Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsNaBo_12g0008090 | OGI:12022810 | 16/16 | NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | Chr12:7837800-7842408 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | CTTTGGACTCTCGTCGGAAACCCTCGACCAATCTCACAACCCAACCCCTCTCCATGGCTGCCTCCGTCTCGCCCGCCGCATCCccctccccgccgccaccgccaccgccacgacgactcccctccccgccgccgccgccgccacgacgacgactccccgcgccaccgcgacgaccgcaagcgccgcgcctccccgtccccgtccccctccccctccgaccgcgacgccgaccgccaccgcggcaaatctagggcttccccgcccgattccaaccccgccgagagcaacggaggaggagcgccgaagcctggcagggacaacggcggcgaccgctctccccgccgcgctagggtgcccgatgcggacgcggaggagggcggccgccgccggaggaggcgctccgccgactccgacgacgagagaggcgaccgcgaccgccaccggaggcgccaccgccgccggagccccagctcggagtcctctgatggtggccgtagccgtcgccaccgccgtgacgagagctccaggcggcagagagacgagaggcgccgggacaggggcggtcgcgaggagcgacgcaggagccccgacaggaaggagccgactccgccgctgcccccgccaccgccgcttttgccggagatgatacccgggcgcacaggagggatctacatcccgcctttccgcatggcgcagatgatgagggaggtagaggacaagtcgagccccgagtaccagcgtctcagctgggatgctctcaagaagagtatcaatggtctggtgaacaaggtgaacgccaccaacattaagaatatagtgcccgagctgttcgccgagaacctggttcgtggaaggggcctcttctgccaatcgtgcatcaagtcgcagatggcttcgcctggcttcacagatgtgtttgctgcacttgtcgcggttgtaaataccaagtttcctgagataggccgcctgcttcttgttcgtgttgtgcttcagctcaagagggcatataagcgaaatgacaaggtatctttcctcaactctccttttcagcttgacatgtaatgtaatatactgctactggctcaaacataactagtatggaagaccttggttaattctatgccatgttggagtgatgttaggcctgaattccggtcaaggtttctagcattgttttaaaatgaacacttcataagattatctattgcttaattttatgtttttgcatatgtaatgttttaaacaacagctcttggttgttgcagccacaattgcttgcagcaaccaaattcatagcacacttggttaaccaggttgttgctcatgagctcgtggcgctggagcttcttactgtgctgcttgagaacccaactgatgatagtgttgaggtgcactcttgtttttgagtacctttgtattaatcagaacttcattttgtgcaatatctgaagtatggatatatttcttgtctgacaggtagcagtggggtttgttaaagagtgtggggcaatgctacaggacttgtctccacaagggcttcatggtaggttctctatatcacctgttattacaagtgcttattttgactgcatgacttgttgaacctgttggctagcacaacagtgtttcacgatattttttggacttaggcatggtattcatttcatctgtgtgatattggacatgtgaactgtacagtaccaaacagtgagtttaattgctgttaaccttaaaaatgtacaaggaataggttaggtgaagtgatgctacctaacactgtccaatccaggtttacctgcgacaattgtgtaatttgaacacttgtgctgttgctaaatgtagttttatttgtcccaaaaattaactaaagcaaaccattgctcaatttttttcatcttcttccattattgttttcaatggatttgccttctcaatctttgcagctattttcgaaagatttcgaggtattcttcatgaaggtgaaatagacaagcgtgtgcaatttttaattgaaggactgtttgcaattagaaaggctaaatttcaggtatgctcatatttttactaatattttcaggtattcttcgtgaatgcttgtaacaaattctgacctgtatcttatatgtgaagggattccctgctatccgtccagagttggatcttgtggagcaggaagaccaatttactcatgagatatcccttgaagatgagctagacccagagactaatctaagtgagcttctatttcttctgtgaacatattcactttgctacatttatgagataaaagcttgtgagttttgtttggaatatgaggcttttattggagtttcagacaccagttcaattcccataggaatctcgaaactttcctgcatttcatgtgtcttaagacttctgtgtggtattgcacttaccttttccaacctgcagatgttttcagggcaaatcctaattttgctgaagatgagaaggcgtatgagaacctaaaaagaagcatcctgggagcagaatcttctgatgatgaagaagggtctgatgatgcttctgatgaggacgctgaagaagaatctgacgatgaagaggatgaagagcagatggagattagggatcaaactgagactaatctcattaaccttcgaagaaccatatatttgacaattatgtcgagtgttgattttgaagaagctggtcacaagcttctaaaaattaaactcgagcctggccaagaggtaagtattgtaggttgacttatttctttatattagaacttggaacaaattgttgtggcaatgcatgaactttattgtctcaacaatggttttatttgccatgtgtagttattatgctaattgtctttctagaaaattgtgtcaaattcttagcattagtacaatgcagcaatttgtagttaatgcctccatttacatatggtttataagtaccatttgcttcatttggctcctttcttgtaatttaggttatttacatggtgggggttcttaaggaacaataaggattcaattgtacatgtaactttcaggtccagttgataagcttattcaaatcatctggtagtttacacttattgcattgatcagacctaactactaaataataacatatgctaggatgaaaaatcgatggtcaaaaagcttccagatggtttgttttttcacaatacagtacttgatgtcaaacaattcctcttcaatttgcataatcagattgattcttttagttcttcagtgctgaatttgccagatatattattttcccctaagccaactgtctgtttcattgacagatggaattgtgcatcatgcttctcgagtgttgcagtcaggagagaacttatcttcgatattatggattattgggccaacgattttgcatgattaacaaagtttaccaggaaaactttgagaagtgttttgtgcagcagtattccatgatacatcgtcttgaaacaaataagctaaggaatgttgctaaattttttgcacatttgttgggtactgatgcgcttccttggcacgttttggcctacatcagattgactgaggaggacacaacgtcttcatctcgaattttcataaaaatactcttccaggtatgttgttaatgttcttttatttactatgtcaactcatcttttatcaaagtagacaattgaagtatatgtttattgttatgcaggagttgtctgaacatcttggtattcgtctactcaacgagaaactgaatgatcccaacatgcaagattcatttgattcaatattcccaaaggatcatccaaagaatacaaggttctccataaattttttcacctccattggtcttgggggtatcacagagaccctgagagagtacttgaagaatatgcctcgactgataatgcaacaacagaaacccgcctcttctgagtcaggatcaagtgattcaggatctgcttcagacagctctagctcagagtcggaatcgagctctgatgagagtgacaagaagagaagcaagaggcggaagaggtaagagaatgaagaaaattagttgcactgttgcttctgggatgcaactgttgttagatcagcattgtcagatttggctgttctgttggatcctcctgtatttgtatccatgtgcaaaatcagatctagctgttggtgcttgttgaattgaggacccaatcataatctgaaccccaatagctgtgatggtgtaagatattaagcgagctagtattggttcctaccttcaaatcatgtgagacaagccaaagcgccaacaatccccacaggaaactggaattctaattttcctttcatatgctttaggcagtgcaagttttgtatcttgagaaattattttcttacggtctgaagttttgcaacagtactgagctaagcaggaagcgatcaacagttatgtatgtgcaagttggcgtgtttctgcccctatgtgatgagccttgctcatctgttggtatactgctgttttcgtggtgttattatgggcatcaccagcatttttgtgtatcattagtatctttgaggaagtattacagaaaaatcattggtttatcatggtggcagcgttgaagttttacggc
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| CDS seq | atgatacccgggcgcacaggagggatctacatcccgcctttccgcatggcgcagatgatgagggaggtagaggacaagtcgagccccgagtaccagcgtctcagctgggatgctctcaagaagagtatcaatggtctggtgaacaaggtgaacgccaccaacattaagaatatagtgcccgagctgttcgccgagaacctggttcgtggaaggggcctcttctgccaatcgtgcatcaagtcgcagatggcttcgcctggcttcacagatgtgtttgctgcacttgtcgcggttgtaaataccaagtttcctgagataggccgcctgcttcttgttcgtgttgtgcttcagctcaagagggcatataagcgaaatgacaagccacaattgcttgcagcaaccaaattcatagcacacttggttaaccaggttgttgctcatgagctcgtggcgctggagcttcttactgtgctgcttgagaacccaactgatgatagtgttgaggtagcagtggggtttgttaaagagtgtggggcaatgctacaggacttgtctccacaagggcttcatgctattttcgaaagatttcgaggtattcttcatgaaggtgaaatagacaagcgtgtgcaatttttaattgaaggactgtttgcaattagaaaggctaaatttcagggattccctgctatccgtccagagttggatcttgtggagcaggaagaccaatttactcatgagatatcccttgaagatgagctagacccagagactaatctaaatgttttcagggcaaatcctaattttgctgaagatgagaaggcgtatgagaacctaaaaagaagcatcctgggagcagaatcttctgatgatgaagaagggtctgatgatgcttctgatgaggacgctgaagaagaatctgacgatgaagaggatgaagagcagatggagattagggatcaaactgagactaatctcattaaccttcgaagaaccatatatttgacaattatgtcgagtgttgattttgaagaagctggtcacaagcttctaaaaattaaactcgagcctggccaagagatggaattgtgcatcatgcttctcgagtgttgcagtcaggagagaacttatcttcgatattatggattattgggccaacgattttgcatgattaacaaagtttaccaggaaaactttgagaagtgttttgtgcagcagtattccatgatacatcgtcttgaaacaaataagctaaggaatgttgctaaattttttgcacatttgttgggtactgatgcgcttccttggcacgttttggcctacatcagattgactgaggaggacacaacgtcttcatctcgaattttcataaaaatactcttccaggagttgtctgaacatcttggtattcgtctactcaacgagaaactgaatgatcccaacatgcaagattcatttgattcaatattcccaaaggatcatccaaagaatacaaggttctccataaattttttcacctccattggtcttgggggtatcacagagaccctgagagagtacttgaagaatatgcctcgactgataatgcaacaacagaaacccgcctcttctgagtcaggatcaagtgattcaggatctgcttcagacagctctagctcagagtcggaatcgagctctgatgagagtgacaagaagagaagcaagaggcggaagaggtaa
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| Protein seq | MIPGRTGGIYIPPFRMAQMMREVEDKSSPEYQRLSWDALKKSINGLVNKVNATNIKNIVPELFAENLVRGRGLFCQSCIKSQMASPGFTDVFAALVAVVNTKFPEIGRLLLVRVVLQLKRAYKRNDKPQLLAATKFIAHLVNQVVAHELVALELLTVLLENPTDDSVEVAVGFVKECGAMLQDLSPQGLHAIFERFRGILHEGEIDKRVQFLIEGLFAIRKAKFQGFPAIRPELDLVEQEDQFTHEISLEDELDPETNLNVFRANPNFAEDEKAYENLKRSILGAESSDDEEGSDDASDEDAEEESDDEEDEEQMEIRDQTETNLINLRRTIYLTIMSSVDFEEAGHKLLKIKLEPGQEMELCIMLLECCSQERTYLRYYGLLGQRFCMINKVYQENFEKCFVQQYSMIHRLETNKLRNVAKFFAHLLGTDALPWHVLAYIRLTEEDTTSSSRIFIKILFQELSEHLGIRLLNEKLNDPNMQDSFDSIFPKDHPKNTRFSINFFTSIGLGGITETLREYLKNMPRLIMQQQKPASSESGSSDSGSASDSSSSESESSSDESDKKRSKRRKR |
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| Function | Pre-mRNA-splicing factor CWC22 homolog [UniProtKB/Swiss-Prot:Q9VJ87] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsNaBo_12g0008090 | OsNaBo_12g0008090.02 | Chr12 | 7837875 | 7842225 | + | NAM | ||
| CDS seq | atgatacccgggcgcacaggagggatctacatcccgcctttccgcatggcgcagatgatgagggaggtagaggacaagtcgagccccgagtaccagcgtctcagctgggatgctctcaagaagagtatcaatggtctggtgaacaaggtgaacgccaccaacattaagaatatagtgcccgagctgttcgccgagaacctggttcgtggaaggggcctcttctgccaatcgtgcatcaagtcgcagatggcttcgcctggcttcacagatgtgtttgctgcacttgtcgcggttgtaaataccaagtttcctgagataggccgcctgcttcttgttcgtgttgtgcttcagctcaagagggcatataagcgaaatgacaagccacaattgcttgcagcaaccaaattcatagcacacttggttaaccaggttgttgctcatgagctcgtggcgctggagcttcttactgtgctgcttgagaacccaactgatgatagtgttgaggtagcagtggggtttgttaaagagtgtggggcaatgctacaggacttgtctccacaagggcttcatgctattttcgaaagatttcgaggtattcttcatgaaggtgaaatagacaagcgtgtgcaatttttaattgaaggactgtttgcaattagaaaggctaaatttcagggattccctgctatccgtccagagttggatcttgtggagcaggaagaccaatttactcatgagatatcccttgaagatgagctagacccagagactaatctaaatgttttcagggcaaatcctaattttgctgaagatgagaaggcgtatgagaacctaaaaagaagcatcctgggagcagaatcttctgatgatgaagaagggtctgatgatgcttctgatgaggacgctgaagaagaatctgacgatgaagaggatgaagagcagatggagattagggatcaaactgagactaatctcattaaccttcgaagaaccatatatttgacaattatgtcgagtgttgattttgaagaagctggtcacaagcttctaaaaattaaactcgagcctggccaagagatggaattgtgcatcatgcttctcgagtgttgcagtcaggagagaacttatcttcgatattatggattattgggccaacgattttgcatgattaacaaagtttaccaggaaaactttgagaagtgttttgtgcagcagtattccatgatacatcgtcttgaaacaaataagctaaggaatgttgctaaattttttgcacatttgttgggtactgatgcgcttccttggcacgttttggcctacatcagattgactgaggaggacacaacgtcttcatctcgaattttcataaaaatactcttccaggagttgtctgaacatcttggtattcgtctactcaacgagaaactgaatgatcccaacatgcaagattcatttgattcaatattcccaaaggatcatccaaagaatacaaggttctccataaattttttcacctccattggtcttgggggtatcacagagaccctgagagagtacttgaagaatatgcctcgactgataatgcaacaacagaaacccgcctcttctgagtcaggatcaagtgattcaggatctgcttcagacagctctagctcagagtcggaatcgagctctgatgagagtgacaagaagagaagcaagaggcggaagaggtaa
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| Protein seq | MIPGRTGGIYIPPFRMAQMMREVEDKSSPEYQRLSWDALKKSINGLVNKVNATNIKNIVPELFAENLVRGRGLFCQSCIKSQMASPGFTDVFAALVAVVNTKFPEIGRLLLVRVVLQLKRAYKRNDKPQLLAATKFIAHLVNQVVAHELVALELLTVLLENPTDDSVEVAVGFVKECGAMLQDLSPQGLHAIFERFRGILHEGEIDKRVQFLIEGLFAIRKAKFQGFPAIRPELDLVEQEDQFTHEISLEDELDPETNLNVFRANPNFAEDEKAYENLKRSILGAESSDDEEGSDDASDEDAEEESDDEEDEEQMEIRDQTETNLINLRRTIYLTIMSSVDFEEAGHKLLKIKLEPGQEMELCIMLLECCSQERTYLRYYGLLGQRFCMINKVYQENFEKCFVQQYSMIHRLETNKLRNVAKFFAHLLGTDALPWHVLAYIRLTEEDTTSSSRIFIKILFQELSEHLGIRLLNEKLNDPNMQDSFDSIFPKDHPKNTRFSINFFTSIGLGGITETLREYLKNMPRLIMQQQKPASSESGSSDSGSASDSSSSESESSSDESDKKRSKRRKR
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| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsNaBo_12g0008090 | OsNaBo_12g0008090.01 | Chr12 | 7837800 | 7842408 | + | NAM | ||
| CDS seq | atgatacccgggcgcacaggagggatctacatcccgcctttccgcatggcgcagatgatgagggaggtagaggacaagtcgagccccgagtaccagcgtctcagctgggatgctctcaagaagagtatcaatggtctggtgaacaaggtgaacgccaccaacattaagaatatagtgcccgagctgttcgccgagaacctggttcgtggaaggggcctcttctgccaatcgtgcatcaagtcgcagatggcttcgcctggcttcacagatgtgtttgctgcacttgtcgcggttgtaaataccaagtttcctgagataggccgcctgcttcttgttcgtgttgtgcttcagctcaagagggcatataagcgaaatgacaagccacaattgcttgcagcaaccaaattcatagcacacttggttaaccaggttgttgctcatgagctcgtggcgctggagcttcttactgtgctgcttgagaacccaactgatgatagtgttgaggtagcagtggggtttgttaaagagtgtggggcaatgctacaggacttgtctccacaagggcttcatgctattttcgaaagatttcgaggtattcttcatgaaggtgaaatagacaagcgtgtgcaatttttaattgaaggactgtttgcaattagaaaggctaaatttcagggattccctgctatccgtccagagttggatcttgtggagcaggaagaccaatttactcatgagatatcccttgaagatgagctagacccagagactaatctaaatgttttcagggcaaatcctaattttgctgaagatgagaaggcgtatgagaacctaaaaagaagcatcctgggagcagaatcttctgatgatgaagaagggtctgatgatgcttctgatgaggacgctgaagaagaatctgacgatgaagaggatgaagagcagatggagattagggatcaaactgagactaatctcattaaccttcgaagaaccatatatttgacaattatgtcgagtgttgattttgaagaagctggtcacaagcttctaaaaattaaactcgagcctggccaagagatggaattgtgcatcatgcttctcgagtgttgcagtcaggagagaacttatcttcgatattatggattattgggccaacgattttgcatgattaacaaagtttaccaggaaaactttgagaagtgttttgtgcagcagtattccatgatacatcgtcttgaaacaaataagctaaggaatgttgctaaattttttgcacatttgttgggtactgatgcgcttccttggcacgttttggcctacatcagattgactgaggaggacacaacgtcttcatctcgaattttcataaaaatactcttccaggagttgtctgaacatcttggtattcgtctactcaacgagaaactgaatgatcccaacatgcaagattcatttgattcaatattcccaaaggatcatccaaagaatacaaggttctccataaattttttcacctccattggtcttgggggtatcacagagaccctgagagagtacttgaagaatatgcctcgactgataatgcaacaacagaaacccgcctcttctgagtcaggatcaagtgattcaggatctgcttcagacagctctagctcagagtcggaatcgagctctgatgagagtgacaagaagagaagcaagaggcggaagaggtaa
