Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| Os11g0448200 | OGI:11043010 | 5/16 | Nipponbare | IRGSP 1.0 | RAP-db | Chr11:14969237-14972247 | ||||||||
| Gene Symbol | AM14, OsAM14, OsARK1, ARK1 | ||||||||||
| DNA seq | ATGGAGAAGGTGCTTTTATGGATGGCTTTGATTATGGTAACTTCAGTTGGTTTTTGCAAGGGTGATCAAGATTTTGTTGCAGGTTCGTCTTCAATGTCTTTATCTTGGGGGTGATCAGTTCATATTCACTTGAATACTTCTCTTTCTGCAAAAGAAAAAAAACTGTAAACATATTTTTTTTTAAAAAAAGATATGTACAAGCTTCAACGTCCGAATAGGCGGAATAGCTGCTAAATAATGCAATATTTCTACCTTAGTGTTAAAATGCAAAAGTTTCGTTGTTGCTAAAAGAAAACGAGCATGCAGTTCGTACTTACCCCCTTTTTTTTTTGACTGGAGCAAACAAATTAATTGATGAAATAATCGCGTTGAGTTTATACCCTCATTATGGTTATTTATTTTATTACATGACGTTGTAAACATTTTGACACATGTTTGATCATTCATTTTATTAAAAAACATTATCATTATTTATTTTATTGCGACTTGGTTTATCATATTATAGGTACTTTGCACAAAAGTTTTAAATAACCTAAATAGTGAAACATGTGTAAAAAGTCAATAGCTTCATCTATTAAAAACCGAAGGTATTATCATTTAAACATGATCTCTCCCTTGACAACTTTGACTATTATTTTCAAACAATGTCAAAGTGAATAGATTCGAAGGTAAGATATTACTATAGTTCTTTCGATTAGATTTAATCTAATGATAAATAATAGGTTATTTAAAAATTATTGTTGGTCAAAGTTGTACAATTCAGAGTCAAAACCGACAAGTATTTCTTAATGAGTAACTATACGAGCATAACGGTAGTAGAATTAACACCAATGGTATATAACATGTCAAATGGATACACCAACTAATCATATTTCTTGACAATCGCAGAAGGTGGATACATCAAGATAAAACGTAAGTCCAAGATCATCAGTTCTTTTCCGAACACAGCACAGTTCATTATGCATCACCAACAAAAGTCTAAATAAATATTATTTGTGTATTTTTTTTTCAGGTAGCACATTTGCAGTAGTAATAGTTTTCACAGTCATGCTGATTGCTCTTATCATTGCACTCATGAGATACATGAGCAAAAAGAGCAAAGCTGATGAGACCATTGACTCAACAAGATCTTCTCAAGGTTGATAAACGATAACCCCCCCTACAACACATGAATTCTGACAAACTTCAGATACAAATCAACCTGCACAACATCATCTACTAACTACTAACTTTCATTATCCACCAAGACAACAAGGTTCATGGGGAGGTGATCAACAGGTGGTCAGGGCTGTACAAGTTCAGCAAGGGCGAGATCGAGAAGGCGATAAACTACGCGAACAGCAAGATCTGCCTTGGCTCCGGTAGCGCAGGCCAGGTATACCAAGGAGTGCTACCGAGTGGTCAGCTTGTTGCGATCAAGCACATCCACAAGTCGGCCATGTCCGGGTCCTTCATGAGGGAGGTGGAAGGCCTTTCCAAGGTGAGGCACCCCAATCTGGTCTGCCTCTTTGGCTACTGTGATGATGGGGGTGACCAGTACCTTGTGTATGAGTATTGTGCCAATGGAAACCTGGCTCAGAACCTTCTAAGTAAGAATAGTTATTTTGAGCTTTGAGCAGAGCTGATGACAGTTCTTTTTTTGGTTTCAAATTTAGTGGAAAAAATTTAGGTTCAGCTATGTTTGGAATGATCCTTTTGTCTTGATTGACAGGGAGTGACTCTGTGCTGTCCTGGCCAGCAAGGGTGAAGATTCTGAGGGATTGTGCATCTGTCTTGAGGTTTCTTCACACACACCCTGATGGATGCATTGTTCATAGAGACATTAAGGTGAGGACAGTACTGAATGGTTTTGTGATTCTAGCAATGTGAACCATAAATTTGATCAAACCATTACCCACTGGTGTCCTGTTCTGGTTTTGCAGCTCACTAACATCTTACTGACAGAGAGCATGGAGCCCAAGTTATCTGATTTCGGGCTGGCGAAGATGTTGCAAATGGAGGAGACTAAAGTTTTCACAGATGTGAGAGGGACCATTGGCTACATGGATCCAGAGTACATTACACATTCCAAGCTTACTTGTGCCAGTGACATCTACAGTTTTGGTGTGGTTGCACTGCAGCTCCTGTCAGGAAGGAAGGTCATTGAACTTGACACTGTTGCCAGGGATTCCCTTACAAAGAAGGTAAAAAATGATACTTCTAACCAGCATATGTTTGATGCTACGCAATCTATAACAACCTCTCTAAGTATGCAATTATGATTTCACTTAGAATTTTAGGAGTAATGCTCACTATCTGTTCTCATATTAGTGTCATTTATGTTCAAAATTCAACTGACTATATATGTTAAGACATTTTAAATTGTTTTTGGAATAATTATCTAAAAGAATGGAAATATGATTGTGCTATGAATATGCAACACCCAAAACAACAAAAAGAAGTAAAACTAAATTCTATGGAGGAAAAAAATGTAAGTAATGCAACTAAATGCAACCCTAGAAAAAAAAATCCGACAACCCAGAATTCAAAGATAAAAAATGTAAAACTCGTTGTTTTCTAAAGATAGTTATTGTAGTCATCGTCTTTCAAATGATTATGATTCAAGTGCACACACAACTTTTCCAAATGAAGGCCAGGGATGTGGTGAGCGGGAAAAAACCATTGGACGAATTCATAGACCCCCGTGTTAGAGACGAGGTTAACATTGAAGATTTCGTGTTGATATTGAAAATTGCGGTCCTCTGCGTGGCGCATTCAAGTGTAGGGCGTCCAACAATAAAGGATGTTTTTGAGGAGATGGACAAAGCATTGACGAATACAGATTCAAAGGTTAGAATTACATTGTTTCTTTTGATGAACTTTCTTAAACAGACTGTGAATATATTAATTTACTTGTCATTTTATTTAATGCTGCCTCTAATTCTGCTGATCAGGTTGGCAGAGCGAGAGAAGAGATAAACCCATCCAGTACAATCCAGTATCAGTATGCAACGGGGCTTAACATAGTATAG
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| CDS seq | ATGGAGAAGGTGCTTTTATGGATGGCTTTGATTATGGTAACTTCAGTTGGTTTTTGCAAGGGTGATCAAGATTTTGTTGCAGAAGGTGGATACATCAAGATAAAACGTAGCACATTTGCAGTAGTAATAGTTTTCACAGTCATGCTGATTGCTCTTATCATTGCACTCATGAGATACATGAGCAAAAAGAGCAAAGCTGATGAGACCATTGACTCAACAAGATCTTCTCAAGACAACAAGGTTCATGGGGAGGTGATCAACAGGTGGTCAGGGCTGTACAAGTTCAGCAAGGGCGAGATCGAGAAGGCGATAAACTACGCGAACAGCAAGATCTGCCTTGGCTCCGGTAGCGCAGGCCAGGTATACCAAGGAGTGCTACCGAGTGGTCAGCTTGTTGCGATCAAGCACATCCACAAGTCGGCCATGTCCGGGTCCTTCATGAGGGAGGTGGAAGGCCTTTCCAAGGTGAGGCACCCCAATCTGGTCTGCCTCTTTGGCTACTGTGATGATGGGGGTGACCAGTACCTTGTGTATGAGTATTGTGCCAATGGAAACCTGGCTCAGAACCTTCTAAGGAGTGACTCTGTGCTGTCCTGGCCAGCAAGGGTGAAGATTCTGAGGGATTGTGCATCTGTCTTGAGGTTTCTTCACACACACCCTGATGGATGCATTGTTCATAGAGACATTAAGCTCACTAACATCTTACTGACAGAGAGCATGGAGCCCAAGTTATCTGATTTCGGGCTGGCGAAGATGTTGCAAATGGAGGAGACTAAAGTTTTCACAGATGTGAGAGGGACCATTGGCTACATGGATCCAGAGTACATTACACATTCCAAGCTTACTTGTGCCAGTGACATCTACAGTTTTGGTGTGGTTGCACTGCAGCTCCTGTCAGGAAGGAAGGTCATTGAACTTGACACTGTTGCCAGGGATTCCCTTACAAAGAAGGCCAGGGATGTGGTGAGCGGGAAAAAACCATTGGACGAATTCATAGACCCCCGTGTTAGAGACGAGGTTAACATTGAAGATTTCGTGTTGATATTGAAAATTGCGGTCCTCTGCGTGGCGCATTCAAGTGTAGGGCGTCCAACAATAAAGGATGTTTTTGAGGAGATGGACAAAGCATTGACGAATACAGATTCAAAGGTTGGCAGAGCGAGAGAAGAGATAAACCCATCCAGTACAATCCAGTATCAGTATGCAACGGGGCTTAACATAGTATAG
