTGTACTTTACATTAGCTACAGACTAAGCTGCATCAGCAGCTAGGTAAACCTTTCTATGGTACATTTTGGGAAAATCACATATATGTATCCAAAACTTACGAGGCAATCAGCATGCTTGTTATTCCAAGAAGTTGGAGTTTCTGTCTTTCAATATAATGTTGAGAAAGAAATCGGTCAATAAGATTAATGGTTAGGTAGAGTGTGTCTGGCACAAGCTTATATTCTTCAGAAACCTGAAATGAAGACAATATACAGAACTTCATAAGCTCAGAAGTCATGAACAGTTCATATTATTAAATTAAAATGTACAAAGGATGATCATGGTTTATTATAACAAAAAAGAAAAGGCAGATTCTTCGAATTTTGCAAGAAATGTATAAAGCTTGCTTCTGATGCAGAAGCCAACTACTCATATTCTCACCTCTTCAGTATCTCAGGCTCTCCGCTAAATGATGAGAAGAGTGATTTTATAATCCACAACTTATTCAATTATCTCATATAAACTTTTCATCATTGAAACTATGGTACTTTCAAAGGGAAATGCAAAGGACAAATGGAAAAAGTATAAACAATAATGATTCAATAGAAAGAATGTTCTTGTAGGCTTTTAACCAGATGCAGCATCCAGTATGTAACATTCACATGTAACTATGTATTTCATGTTTGAGTTGCACATACATGAGTTTCTATGTGACATGCAGCGAGATGCTAACGGCCTAACAATAAACGGCTTAAATTCGTTTGAAAAGATAGCAGGGCAGTTTATGTGCAAATTACATCAAGAGAAATCAACCTCAACAAGCCAATCAATGAGAATGCCTCGCATGCCCTTTGTGATGTCACGTTGCAAAGCCTCCATGTAATTTGACCTGGGTCTTCTGATAAGCTGGGAATGGCATAAGCAGAAGATGGAGTTTGAATTCAAACAAGAAGAAAGCACCAATAACACAGGGATGAAACACAACCATGAAAAACTGAAATTACTTTTGTCATACTAGAATGTTTGAAATATGAAGAAACCATGAGCATGTTAAGACAGTAAACAAGATTTTGTTTTTCATCAAAGAACAAAAACATACCTCAGAGGCCATCAGATTTGTGTATATCTCTGAAGCATAGGAAGCACACATTTGAGGATTTCCATTATCATTGTCAATATCTATAAAACCTAAACCACTAGAGTCACCTGGAACAAAATAAATGACTCTTTAGCAATCAGCAGTGTACAGAAAAATTTATATTCATGTTTTTCTTGATTATGACTAGCAAAATACCCGTGCATTGCAAGGGGATTACAGTAAAGCCCAAAAAGCAAAATAAAATTATTACCACTCTCTAATCATCATATCATATTTGGTACAATTGTATACATGTAAGTCGAGCTACACAGTTGCTCTAGCGATAAACAATTGGTATAAATTATCCACATTGTATTTGATTTATATAGTGGACACTGACATCATAGGCCCACATGACACTGGCAGAACCACCACCACCACTACCAACATCTGCAGTAGTAAGTACAGATTATCTACGAATATCTCAGAAGTCAGCAGTGTACAGAAACATTTATAGTCATGGTTTTGTACAGAAACATTATAGTCATGGTTATCTTGATTCTAAGTTCTGTGACAACAGAAAGACAATCAAGAGTATGTTCCTGATAGAAGTGATTGACAACCGGTAGATAACATGACACGCTAAGGGATATATGAATCTTTTTTATAGAATTAGCTGACTTGAAAAGAAAAATCAGTAAGTCCAGATACTCATTGCTAAAAATAAGCACGCAACGTATGCAAAATAACTAACCAGGCTTGGAGTCAGCGAGTTCATGTTTATCCATGGCGTTTCTTGCCTCAAAGAATGCCTCATGGCAATTACTGTCCCTGTTTCGCTCAATATTCTGCAATGACAGTAACCCCTCGTTTTCAAACAAATTTGTGGGTTCCTCTGCTTTTGCCAAAAGCTCCACCTTTTGAGTTTCTTCAGAACTTTTAGAATCAATCACAAATGAAGTTCCAGCAACAGCCGGAGGGGGTAGCTTAGGAACCTTCTTTGCACACTGCTTTTTGCTCGGGATTTGTTTCACCCTTTGGGTGGGCTTTGACTTTTGCTGGAACAAAGGAATAACCTTATCACTCCATCAACAATGTTCATGGAAAATAAAGGTCTAAAAATCATAATAGCATAATGCGATAATGCAGCAGCTCTTGATACCTGCAGCTTGCTCGTGGTGGTGCAATTTTTGGATGAGTTGGCACAGCCGATGTTGGTTACATCCTTGAGCACTGTGCGCCGTTTAGGCTGAGGAGCTGAAGTTGCAGTACTTGCACTAGTGATTTCATCCAAAGCTCCCCTTTTTGTCTTTCCTTTTGCTGTCTGCTTTCGTTCAGTTCTTGCGGGTAGTGATACGGAGGGAGCAAACCCAAACCGTCCACGATTTGCAGCAGCTTGAGCTCGTGTGATTCGACCACTGGGTGCTTGGCAAGCAGTAAGCACCGGATTTTCCTTCCTTCCAGCCATGTGAGCCTGAATGTGTTAAAAGGAAAAAAAATGACATAAGAAATTGTGCAGTTTTGACGCAAAAAAAAGAAAGAAAGAAATTGCACAGTGAGCAATGAAGATATCAACCAAGGCAAATAACTTTATGGAGCTGAATGAGACGGTGTATTAAGCATTAAGTATCAGTGTGAAAAAGAAATCGAACAAGTAGATGCAATGCAGACATAAAACAGTATCAGATCTTATTTGCAAATCTAACAAGATCATATTTACTCACAAGTGCACAAGTTAAACCAAAATTATTCAGTCCCTTCGTAGCATAATTGAGAGAAATAATAGATAATCCCAGGGCATACAGATCGGAATTAGCAGTCAGTTGGCACAAATGTTTACAGTTATGATCTATAATTCAAATCTGAAACCAGATTTATTTGTCCATTTCGTTATGTGCAAAAAAGGCAGCGCTTTCTATAGATTTTATGGCGTTCTTTAAACAAAAGTCCCTTCTAAAACTGCCTTGCAAAATGCCATCTTCATATTCAGGTTAGATTTCCTAACACTTTTGTTTTCTTTCATGGCGTTGAACAGATGCAAAATTAACCTTATGCACCAGATTGTGCCAAGAAACCCTCCAAGTCAAGCTACCATCAGATACTCAACTAAAAACTCACTTTTTTTTTCAAAAAGGATGCCACCCAACCTTAGCCCTAAAGCTGAAATCCTCGCAAACGTTACCAACATGGACCAATCTACGCACATCCCCCATCCTCAGACGCGCACAGATCAAGCAGATCTACCACACAGACGACGGGGCAAGAAGCCAAGAACCCCCCACGAGCGCCGCGAAAATCACCAATGCGTACCAAGAACCCCCAAATGCAAGACCAAATCAAGAACCCCCCACCCCACCCGGCCCCAAATGCCAACCCACCCAAAATTCCCGGAAACAATCGGAGTCACCCACCCCCTCTGCGCGGCGCGGGCACCCGGGACACGGAGAGGCGCTCCCCCGTCCCCCGCGGCCGCCTGCGGCGGCGAGTAGTGCCCTAGAAAAGTAAA
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| CDS seq | ATGGCTGGAAGGAAGGAAAATCCGGTGCTTACTGCTTGCCAAGCACCCAGTGGTCGAATCACACGAGCTCAAGCTGCTGCAAATCGTGGACGGTTTGGGTTTGCTCCCTCCGTATCACTACCCGCAAGAACTGAACGAAAGCAGACAGCAAAAGGAAAGACAAAAAGGGGAGCTTTGGATGAAATCACTAGTGCAAGTACTGCAACTTCAGCTCCTCAGCCTAAACGGCGCACAGTGCTCAAGGATGTAACCAACATCGGCTGTGCCAACTCATCCAAAAATTGCACCACCACGAGCAAGCTGCAGCAAAAGTCAAAGCCCACCCAAAGGGTGAAACAAATCCCGAGCAAAAAGCAGTGTGCAAAGAAGGTTCCTAAGCTACCCCCTCCGGCTGTTGCTGGAACTTCATTTGTGATTGATTCTAAAAGTTCTGAAGAAACTCAAAAGGTGGAGCTTTTGGCAAAAGCAGAGGAACCCACAAATTTGTTTGAAAACGAGGGGTTACTGTCATTGCAGAATATTGAGCGAAACAGGGACAGTAATTGCCATGAGGCATTCTTTGAGGCAAGAAACGCCATGGATAAACATGAACTCGCTGACTCCAAGCCTGGTGACTCTAGTGGTTTAGGTTTTATAGATATTGACAATGATAATGGAAATCCTCAAATGTGTGCTTCCTATGCTTCAGAGATATACACAAATCTGATGGCCTCTGAGCTTATCAGAAGACCCAGGTCAAATTACATGGAGGCTTTGCAACGTGACATCACAAAGGGCATGCGAGGCATTCTCATTGATTGGCTTGTTGAGGTTTCTGAAGAATATAAGCTTGTGCCAGACACACTCTACCTAACCATTAATCTTATTGACCGATTTCTTTCTCAACATTATATTGAAAGACAGAAACTCCAACTTCTTGGAATAACAAGCATGCTGATTGCCTCGAAATATGAAGAGATATGTGCTCCTCGTGTTGAAGAATTTTGTTTCATAACTGACAATACATACACAAAAGCTGAGGTGCTGAAAATGGAGGGCCTGGTGCTTAATGATATGGGGTTTCATCTATCTGTTCCAACAACAAAAACATTTCTCAGGAGATTCCTTAGAGCCGCACAGGCTTCTCGTAATGTTCCTTCAATTACCTTGGGATATCTGGCCAATTATCTTGCAGAGCTGACCCTGATCGATTACAGTTTCCTCAAATTTCTTCCTTCAGTGGTGGCAGCATCTGCAGTCTTTCTTGCAAGATGGACACTTGACCAATCTGACATTCCATGGAATCATACTCTTGAGCACTACACTTCTTACAAAAGCTCTGATATTCAAATATGTGTCTGTGCTCTACGGGAACTGCAGCATAACACCAGTAATTGCCCTCTCAATGCTATACGTGAAAAGTATAGGCAACAAAAGTTTGAGTGTGTAGCCAACCTGACATCACCGGAGCTGGGGCAGTCACTCTTCAGCTGA
