Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| Os12g0273980 | OGI:12027050 | 16/16 | Nipponbare | IRGSP 1.0 | RAP-db | Chr12:10062718-10066028 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | TCATGGAGCTCTTCTTCCATCCGTCTCTTTACATCTTCCTTCTCTTACTTGGGTTTCTGCCACTCTCATCAGAACTTGATTCTGACTTCTGTTGTTGCATTGCAGGCATTGGTACTCTCTCAGCGTCTCAGTGATACCACCAAGACCGATGGAGGTGAAGAAATTGATCCAGAATCTTGTGTTCTTCGGATGATCCATTAGAAAGATTGAATCAAAATAATCTTTCATTTTAGGATCGCTCAGTCTCTTATTGAGTTGGCGAATTCCAAGGTGATCTGATAACTCATGGAACAGTATTTTTATGAAAATTCTTGAAGACGACGTGGTATCCTCCTCTGTCAAACGGATGTAGGCCAAAACATGCCATGGAAGCGCGTCGGTGGCCAACAAATGCGCGAAAAAGTTGGCAACATTCCCCAGCTTATTTGTGTCGAGACGATCGATCATCGAATATTGTTTCGCAAAACATTTCTCGAAGTTTTTTTGGTAAACTTTGTTGATTAGGCACAATCTTTGTGCTAGTAATCCGTAATATGGAAGGTAGGTTCTCTCTTGAGAGCAACACTCGAGGAGCATAATGCATAATTCCATCTGAGAAATGAAACATGCAACAGTTAGCATGCATAGGGGAAAAACCATATCATGCAAATTTCAGCACTGAAGGACCAAAGAAATCAATCAGCTACCTGATAATTTAAATAAGTCAATTGAACCTGAAATGCCTAATGCCCACGTAGTTAGTACTAGTATTTAGTATTGTTACTTAACAATTATTACTAACAACTTGGTTCACTATTTTTTCCATTGACAAATTATCATCTGGGGTTCAGGAGCTGGCTTCCCAAATGGTTCGTGAAATCATGCATTAGTATCACCACAAAATTGTTCTGATATGTATCCACGCACTGAAATATCAATAGTGTTTTAATGACCAAGTACTAACTAACTAGTAATTCCTCTGTTTCATATTATAAGGCTTTCTAGCATTGCCCGTATTCATATATATGATAATGAATCTAGACATATATGTGTGCCTAGATTCATTAACATCTATATGAATATGGGCAATGTTAGAAAGTCTTATAACCTAAAACGGAGGTAGTAGTACAGTATCAATTTTGAGAAACTAGGCTATCAGGCACAGAGAAAGAAATCTTCAAGAGTAGAGGGGAACTGTGGACGTCCACCGGAGTGATTCGAATCCATCTCCATAGGGGGGGGGTTGAACTTGTTTATATCTTTTGTTTTAATTTCTTTTTCAAAATTTTCACTGAGTTTTGAGAGAATCTAATAGTAATCTATATCTATATAATATATATAGTTGATCCCCACTAAGTATAGTTATTAGTATTTTTCTCACTTGTGGTGCTTCTACATCACCTTAATTCTTTTTAGCCATTAGATTGAAATCCAACATTCCAGATTATCTCAAAGCCATTTCACTATTCACCATTGGATTATCTTGGACAGCTCAGATTTACTTTTGAGTGTGATACGTTTTGTAGCTTGCATTTAGTTATTCCTTCCATCATGCACTCAATGCATTCGATGCCACAATTTTGCTAGCCGGGCGTTTCATCAACATGCATGCATGAAGTAGGATTGAACAACCCTCCTTAATGCCATCCACAAATCAACTAAGGCGATTGAAGAGCCTGGCCTCCTTAATGACAACGATTGAGCTTTAGTTGACAAAGTACATATCCGTTCTATTGTTATGAGTACCACCGTCCCATCATTACTCACCGACCCTTGGAGTTTGATATCTTCTTTTGCCTTACCATCGGTTGAAATATATAGACACACACATCTAGGAACATGTTTCTTAGAAAAGAAAATATATACATCTTCATAATTTAGTACTACTAGACAACAGAGTTTATAAAGTTTTTAACTATAATTTCAGACTTCTCTTTGGAGTATATTTTTATTTGATTATAATATATTACTGTACACAAAATCCCACGACAACGCGCGGGGTTCTATCTAGTTTAGTAGACAAATCTAGCTCAAGGCCTAGCTACCCTAAGCTTCTCTTTGTGCTAGGCCTTGAGCTAGACTTTAATTATTAGAATTGTCTTTGTTAATTGGCTCAAGGCTATTGTTTTTCTAATAAGGAAATTAACAAAATCTATTATATTATTAAAGGAATAGAAAAAGGAGTCTCCACGTTCGCTCTCATGGCTTAGAAATTCTCACATTAATCGAAGAAAAAGAAAAATCATAGTCCATATTGAAATACAATTTAGAAATAGCTGAAATTCGGAATTAAAAAATAAGAAATATTAAAAGAGGAGACTAGAGTCCATATAGAAATACAATTTAGAAATAGTTGAAATTCGGAATTAAAAAATAAGGAATATTAGAAGAGGACACTAGAGTCCATATAGAAATACAATTAGGAAATAACTGAAATTCAGAATTAAAAATAAGGAATATTAGAAGTAGAGTATAGAGTCCATATAGGAATTTAAAACTAACTAAACTTCGGAATAAACATAACAAAATTAAAAGTAGAGTTTTGAGTCCATATAAAAATACAATTTACAAATAACTAAAATTCAAAATTAAGAAAAACATGGGAAGAAGAGTTTAAAGTCAATATAGGAATACAATTTAGAAGTAACTGAAATTCAAAATTAAAAATTAAAGAATATTGAGAGATGAGTTTAGAGTCCACGTAGAAATATAATTAGAAATAATAAAAAATCAGAAATAAAAATAAATAATATTAGAAGAAGAGCCTAGAGTCTATATAGAAATACAATTTATAGAAAATTCAGAATTAAAAAAAAAAGACAAGTCTAGAGTACATATAGGAATATATATAATTTACAAATAACTAAAATTTGATATTAAAAATAATTAATAACTAACACGTATATAAAATACAATATGAATATTACGTATTTGTAGTTTCGTAAAGTTATTGCAAAATTTAAAATTTTGATGTCATTATAAAAAATTTGAATAATATATTGAGAAAACATATATACTATTATATGAGAGAAAATATAATGATGTTTGCCGCGCAATCTGCTAGTTACCATAATAAAAACTGAAAGACAATTCTAATAATTAAAGAAGAAACGAGTGAACCAAAGTGCAGTTGCTACCTCTTGGGCAGGCTCGAGCTTGATTTCAGCAAGCTTGTGGCCAGCTTGATCGTCAGGTATATCATCCTCCTTATCTCCACCGTATGCTGCCCGGGGATCATCTCCGGCTGCGGCGGCGGCGGCGGCGTTTTCTTCCTCTCCTCCAGCCTCACGTACCCAACGCACGCTCCTCGCATTCCTCCCGATCGATCCGGG
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| CDS seq | CCCGGATCGATCGGGAGGAATGCGAGGAGCGTGCGTTGGGTACGTGAGGCTGGAGGAGAGGAAGAAAACGCCGCCGCCGCCGCCGCAGCCGGAGATGATCCCCGGGCAGCATACGGTGGAGATAAGGAGGATGATATACCTGACGATCAAGCTGGCCACAAGCTTGCTGAAATCAAGCTCGAGCCTGCCCAAGAGATGGAATTATGCATTATGCTCCTCGAGTGTTGCTCTCAAGAGAGAACCTACCTTCCATATTACGGATTACTAGCACAAAGATTGTGCCTAATCAACAAAGTTTACCAAAAAAACTTCGAGAAATGTTTTGCGAAACAATATTCGATGATCGATCGTCTCGACACAAATAAGCTGGGGAATGTTGCCAACTTTTTCGCGCATTTGTTGGCCACCGACGCGCTTCCATGGCATGTTTTGGCCTACATCCGTTTGACAGAGGAGGATACCACGTCGTCTTCAAGAATTTTCATAAAAATACTGTTCCATGAGTTATCAGATCACCTTGGAATTCGCCAACTCAATAAGAGACTGAGCGATCCTAAAATGAAAGATTATTTTGATTCAATCTTTCTAATGGATCATCCGAAGAACACAAGATTCTGGATCAATTTCTTCACCTCCATCGGTCTTGGTGGTATCACTGAGACGCTGAGAGAGTACCAATGCCTGCAATGCAACAACAGAAGTCAGAATCAAGTTCTGATGAGAGTGGCAGAAACCCAAGTAAGAGAAGGAAGATGTAAAGAGACGGATGGAAGAAGAGCTCCATGA
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| Protein seq | PGSIGRNARSVRWVREAGGEEENAAAAAAAGDDPRAAYGGDKEDDIPDDQAGHKLAEIKLEPAQEMELCIMLLECCSQERTYLPYYGLLAQRLCLINKVYQKNFEKCFAKQYSMIDRLDTNKLGNVANFFAHLLATDALPWHVLAYIRLTEEDTTSSSRIFIKILFHELSDHLGIRQLNKRLSDPKMKDYFDSIFLMDHPKNTRFWINFFTSIGLGGITETLREYQCLQCNNRSQNQVLMRVAETQVREGRCKETDGRRAP |
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| Function | Pre-mRNA-splicing factor CWC22 homolog [UniProtKB/Swiss-Prot:A0A1I8M2I8] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| Os12g0273980 | Os12t0273980-00 | Chr12 | 10062718 | 10066028 | - | irgsp1_rep | ||