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| Protein seq | MIPGRTGGIYIPPFRMAQMMREVEDKSSPEYQRLSWDALKKSINGLVNKVNATNIKNIVPELFAENLVRGRGLFCQSCIKSQMASPGFTDVFAALVAVVNTKFPEIGRLLLVRVVLQLKRAYKRNDKPQLLAATKFIAHLVNQVVAHELVALELLTVLLENPTDDSVEVAVGFVKECGAMLQDLSPQGLHAIFERFRGILHEGEIDKRVQFLIEGLFAIRKAKFQGFPAIRPELDLVEQEDQFTHEISLEDELDPETNLNVFRANPNFAEDEKAYENLKRSILGAESSDDEEGSDDASDEDAEEESDDEEDEEQMEIRDQTETNLINLRRTIYLTIMSSVDFEEAGHKLLKIKLEPGQEMELCIMLLECCSQERTYLRYYGLLGQRFCMINKVYQENFEKCFVQQYSMIHRLETNKLRNVAKFFAHLLGTDALPWHVLAYIRLTEEDTTSSSRIFIKILFQELSEHLGIRLLNEKLNDPNMQDSFDSIFPKDHPKNTRFSINFFTSIGLGGITETLREYLKNMPRLIMQQQKPASSESGSSDSGSASDSSSSESESSSDESDKKRSKRRKR
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 4.489911 | 26.803516 | 8.149611 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_12g0256300 | RBH | 3.308500 | 3.119117 | 5.027191 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os12g15420 | RBH | 1.981904 | 1.824848 | 1.125681 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os12g0256300 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_12g0008350 | RBH | 1.197480 | 8.705660 | 6.782208 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_12g0008480 | RBH | 0.127826 | 2.034829 | 3.043723 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_12g0008510 | RBH | 2.768380 | 10.817880 | 8.288420 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_12g0008330 | RBH | 0.442346 | 0.605065 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_12g0008160 | RBH | 7.763240 | 30.092030 | 17.645350 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_12G0122500 | RBH | 5.8987355 | 18.5424155 | 9.895173 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_12g0008130 | RBH | 0.790692 | 1.102422 | 1.469785 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_12G0128300 | RBH | 6.8428245 | 18.9359465 | 12.303542 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_12g0008060 | RBH | 0.126845 | 0.082691 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_12g0008370 | RBH | 0.858024 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_12g0008230 | RBH | 6.620002 | 19.953188 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_12g0008220 | RBH | 1.525041 | 0.0 | 1.755797 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_12g0008350 | RBH | 0.736764 | 12.408726 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_12G008220 | RBH | 1.116405 | 6.513494 | 4.183605 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
