Basic Info |
Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
OsN22_12G008690 | OGI:12025840 | 16/16 | N22 | OsN22RS2 | Gramene(+IsoSeq) | Chr12:9311807-9312558 | ||||||||
Gene Symbol | Prol-25, Prol-28, Prol-29, Prol-30, pro13a.4, PROLM28, pro13a.5 | ||||||||||
DNA seq | ATCCTTCTCACAAATCAAACATTACAGCAAAAGCATAAGAACTAGAAACCCACCACAATGAAGATAATTTTCTTGTTAGCTCTCCTTGCTATTGCTGCATGCAGCGCCTCTGCGCAGTTTGATGCTGTCACTCAAGTTTACAGGCAATATCAGCTGCAGCCGCATCTCTTGCTGCAGCAACAGATGCTTAGCCCATGCGGTGAGTTCGTAAGGCAGCAGTGCAGCACAGTGGCAACCCCCTTCTTCCAATCACCCGTGCTTCAACTGAAAAACTGCCAAGTCATGCGGCAGCAGTGCTGCCAACAGCTCAGGATGATCGCGCAACAGTCTCACTGCCAGGCCATTAGCATTGTTCAGGCGATTGTGCAGCAGCTACAGCTACAACAGTTTGCTGGCGTCTACTTCGATCAGACTCAAGCTCAAGCCCAAGCTATGTTGGCCCTAAACTTGCCGTCAATATGCGGTATCTACCCAAGCTACAACACTGCTCCCTGTAGCATTCCCACCGTCGGTGGAATCTGGTACTGAATTGTAGCAGTATAGTAGTACAGGAGAGAAAAATAACGTCATGCATCATCGTGTGTGACAAGTTGAAACATCGGGGTGATACAAATCTGAATAAAAATGTCATGCAAGTTTAAACATAATGCCTCTGTAAGGATAAATCCTAGTACATTGTTGAAATTAATTATCATCACCGTCTACTATGGTTGCATTTACAACTTTACGATGTGTGCCTACATTCAGTTCTA
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CDS seq | ATGAAGATAATTTTCTTGTTAGCTCTCCTTGCTATTGCTGCATGCAGCGCCTCTGCGCAGTTTGATGCTGTCACTCAAGTTTACAGGCAATATCAGCTGCAGCCGCATCTCTTGCTGCAGCAACAGATGCTTAGCCCATGCGGTGAGTTCGTAAGGCAGCAGTGCAGCACAGTGGCAACCCCCTTCTTCCAATCACCCGTGCTTCAACTGAAAAACTGCCAAGTCATGCGGCAGCAGTGCTGCCAACAGCTCAGGATGATCGCGCAACAGTCTCACTGCCAGGCCATTAGCATTGTTCAGGCGATTGTGCAGCAGCTACAGCTACAACAGTTTGCTGGCGTCTACTTCGATCAGACTCAAGCTCAAGCCCAAGCTATGTTGGCCCTAAACTTGCCGTCAATATGCGGTATCTACCCAAGCTACAACACTGCTCCCTGTAGCATTCCCACCGTCGGTGGAATCTGGTACTGA
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Protein seq | MKIIFLLALLAIAACSASAQFDAVTQVYRQYQLQPHLLLQQQMLSPCGEFVRQQCSTVATPFFQSPVLQLKNCQVMRQQCCQQLRMIAQQSHCQAISIVQAIVQQLQLQQFAGVYFDQTQAQAQAMLALNLPSICGIYPSYNTAPCSIPTVGGIWY |
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Function | Prolamin PPROL 17D [UniProtKB/Swiss-Prot:P20698] |
Transcripts
Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
OsN22_12G008690 | OsN22_12G008690_01 | Chr12 | 9311807 | 9312558 | + | NAM | ||
CDS seq | ATGAAGATAATTTTCTTGTTAGCTCTCCTTGCTATTGCTGCATGCAGCGCCTCTGCGCAGTTTGATGCTGTCACTCAAGTTTACAGGCAATATCAGCTGCAGCCGCATCTCTTGCTGCAGCAACAGATGCTTAGCCCATGCGGTGAGTTCGTAAGGCAGCAGTGCAGCACAGTGGCAACCCCCTTCTTCCAATCACCCGTGCTTCAACTGAAAAACTGCCAAGTCATGCGGCAGCAGTGCTGCCAACAGCTCAGGATGATCGCGCAACAGTCTCACTGCCAGGCCATTAGCATTGTTCAGGCGATTGTGCAGCAGCTACAGCTACAACAGTTTGCTGGCGTCTACTTCGATCAGACTCAAGCTCAAGCCCAAGCTATGTTGGCCCTAAACTTGCCGTCAATATGCGGTATCTACCCAAGCTACAACACTGCTCCCTGTAGCATTCCCACCGTCGGTGGAATCTGGTACTGA
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Protein seq | MKIIFLLALLAIAACSASAQFDAVTQVYRQYQLQPHLLLQQQMLSPCGEFVRQQCSTVATPFFQSPVLQLKNCQVMRQQCCQQLRMIAQQSHCQAISIVQAIVQQLQLQQFAGVYFDQTQAQAQAMLALNLPSICGIYPSYNTAPCSIPTVGGIWY |
Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
Leaf | Root | Panicle | |
FPKM | 0.0 | 0.0 | 0.0 |
Homologues
Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
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Leaf | Root | Panicle | |||
Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_12g0269700 | RBH | 0.0 | 0.0 | 1.852968 |
Nipponbare | IRGSP 1.0 | MSU | LOC_Os12g16890 | RBH | 0.0 | 0.0 | 4.895746 |
Nipponbare | IRGSP 1.0 | RAP-db | Os12g0269700 | RBH | None | None | None |
Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_12g0008880 | RBH | 0.0 | 0.0 | 0.0 |
KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_12g0009010 | SBH | 0.0 | 0.0 | 0.0 |
CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_12g0009010 | RBH | 0.0 | 0.0 | 0.0 |
ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_12g0008840 | RBH | 0.0 | 0.0 | None |
PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_12g0008670 | RBH | 0.0 | 0.0 | 0.0 |
Minghui 63 | MH63RS3 | HZAU | OsMH63_12G0132200 | RBH | 0 | 0 | 0 |
IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_12g0008700 | SBH | 0.0 | 0.0 | 0.0 |
Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_12G0148000 | SBH | 0.0471185 | 0.0981915 | 0 |
LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_12g0008630 | RBH | 0.0 | 0.0 | None |
KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_12g0008890 | SBH | 0.0 | 0.0 | None |
GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_12g0008810 | RBH | 0.0 | 0.0 | None |
LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_12g0008770 | RBH | 0.0 | 0.0 | 0.0 |
LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_12g0008920 | SBH | 0.0 | 0.0 | None |
N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_12G008700 | RBH | 0.0 | 0.0 | 0.0 |
NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_12g0008630 | RBH | 0.0 | 0.0 | 0.0 |