| CDS seq | CCCGGATCGATCGGGAGGAATGCGAGGAGCGTGCGTTGGGTACGTGAGGCTGGAGGAGAGGAAGAAAACGCCGCCGCCGCCGCCGCAGCCGGAGATGATCCCCGGGCAGCATACGGTGGAGATAAGGAGGATGATATACCTGACGATCAAGCTGGCCACAAGCTTGCTGAAATCAAGCTCGAGCCTGCCCAAGAGATGGAATTATGCATTATGCTCCTCGAGTGTTGCTCTCAAGAGAGAACCTACCTTCCATATTACGGATTACTAGCACAAAGATTGTGCCTAATCAACAAAGTTTACCAAAAAAACTTCGAGAAATGTTTTGCGAAACAATATTCGATGATCGATCGTCTCGACACAAATAAGCTGGGGAATGTTGCCAACTTTTTCGCGCATTTGTTGGCCACCGACGCGCTTCCATGGCATGTTTTGGCCTACATCCGTTTGACAGAGGAGGATACCACGTCGTCTTCAAGAATTTTCATAAAAATACTGTTCCATGAGTTATCAGATCACCTTGGAATTCGCCAACTCAATAAGAGACTGAGCGATCCTAAAATGAAAGATTATTTTGATTCAATCTTTCTAATGGATCATCCGAAGAACACAAGATTCTGGATCAATTTCTTCACCTCCATCGGTCTTGGTGGTATCACTGAGACGCTGAGAGAGTACCAATGCCTGCAATGCAACAACAGAAGTCAGAATCAAGTTCTGATGAGAGTGGCAGAAACCCAAGTAAGAGAAGGAAGATGTAAAGAGACGGATGGAAGAAGAGCTCCATGA
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| Protein seq | PGSIGRNARSVRWVREAGGEEENAAAAAAAGDDPRAAYGGDKEDDIPDDQAGHKLAEIKLEPAQEMELCIMLLECCSQERTYLPYYGLLAQRLCLINKVYQKNFEKCFAKQYSMIDRLDTNKLGNVANFFAHLLATDALPWHVLAYIRLTEEDTTSSSRIFIKILFHELSDHLGIRQLNKRLSDPKMKDYFDSIFLMDHPKNTRFWINFFTSIGLGGITETLREYQCLQCNNRSQNQVLMRVAETQVREGRCKETDGRRAP
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | None | None | None |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_12g0273980 | RBH | 0.0 | 0.0 | 0.0 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os12g17550 | RBH | 0.132441 | 0.0 | 0.045962 |
| Nipponbare | IRGSP 1.0 | RAP-db | NA | NA | NA | NA | NA |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_12g0009080 | SBH | 0.040042 | 0.0 | 0.342352 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_12g0009260 | SBH | 0.069266 | 0.0 | 0.437422 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_12g0009210 | SBH | 0.251580 | 0.0 | 0.790382 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_12g0009030 | SBH | 0.007369 | 0.0 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_12g0008850 | SBH | 0.922321 | 2.021536 | 0.664174 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_12G0122500 | SBH | 5.8987355 | 18.5424155 | 9.895173 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_12g0008130 | SBH | 0.790692 | 1.102422 | 1.469785 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_12G0153300 | SBH | 1.0024965 | 0.391179 | 0.7735615 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_12g0008060 | SBH | 0.126845 | 0.082691 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_12g0009070 | SBH | 0.356456 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_12g0008230 | SBH | 6.620002 | 19.953188 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_12g0008220 | SBH | 1.525041 | 0.0 | 1.755797 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_12g0009140 | SBH | 0.0 | 0.0 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_12G008860 | SBH | 0.160395 | 0.522424 | 0.156319 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_12g0008090 | SBH | 4.489911 | 26.803516 | 8.149611 |