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| Protein seq | MAGRKENPVLTACQAPSGRITRAQAAANRGRFGFAPSVSLPARTERKQTAKGKTKRGALDEITSASTATSAPQPKRRTVLKDVTNIGCANSSKNCTTTSKLQQKSKPTQRVKQIPSKKQCAKKVPKLPPPAVAGTSFVIDSKSSEETQKVELLAKAEEPTNLFENEGLLSLQNIERNRDSNCHEAFFEARNAMDKHELADSKPGDSSGLGFIDIDNDNGNPQMCASYASEIYTNLMASELIRRPRSNYMEALQRDITKGMRGILIDWLVEVSEEYKLVPDTLYLTINLIDRFLSQHYIERQKLQLLGITSMLIASKYEEICAPRVEEFCFITDNTYTKAEVLKMEGLVLNDMGFHLSVPTTKTFLRRFLRAAQASRNVPSITLGYLANYLAELTLIDYSFLKFLPSVVAASAVFLARWTLDQSDIPWNHTLEHYTSYKSSDIQICVCALRELQHNTSNCPLNAIREKYRQQKFECVANLTSPELGQSLFS |
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| Function | Cyclin-A2-1 [UniProtKB/Swiss-Prot:Q2QQ96] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| Os12g0502300 | Os12t0502300-01 | Chr12 | 19138425 | 19143392 | - | irgsp1_rep | ||
| CDS seq | ATGGCTGGAAGGAAGGAAAATCCGGTGCTTACTGCTTGCCAAGCACCCAGTGGTCGAATCACACGAGCTCAAGCTGCTGCAAATCGTGGACGGTTTGGGTTTGCTCCCTCCGTATCACTACCCGCAAGAACTGAACGAAAGCAGACAGCAAAAGGAAAGACAAAAAGGGGAGCTTTGGATGAAATCACTAGTGCAAGTACTGCAACTTCAGCTCCTCAGCCTAAACGGCGCACAGTGCTCAAGGATGTAACCAACATCGGCTGTGCCAACTCATCCAAAAATTGCACCACCACGAGCAAGCTGCAGCAAAAGTCAAAGCCCACCCAAAGGGTGAAACAAATCCCGAGCAAAAAGCAGTGTGCAAAGAAGGTTCCTAAGCTACCCCCTCCGGCTGTTGCTGGAACTTCATTTGTGATTGATTCTAAAAGTTCTGAAGAAACTCAAAAGGTGGAGCTTTTGGCAAAAGCAGAGGAACCCACAAATTTGTTTGAAAACGAGGGGTTACTGTCATTGCAGAATATTGAGCGAAACAGGGACAGTAATTGCCATGAGGCATTCTTTGAGGCAAGAAACGCCATGGATAAACATGAACTCGCTGACTCCAAGCCTGGTGACTCTAGTGGTTTAGGTTTTATAGATATTGACAATGATAATGGAAATCCTCAAATGTGTGCTTCCTATGCTTCAGAGATATACACAAATCTGATGGCCTCTGAGCTTATCAGAAGACCCAGGTCAAATTACATGGAGGCTTTGCAACGTGACATCACAAAGGGCATGCGAGGCATTCTCATTGATTGGCTTGTTGAGGTTTCTGAAGAATATAAGCTTGTGCCAGACACACTCTACCTAACCATTAATCTTATTGACCGATTTCTTTCTCAACATTATATTGAAAGACAGAAACTCCAACTTCTTGGAATAACAAGCATGCTGATTGCCTCGAAATATGAAGAGATATGTGCTCCTCGTGTTGAAGAATTTTGTTTCATAACTGACAATACATACACAAAAGCTGAGGTGCTGAAAATGGAGGGCCTGGTGCTTAATGATATGGGGTTTCATCTATCTGTTCCAACAACAAAAACATTTCTCAGGAGATTCCTTAGAGCCGCACAGGCTTCTCGTAATGTTCCTTCAATTACCTTGGGATATCTGGCCAATTATCTTGCAGAGCTGACCCTGATCGATTACAGTTTCCTCAAATTTCTTCCTTCAGTGGTGGCAGCATCTGCAGTCTTTCTTGCAAGATGGACACTTGACCAATCTGACATTCCATGGAATCATACTCTTGAGCACTACACTTCTTACAAAAGCTCTGATATTCAAATATGTGTCTGTGCTCTACGGGAACTGCAGCATAACACCAGTAATTGCCCTCTCAATGCTATACGTGAAAAGTATAGGCAACAAAAGTTTGAGTGTGTAGCCAACCTGACATCACCGGAGCTGGGGCAGTCACTCTTCAGCTGA