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| Protein seq | MEKVLLWMALIMVTSVGFCKGDQDFVAEGGYIKIKRSTFAVVIVFTVMLIALIIALMRYMSKKSKADETIDSTRSSQDNKVHGEVINRWSGLYKFSKGEIEKAINYANSKICLGSGSAGQVYQGVLPSGQLVAIKHIHKSAMSGSFMREVEGLSKVRHPNLVCLFGYCDDGGDQYLVYEYCANGNLAQNLLRSDSVLSWPARVKILRDCASVLRFLHTHPDGCIVHRDIKLTNILLTESMEPKLSDFGLAKMLQMEETKVFTDVRGTIGYMDPEYITHSKLTCASDIYSFGVVALQLLSGRKVIELDTVARDSLTKKARDVVSGKKPLDEFIDPRVRDEVNIEDFVLILKIAVLCVAHSSVGRPTIKDVFEEMDKALTNTDSKVGRAREEINPSSTIQYQYATGLNIV |
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| Function | Probable serine/threonine-protein kinase PBL28 [UniProtKB/Swiss-Prot:Q84M95] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| Os11g0448200 | Os11t0448200-01 | Chr11 | 14969237 | 14972247 | + | irgsp1_rep | ||
| CDS seq | ATGGAGAAGGTGCTTTTATGGATGGCTTTGATTATGGTAACTTCAGTTGGTTTTTGCAAGGGTGATCAAGATTTTGTTGCAGAAGGTGGATACATCAAGATAAAACGTAGCACATTTGCAGTAGTAATAGTTTTCACAGTCATGCTGATTGCTCTTATCATTGCACTCATGAGATACATGAGCAAAAAGAGCAAAGCTGATGAGACCATTGACTCAACAAGATCTTCTCAAGACAACAAGGTTCATGGGGAGGTGATCAACAGGTGGTCAGGGCTGTACAAGTTCAGCAAGGGCGAGATCGAGAAGGCGATAAACTACGCGAACAGCAAGATCTGCCTTGGCTCCGGTAGCGCAGGCCAGGTATACCAAGGAGTGCTACCGAGTGGTCAGCTTGTTGCGATCAAGCACATCCACAAGTCGGCCATGTCCGGGTCCTTCATGAGGGAGGTGGAAGGCCTTTCCAAGGTGAGGCACCCCAATCTGGTCTGCCTCTTTGGCTACTGTGATGATGGGGGTGACCAGTACCTTGTGTATGAGTATTGTGCCAATGGAAACCTGGCTCAGAACCTTCTAAGGAGTGACTCTGTGCTGTCCTGGCCAGCAAGGGTGAAGATTCTGAGGGATTGTGCATCTGTCTTGAGGTTTCTTCACACACACCCTGATGGATGCATTGTTCATAGAGACATTAAGCTCACTAACATCTTACTGACAGAGAGCATGGAGCCCAAGTTATCTGATTTCGGGCTGGCGAAGATGTTGCAAATGGAGGAGACTAAAGTTTTCACAGATGTGAGAGGGACCATTGGCTACATGGATCCAGAGTACATTACACATTCCAAGCTTACTTGTGCCAGTGACATCTACAGTTTTGGTGTGGTTGCACTGCAGCTCCTGTCAGGAAGGAAGGTCATTGAACTTGACACTGTTGCCAGGGATTCCCTTACAAAGAAGGCCAGGGATGTGGTGAGCGGGAAAAAACCATTGGACGAATTCATAGACCCCCGTGTTAGAGACGAGGTTAACATTGAAGATTTCGTGTTGATATTGAAAATTGCGGTCCTCTGCGTGGCGCATTCAAGTGTAGGGCGTCCAACAATAAAGGATGTTTTTGAGGAGATGGACAAAGCATTGACGAATACAGATTCAAAGGTTGGCAGAGCGAGAGAAGAGATAAACCCATCCAGTACAATCCAGTATCAGTATGCAACGGGGCTTAACATAGTATAG
