Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| Os12g0275400 | OGI:07033710 | 13/16 | Nipponbare | IRGSP 1.0 | RAP-db | Chr12:10136113-10139255 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | GCAAATATAAACATCTCAAGTTACTTGTCAGCGTGATGCGCATAAGGTACAATCATCACCAATCAGTCATCAATGCATAATTAATGTGTTGAACAACCAATGACATATACATCTGAATGAGCCCTTATCCAGTTCTTTGGAGATATTCACACGGGATGATTATGTTATCCAGTATTCCATCTTAGTCAGTTAGCAAATTTGAGAAAAAACAAATTAATGTCTCACCCATATTCTCCATTATGCCTTGTCTACTTAAAGAAGCACTCCAACGGCTAGTTTCACTTGTTCTGCACATGTGGAAAACAGTTAGCACTCTATCTGAGTCGTAATCCCAAGCATTATTACAGAAAAATAAAAGTGCATTACAAAGAAGTCAGACATCTGAGGAAGCATGCAAAGTTCAGAACGGTTCATAAATAACTTCAGACAAGTTCATATATAACCATCAGTCAGTACCATTAACGTAAACACAGCTGCTTCTAGTTGAAGTTGTGCATTTGCATATAGGAATAACCAGATCCAGTGACGTATATTATACAAATCAGTTTATAATGTTAGAATTTATTTTAATAGTCAATAACCAATAGGAACCCATCAGTACAAGAAAGTCGACCTACGTTAGCAAGGCAAGAGCATACTAAAAACCATCTATGAAGATAATAATAAGCTTGACATACTGGTTTAATTATTACATATATTTGAAGCATGATTCACAGTATCTGAAGTCAGAAATTGTAAATTGTGACAGTGATTTGATATTGAGTGAATGGGCTTGTTGTTCAGTGAAACATGGCCTCTGTTTCGTGTTGAATTGAATCATATTTAACCCTAGCAAAAGATAAAATGCCTGAACTCCTGCAGTTCAGTTTCATCTACTTTTGAGTATTTGACGTGTGGAACAATGGCCATGAAACCGGTAACTGACATATCAAGGCCAAATTAACATGCTCATCATATCAGTTCGAACATTGAGAGACGGCATGCCAAAGAAATAATGAGCAGCAAGGAATATTGTACTATTGTGTTCATTTTATGCTACAAGGACCTGATGTGTAATTGAGTGAATGGGCTTGTTGTTCAGTGAAATATGGCATATGTTTCGTGTTGAATTGAATCATATTTAACCCTAGCAAACAAACAAAATAAGATAATATATCCATCCAGATCTAGAAGAGAAGCTAAGGGTTTATGCAAGCAAATATGAGAGAAAAGTGGGATAGAGACAGAGAGAGATGAATGAGAACTGAGATGTGGATGCTCACAGGGTTGTAGCAGGACCACGACACCCTCACATCCACTGCTATGCTCGCAGGTGTGCAGTAGAATCGACGATGCAGGGATCCGGTGGTGGCGGCGGCGGCGGTTGAGGCGGAGACCGAGGATACCGGTCGCTGAAGCAGCTTGTCGAGGGGATTTTACCTGCTCATGTTACAAAATCACTTGAATATATAGTGAATATAAACTGAAACCATTAAATCACCGATCCAGGAACCGACACACACCAAAAAATCAAGAAAGCATTAAAAAGGATAGTAGAAATTGTATGGCAGGAGTTAAAACCGTTTTCTAATATAATTAGAGCATTTGCCTTAAAACTGTTTTTAAGTGGAGCATATCATCATGAAATTTATTAGCCTGAACTTCAAAAATATCAACACCATGCAGTTTATTTTACCAAAATTAGCAGGTGAGCTGTATGTCATTATGAGCATGACTTCACCGACACACAAATGATTTCCCACACCGAGAACTACAAGTCAGTTCACCAAAACCCCCTAAATTCTCATATCTAAGTACGTATCTTTCAAGGCTCAGCATCACCGCAGCACATTATATTATGCAATATGTGGTTAGAACCACTAAAAATACAGATTATGGCTTGAAGGTATATGGATGTTTTTATGCCTTGTTTAGTAAATGGACCAGCTATATACTCAATTGGAAGTAAAAATCAGCGCCGCCGAGCTAATCCTCAATGAGAAGTGAAATAAAAGAGAGAAGACATACATGCTTGATGCTTCATAGGACATCACATTTATGGTCATATTAGGGATGGGGATCAGGTAGAAGCTGGAGGGGTGGTGGAGCAGGGTTTTTGTACCTCTTGGCGGCGTTGACGCTCGAGGTGGATGCGGTGGCAGTGCGTCGATGCAGATCGGCGAGGCTTGTCGATGCAGTTATGGCGTCGCAGATCGGCGAGGCTTGTCGATGCAGTTATGGCGTCGCAGATCGGCGAGGCTTGTCGATGCAGTTATGGCGGCGCGGACGAGTGACGCAAATGCAGTCCCTGGCGAGCTACACCATTTGTCTTTAAAATACTCTGCAAAAGGCTGAAATGCCCACACAAACAGTGTTTCCATGTTCATCTATTTTTGTATTTCCTTGAACTCCTCCTAACAAACAAAAAATAAATATAGAACTATAGCTAACAAAAAAAATCTGATGATAGAGAAAATAAAAGGCTTAGAAGTACATGAACAAACATCAGTAATCCATGTAGATTTATGTTTCAAGTGACATGGGTATTTTGATTTGAATGAGCAGTCAAAATCATATGTGCAGTTTATACTAAATCAACCTAACTCTCAGATCAGAGCAGTTATTAAGAACCAAGCTAAGCACCTATTCTTTCTATGCAATGCCCAAATAAAAAGCTGTGGTAAAAAAGATAAATCCCCCCGCGTGAACTATTAGTTGTGCACTGTGTGAAATAAAATACCCGACCTGTGACACCGCAACCTTTTTACCGAATACTTGCAAATGCACAGAATCTAATCAGCTAAATGTAAGATATAAAAGGCACATTATTTCCCACTGGACTAATATAACACCAGAAATTGCTTAGAACAAATATAGCTGTATTTTCGTCAATAGATGAAGAACCCGGCCAGCCATGAATGCAAGAATGGAATTTAGCAGGAGGGAATTAAAATCTGAATTCACAATAGAAGCCCTATGTAGCGACGATTGCAAGGATTTCCTACTGCATATACCGAGGAGAGGCGCCCGGCGAAGCGTTCCTCCTCGCAGGCGGAGGCGAGGGACCAGGGTGGAGGATGCGCGTAGGGGAGGGATGCGGAGGAGGCACGGCGATGCGGCGGGGAGGCGCCTGACGCGCACTCGCGGCGATGCAGAGGAGGCGC
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| CDS seq | GCGCCTCCTCTGCATCGCCGCGAGTGCGCGTCAGGCGCCTCCCCGCCGCATCGCCGTGCCTCCTCCGCATCCCTCCCCTACGCGCATCCTCCACCCTGGTCCCTCGCCTCCGCCTGCGAGGAGGAACGCTTCGCCGGGCGCCTCTCCTCGCCTTTTGCAGAGTATTTTAAAGACAAATGGTGTAGCTCGCCAGGGACTGCATTTGCGTCACTCGTCCGCGCCGCCATAACTGCATCGACAAGCCTCGCCGATCTGCGACGCCATAACTGCATCGACAAGCCTCGCCGATCTGCGACGCCATAA |
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| Protein seq | APPLHRRECASGASPPHRRASSASLPYAHPPPWSLASACEEERFAGRLSSPFAEYFKDKWCSSPGTAFASLVRAAITASTSLADLRRHNCIDKPRRSATP |
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| Function | - | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| Os12g0275400 | Os12t0275400-01 | Chr12 | 10136113 | 10139255 | - | irgsp1_rep | ||
| CDS seq | GCGCCTCCTCTGCATCGCCGCGAGTGCGCGTCAGGCGCCTCCCCGCCGCATCGCCGTGCCTCCTCCGCATCCCTCCCCTACGCGCATCCTCCACCCTGGTCCCTCGCCTCCGCCTGCGAGGAGGAACGCTTCGCCGGGCGCCTCTCCTCGCCTTTTGCAGAGTATTTTAAAGACAAATGGTGTAGCTCGCCAGGGACTGCATTTGCGTCACTCGTCCGCGCCGCCATAACTGCATCGACAAGCCTCGCCGATCTGCGACGCCATAACTGCATCGACAAGCCTCGCCGATCTGCGACGCCATAA
More
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| Protein seq | APPLHRRECASGASPPHRRASSASLPYAHPPPWSLASACEEERFAGRLSSPFAEYFKDKWCSSPGTAFASLVRAAITASTSLADLRRHNCIDKPRRSATP |
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | None | None | None |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_12g0275400 | RBH | 2.161777 | 2.361506 | 3.541226 |
| Nipponbare | IRGSP 1.0 | MSU | NA | NA | NA | NA | NA |
| Nipponbare | IRGSP 1.0 | RAP-db | NA | NA | NA | NA | NA |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_12g0009360 | RBH | 0.000000 | 0.0 | 0.457822 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| Minghui 63 | MH63RS3 | HZAU | NA | NA | NA | NA | NA |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| Zhenshan 97 | ZS97RS3 | HZAU | NA | NA | NA | NA | NA |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_07g0013340 | RBH | 0.052506 | 0.229284 | 0.085654 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_07G013130 | RBH | 0.321511 | 0.0 | 0.000000 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