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| Protein seq | MAGRKENPVLTACQAPSGRITRAQAAANRGRFGFAPSVSLPARTERKQTAKGKTKRGALDEITSASTATSAPQPKRRTVLKDVTNIGCANSSKNCTTTSKLQQKSKPTQRVKQIPSKKQCAKKVPKLPPPAVAGTSFVIDSKSSEETQKVELLAKAEEPTNLFENEGLLSLQNIERNRDSNCHEAFFEARNAMDKHELADSKPGDSSGLGFIDIDNDNGNPQMCASYASEIYTNLMASELIRRPRSNYMEALQRDITKGMRGILIDWLVEVSEEYKLVPDTLYLTINLIDRFLSQHYIERQKLQLLGITSMLIASKYEEICAPRVEEFCFITDNTYTKAEVLKMEGLVLNDMGFHLSVPTTKTFLRRFLRAAQASRNVPSITLGYLANYLAELTLIDYSFLKFLPSVVAASAVFLARWTLDQSDIPWNHTLEHYTSYKSSDIQICVCALRELQHNTSNCPLNAIREKYRQQKFECVANLTSPELGQSLFS
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | None | None | None |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_12g0502300 | RBH | 0.313017 | 0.000000 | 0.476866 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os12g31810 | RBH | 0.191480 | 0.000000 | 0.167529 |
| Nipponbare | IRGSP 1.0 | RAP-db | NA | NA | NA | NA | NA |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_12g0014250 | RBH | 0.0 | 3.504522 | 0.549266 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_12g0014420 | RBH | 0.0 | 0.947351 | 0.143132 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_12g0014310 | RBH | 0.0 | 0.000000 | 1.110360 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_12g0014120 | RBH | 0.000000 | 0.365666 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_12g0013740 | RBH | 0.000000 | 1.550555 | 1.264752 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_12G0258600 | RBH | 3.5041985 | 3.163942 | 13.4025405 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_12g0013920 | RBH | 0.0 | 0.525071 | 0.107459 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_12G0283100 | RBH | 3.2990195 | 1.58728 | 14.3576165 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_12g0014030 | RBH | 0.0 | 0.212838 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_12g0014230 | RBH | 0.0 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_12g0014200 | RBH | 0.0 | 3.849265 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_12g0014090 | RBH | 0.0 | 0.0 | 0.000000 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_12g0014290 | RBH | 0.0 | 5.946621 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_12G014120 | RBH | 0.0 | 1.465624 | 0.394797 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_12g0013930 | RBH | 0.0 | 5.311028 | 0.704591 |