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| Protein seq | MEKVLLWMALIMVTSVGFCKGDQDFVAEGGYIKIKRSTFAVVIVFTVMLIALIIALMRYMSKKSKADETIDSTRSSQDNKVHGEVINRWSGLYKFSKGEIEKAINYANSKICLGSGSAGQVYQGVLPSGQLVAIKHIHKSAMSGSFMREVEGLSKVRHPNLVCLFGYCDDGGDQYLVYEYCANGNLAQNLLRSDSVLSWPARVKILRDCASVLRFLHTHPDGCIVHRDIKLTNILLTESMEPKLSDFGLAKMLQMEETKVFTDVRGTIGYMDPEYITHSKLTCASDIYSFGVVALQLLSGRKVIELDTVARDSLTKKARDVVSGKKPLDEFIDPRVRDEVNIEDFVLILKIAVLCVAHSSVGRPTIKDVFEEMDKALTNTDSKVGRAREEINPSSTIQYQYATGLNIV
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | None | None | None |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_11g0245200 | SBH | 0.112508 | 0.000000 | 0.591653 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os11g26140 | RBH | 0.000000 | 0.0 | 0.0 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os11g0448000 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_11g0012900 | RBH | 0.335021 | 1.325318 | 4.380001 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_11g0012870 | RBH | 0.113032 | 1.952464 | 1.615793 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_11g0012850 | RBH | 0.211995 | 3.931649 | 6.524388 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_11g0012580 | SBH | 0.080457 | 0.395842 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_11g0012940 | SBH | 0.737208 | 11.435864 | 4.722742 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_11G0227200 | RBH | 0.029306 | 0.0200515 | 0.0067435 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_11g0012850 | RBH | 0.072639 | 0.767169 | 0.922685 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_11G0243100 | RBH | 0.0098175 | 0 | 0.00649 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_11g0012940 | RBH | 0.074295 | 0.122900 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_11g0013030 | SBH | 0.085634 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_11g0012660 | SBH | 0.552988 | 20.746149 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_11g0012520 | RBH | 0.265285 | 0.0 | 0.378438 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_11g0012870 | RBH | 0.122650 | 4.094280 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_11G012740 | RBH | 0.138571 | 1.720221 | 1.616678 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_11g0012830 | RBH | 0.381495 | 11.837672 | 4.638271 |
