Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| Os12g0269200 | OGI:12025840 | 16/16 | Nipponbare | IRGSP 1.0 | RAP-db | Chr12:9688988-9689683 | ||||||||
| Gene Symbol | Prol-25, Prol-28, Prol-29, Prol-30, pro13a.4, PROLM28, pro13a.5, Prol-26, pro13a.6 | ||||||||||
| DNA seq | ATTCTTCTCACAACTCAAACATTACAGCAAAAGCATAAGAACTAGAAACCCACCACAATGAAGATCATTTTCTTCTTTGCTCTCCTTGCTATTGCTGCATGCAGTGCCTCTGCGCAGTTTGATGCTGTTACTCAAGTTTACAGGCAATATCAGCTGCAGCCGCATCTCATGCTGCAGCAACAGATGCTTAGCCCATGCGGTGAGTTCGTAAGGCAGCAGTGCAGCACAGTGGCAACCCCCTTCTTCCAATCACCCGTGTTTCAACTGAGAAACTGCCAAGTCATGCAGCAGCAGTGCTGCCAACAGCTCAGGATGATCGCACAACAGTCTCACTGCCAGGCCATTAGCAGTGTTCAGGCTATTGTGCAGCAGCTACGGCTACAACAGTTTGCTAGCGTCTACTTCGATCAGAGTCAAGCTCAAGCCCAAGCTATGTTGGCCCTAAACATGCCGTCAATATGCGGTATCTACCCAAGCTACAACACTGCTCCCTGTAGCATTCCCACCGTCGGTGGTATCTGGTATTGAATTGTAGCAGTATAGTAGTACAGGAGAGAAAAATAAAGTCATGCATCATCGTGTGTGACAAGTTGAAACATCGGGGTGATACAAATCTGAATAAAAATGTCATGCAAGTTTAAACATAATGCCTCTGTAAGGATAAATCCTAGTACATTGTTGAAATTAATTATCGTC
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| CDS seq | ATGAAGATCATTTTCTTCTTTGCTCTCCTTGCTATTGCTGCATGCAGTGCCTCTGCGCAGTTTGATGCTGTTACTCAAGTTTACAGGCAATATCAGCTGCAGCCGCATCTCATGCTGCAGCAACAGATGCTTAGCCCATGCGGTGAGTTCGTAAGGCAGCAGTGCAGCACAGTGGCAACCCCCTTCTTCCAATCACCCGTGTTTCAACTGAGAAACTGCCAAGTCATGCAGCAGCAGTGCTGCCAACAGCTCAGGATGATCGCACAACAGTCTCACTGCCAGGCCATTAGCAGTGTTCAGGCTATTGTGCAGCAGCTACGGCTACAACAGTTTGCTAGCGTCTACTTCGATCAGAGTCAAGCTCAAGCCCAAGCTATGTTGGCCCTAAACATGCCGTCAATATGCGGTATCTACCCAAGCTACAACACTGCTCCCTGTAGCATTCCCACCGTCGGTGGTATCTGGTATTGA
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| Protein seq | MKIIFFFALLAIAACSASAQFDAVTQVYRQYQLQPHLMLQQQMLSPCGEFVRQQCSTVATPFFQSPVFQLRNCQVMQQQCCQQLRMIAQQSHCQAISSVQAIVQQLRLQQFASVYFDQSQAQAQAMLALNMPSICGIYPSYNTAPCSIPTVGGIWY |
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| Function | Prolamin PPROL 17D [UniProtKB/Swiss-Prot:P20698] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| Os12g0269200 | Os12t0269200-01 | Chr12 | 9688988 | 9689683 | + | irgsp1_rep | ||
| CDS seq | ATGAAGATCATTTTCTTCTTTGCTCTCCTTGCTATTGCTGCATGCAGTGCCTCTGCGCAGTTTGATGCTGTTACTCAAGTTTACAGGCAATATCAGCTGCAGCCGCATCTCATGCTGCAGCAACAGATGCTTAGCCCATGCGGTGAGTTCGTAAGGCAGCAGTGCAGCACAGTGGCAACCCCCTTCTTCCAATCACCCGTGTTTCAACTGAGAAACTGCCAAGTCATGCAGCAGCAGTGCTGCCAACAGCTCAGGATGATCGCACAACAGTCTCACTGCCAGGCCATTAGCAGTGTTCAGGCTATTGTGCAGCAGCTACGGCTACAACAGTTTGCTAGCGTCTACTTCGATCAGAGTCAAGCTCAAGCCCAAGCTATGTTGGCCCTAAACATGCCGTCAATATGCGGTATCTACCCAAGCTACAACACTGCTCCCTGTAGCATTCCCACCGTCGGTGGTATCTGGTATTGA
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| Protein seq | MKIIFFFALLAIAACSASAQFDAVTQVYRQYQLQPHLMLQQQMLSPCGEFVRQQCSTVATPFFQSPVFQLRNCQVMQQQCCQQLRMIAQQSHCQAISSVQAIVQQLRLQQFASVYFDQSQAQAQAMLALNMPSICGIYPSYNTAPCSIPTVGGIWY |
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | None | None | None |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_12g0269200 | RBH | 0.0 | 0.0 | 19.947620 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os12g16890 | RBH | 0.0 | 0.0 | 4.895746 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os12g0269700 | SBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_12g0008880 | SBH | 0.0 | 0.0 | 0.0 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_12g0009010 | SBH | 0.0 | 0.0 | 0.0 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_12g0009010 | SBH | 0.0 | 0.0 | 0.0 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_12g0008840 | SBH | 0.0 | 0.0 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_12g0008670 | RBH | 0.0 | 0.0 | 0.0 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_12G0132200 | RBH | 0 | 0 | 0 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_12g0008700 | SBH | 0.0 | 0.0 | 0.0 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_12G0148000 | RBH | 0.0471185 | 0.0981915 | 0 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_12g0008620 | SBH | 0.0 | 0.0 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_12g0008890 | SBH | 0.0 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_12g0008820 | SBH | 0.0 | 0.0 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_12g0008800 | RBH | 0.0 | 0.0 | 0.0 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_12g0008920 | SBH | 0.0 | 0.0 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_12G008690 | SBH | 0.0 | 0.0 | 0.0 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_12g0008630 | SBH | 0.0 | 0.0 | 0.0 |
