Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| Os11g0201360 | OGI:11015700 | 16/16 | Nipponbare | IRGSP 1.0 | RAP-db | Chr11:5089294-5093366 | ||||||||
| Gene Symbol | Os_F0253 | ||||||||||
| DNA seq | AATCCGATACCTGCCTGATTCTTGCTTGGTATCATACCTGCTTTACAAAGTAGTTCTTTTTTTTTTTCCAAATTCCGCAATAGTAATCCAGCTTGTGCGTCGGTCCAAAATGAACTGAAATTTGATCAAATCTCCACAAAATACACAAAGGAAAGCATAAAACTGTCCTAGGGCATCGCAAGTTTATAAATCGCATGAACATTCAGTTCCAGTTCAGTAGCTGATCCAGCTTCAGTCATCACGAAAGATACTACCAAGTCAGGCCGTTAACGAAACATGGAGTAAGACTAATACCTAGTAGGTAGCTAATAAAACCACGTCCAGACACATCCAAGCAAATCGTATCAATAAACCTATGTTTCATTCCCTCAGTTGGAACCGATTTAAGAATATCCCCATTGGTTTGAAGCAGCAATACCAGATGGCAAATTAAGGAGAATTTAGATACATCGACAGCCCGGGTCTTCCGCAACTCTGTCTTGGTATGAATCCTGTCCAAACGAAATTAAAACCTGTAGGAAAAAAAAAAGAAAAATGCGTGCAATGGATTCAGAGAGGTCCTTCCTTGAAAAAGAAAAACAGAAGTGTCAACACGATTAAAAAAAAGGCAAAATAGTTCACCTTACAATAACAACACAAGAAATACCTGTAAGTCCGTACACTACCTTTTTTTTTATCAGGATCTGTACACTACCTGACATTGTTGACTTTATTCAGTCTTTCTTAGTTATGCAACTTTGTTCACTATTTAACATGTTGATAATATCTCCCCGCAAAAAAAAACATGATGATAATATCTAACAAAATTATAATATTATAGAAGTACATGTAAAGAAAAAATTACACATGGTTTTTATGTTTTCAAACTAAAAATTTACACATGTCTATTACTGTTCAAAGTTTCGAAAGGTTGACCAACTAAAATCAACAGTGTATATATTTAAATTCGAACGGAGTACATGATAATAGTTGAAGAACGGTACAAGAACAAATAAGAGAAAGCACAGATCCACTAGAGAATCAGACCTTGATACGTTTGTATGGAATAGATCATGCTGGCAGCAAATTCAAACAAAATTAACTCATATAGAATGGTCCAGGACTAAAAAGTAACAGATATTTACAATAATATAATGTCAGTCAACAACAATAAAATGATGCCCATAGTTATACGATTTGCAGGTCAGGGACTCAGATCAACTGAACATAAAATGTGATGGTCAGATTTGTGATTACTGTAATAGTGCAATTCGAGATAAATGCTTATTGCACATCTGACGGTAATTCTGCCAATTACGTGCATACAGTATAACTCATTCACTTAATCACTTCAACTAATATGAGATTCGGTCCCTTCTTCTAATTCATATGATATTTTCTTCACTTCTTTAAAAAAATGTAAATAAAAGAACAAAAAATGGTTTGTGCATAGCAGGGTAAGGTTCATGAACCATATTTGATGGCATTCCATTAATTTGTGTTTGGTCCTTCATAATACGAATGAAACCCCAAGTAAAGTTGGATACGAAATATTTAGTTTTTGAAGGAAAATGCAGGAGTGCTGCCTAATCCATTAAACAGCAAAAGATATTTGTGTGCCAACAGTCTTGGTAGTAGCACTGATAGCTGTAGCCACGTGCACAGTGAAATAATACTAGTTACTTGTAGAATCTCTGAATTTCAATTTAACATAATTGGGGTTTATTAACTTTAATACATCTTATACCTCAATTAAATCTATACTTGCCATTACTTCACTATGGAATAATAAAATGTACAAATTTTCTCACCAACTGTGAGGACTGGGGACTCTCCCACTTTTCATTTCACACCGAACATGAATGTGCACAGCTTTTATAAAAATATTTTTCTACTGTTAAGGAGTTTCTCTGGTTTATTTTTCAAAGATGTAAAAGAAAAGTGTAGGAATACAGATTGTCAATAGAAAACTTACACTCAGAAAATTGATTTGTTTGTTGGATATTAATTCTCTCAAGTGGTATTCCATAGCTGTTCAAGGACTTCATAAGTTTGTGAACTCTCTGGTCAATATCTTGACATTTAACTTCAACTGTCTTAAGGTTTTCTGATGTAAATGACTTTTCCATCGAATTGTAGATCGCTCTTGATCGAACATTGATTACTGATTTCTGCAGCAAGGAAAATATTATAATATAAGATAAATCATCCACGGATGATAGCACACAGTTATCTGAGCAAAACAGTTACCTTAGAAAGCTGAAGAGTGAGCTTCTCTAGAACCGGTGAGTGTTGAAGAATGCAAATTAGTGCACAGTGGTCAGAAGACTCAAACCACTGGCTGAGTAATAAAGTCTTCAAGTTAGTGAATGTAGGGCACCACCTCAAATCCCTTTTGAGAATAAACTGGACAGTTTTAAAAGCAACATCATCTCAATGTTTAATTTTTAAAGTAAAGTTGTAAACTTATTGATACGGTTAGAAGTTTTTCGAACTTAGCAGATAAGAATTATAGATACAACATGCAACCAAACAATTACATATCCCAATGCATATTGTGCAAATTTCTTTGATTTACAGATAAAACATCCAAACTCTACAGATTTTGCATGAAGTCATGAGAGATTTCTTTTTTCTTTTTGCATGGAAGAAGTCATGAGAGATTAACAACAATCAGAAACTTTCCTCAACATCATATTTTCGATACACGGTATGCCAGTATACATTGTATGATACACAGAAACTTCAAATTTTAATATATGAAAATGGAGTTATGGACCATCCTAGGTGACACTTGGTATTTAAAGCTCAAATTAGTTTGAGGTAACTTATTAAATGTAAGCATTCAAATATTTACTGATGGAAAGACAAAAGTAGTAGTAAGCATACCACTTCAGGATCAGCTATCAACTCCAAATTCGTAGCATCCGCCAAACCTTTTAGAAGCACACAGCCTGCACTACCATCATCAATGCCATAACAATGCGTACAGCCAGCAGGACAATACCCAGGATCATTGCCATCACAACAATCCTTACAGTAGAAGTCGAGCAGTAAAACTTTTGCTGCTACCAACACTGGCATGTCTTCAAGGAAAGGAGTTCTACCCTTGACAGCTATTAGTTTCAAGAAAAGTAGACTTGGTACAGAGATTCTTGTTCTCATCTTCGACTTAAACTTGCATTCACAGATCCTGAGACGCTTGAGGGACTTGGAAGATATTTTGTCAGCAGATATCTCGCAGTTGGTCATCTTCAGCTCTTTCAGTGCCGGACAGCTCGAGAAATCAAGAAACTTGCCATTTACACTCAGACGACTAAGCTCCAACCTTGTCAAGATTGGGGAGACTACAGGCAGATCAGTCAGCTGATGTCCACCGATGGCGAGAGTGAGCACCCGAACTTGGCACAGCAAGACATACCGAATCCAGAGGTTCACGATGGGCATGTCGTCTTTGGAGAATACATTGAAGTCGAACGTGCAAGATTCCAGGGGCGACCGGTCTCGGAGGAGAAGAAGATGGTACGTGAACGTGTGGAACGCCCGGGCGTCGCCGGCGCCGGTGACGCGCAGGATGGGCATGGACTTCCAGAGGTGGCGCCAGCGCCGGGCGAGCACGCAGGTGCGCACGACCTCCTTCGCCTGCAGGAACGACAGCACGTGCTGCAGGAGCGCGGTCGGGAGGAAGCTGATGCGGTCGTCGCCGCCCCCCTCCACCAACGCCTTCTTGCTCTCCGGAGACATTCCGTCGAACACCTTGCGAGCGTCAAAGGAGGAAAGAAACCTGCGGGATGAATGAAACCTCAACAATGTCACCCCGCACACGCCTGCACACGAACAGGACGAAAGATTCGTGGGCGCGTCGCGCCATCACCTCACCTTGGATCACCTCTCACCTGGCCAAGAAATTCACAGACCGGCTGAGAGGAGAGGAAGAGAACGAATCGATGATCAATGTGTATCTCTGATCGCGCGGGCTGGCTGAGAGAGAGAGAGAGAGGAAGAAGACGACTCGATCCTCGCCTCTATCCCCGACCAAGGGCCTAAGATCCAAGGCGCGGCGACGGCGGTTGATCGCCGTCGACGAGCCCCCT
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| CDS seq | ATGTCTCCGGAGAGCAAGAAGGCGTTGGTGGAGGGGGGCGGCGACGACCGCATCAGCTTCCTCCCGACCGCGCTCCTGCAGCACGTGCTGTCGTTCCTGCAGGCGAAGGAGGTCGTGCGCACCTGCGTGCTCGCCCGGCGCTGGCGCCACCTCTGGAAGTCCATGCCCATCCTGCGCGTCACCGGCGCCGGCGACGCCCGGGCGTTCCACACGTTCACGTACCATCTTCTTCTCCTCCGAGACCGGTCGCCCCTGGAATCTTGCACGTTCGACTTCAATGTATTCTCCAAAGACGACATGCCCATCGTGAACCTCTGGATTCGGTATGTCTTGCTGTGCCAAGTTCGGGTGCTCACTCTCGCCATCGGTGGACATCAGCTGACTGATCTGCCTGTAGTCTCCCCAATCTTGACAAGGTTGGAGCTTAGTCGTCTGAGTGTAAATGGCAAGTTTCTTGATTTCTCGAGCTGTCCGGCACTGAAAGAGCTGAAGATGACCAACTGCGAGATATCTGCTGACAAAATATCTTCCAAGTCCCTCAAGCGTCTCAGGATCTGTGAATGCAAGTTTAAGTCGAAGATGAGAACAAGAATCTCTGTACCAAGTCTACTTTTCTTGAAACTAATAGCTGTCAAGGGTAGAACTCCTTTCCTTGAAGACATGCCAGTGTTGGTAGCAGCAAAAGTTTTACTGCTCGACTTCTACTGTAAGGATTGTTGTGATGGCAATGATCCTGGGTATTGTCCTGCTGGCTGTACGCATTGTTATGGCATTGATGATGGTAGTGCAGGCTGTGTGCTTCTAAAAGGTTTGGCGGATGCTACGAATTTGGAGTTGATAGCTGATCCTGAAGTGTTTATTCTCAAAAGGGATTTGAGGTGGTGCCCTACATTCACTAACTTGAAGACTTTATTACTCAGCCAGTGGTTTGAGTCTTCTGACCACTGTGCACTAATTTGCATTCTTCAACACTCACCGGTTCTAGAGAAGCTCACTCTTCAGCTTTCTAAGAAATCAGTAATCAATGTTCGATCAAGAGCGATCTACAATTCGATGGAAAAGTCATTTACATCAGAAAACCTTAAGACAGTTGAAGTTAAATGTCAAGATATTGACCAGAGAGTTCACAAACTTATGAAGTCCTTGAACAGCTATGGAATACCACTTGAGAGAATTAATATCCAACAAACAAATCAATTTTCTGAGTGTTTTAATTTCGTTTGGACAGGATTCATACCAAGACAGAGTTGCGGAAGACCCGGGCTGTCGATGTATCTAAATTCTCCTTAA
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| Protein seq | MSPESKKALVEGGGDDRISFLPTALLQHVLSFLQAKEVVRTCVLARRWRHLWKSMPILRVTGAGDARAFHTFTYHLLLLRDRSPLESCTFDFNVFSKDDMPIVNLWIRYVLLCQVRVLTLAIGGHQLTDLPVVSPILTRLELSRLSVNGKFLDFSSCPALKELKMTNCEISADKISSKSLKRLRICECKFKSKMRTRISVPSLLFLKLIAVKGRTPFLEDMPVLVAAKVLLLDFYCKDCCDGNDPGYCPAGCTHCYGIDDGSAGCVLLKGLADATNLELIADPEVFILKRDLRWCPTFTNLKTLLLSQWFESSDHCALICILQHSPVLEKLTLQLSKKSVINVRSRAIYNSMEKSFTSENLKTVEVKCQDIDQRVHKLMKSLNSYGIPLERINIQQTNQFSECFNFVWTGFIPRQSCGRPGLSMYLNSP |
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| Function | - | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| Os11g0201360 | Os11t0201360-01 | Chr11 | 5089294 | 5093366 | - | irgsp1_rep | ||
| CDS seq | ATGTCTCCGGAGAGCAAGAAGGCGTTGGTGGAGGGGGGCGGCGACGACCGCATCAGCTTCCTCCCGACCGCGCTCCTGCAGCACGTGCTGTCGTTCCTGCAGGCGAAGGAGGTCGTGCGCACCTGCGTGCTCGCCCGGCGCTGGCGCCACCTCTGGAAGTCCATGCCCATCCTGCGCGTCACCGGCGCCGGCGACGCCCGGGCGTTCCACACGTTCACGTACCATCTTCTTCTCCTCCGAGACCGGTCGCCCCTGGAATCTTGCACGTTCGACTTCAATGTATTCTCCAAAGACGACATGCCCATCGTGAACCTCTGGATTCGGTATGTCTTGCTGTGCCAAGTTCGGGTGCTCACTCTCGCCATCGGTGGACATCAGCTGACTGATCTGCCTGTAGTCTCCCCAATCTTGACAAGGTTGGAGCTTAGTCGTCTGAGTGTAAATGGCAAGTTTCTTGATTTCTCGAGCTGTCCGGCACTGAAAGAGCTGAAGATGACCAACTGCGAGATATCTGCTGACAAAATATCTTCCAAGTCCCTCAAGCGTCTCAGGATCTGTGAATGCAAGTTTAAGTCGAAGATGAGAACAAGAATCTCTGTACCAAGTCTACTTTTCTTGAAACTAATAGCTGTCAAGGGTAGAACTCCTTTCCTTGAAGACATGCCAGTGTTGGTAGCAGCAAAAGTTTTACTGCTCGACTTCTACTGTAAGGATTGTTGTGATGGCAATGATCCTGGGTATTGTCCTGCTGGCTGTACGCATTGTTATGGCATTGATGATGGTAGTGCAGGCTGTGTGCTTCTAAAAGGTTTGGCGGATGCTACGAATTTGGAGTTGATAGCTGATCCTGAAGTGTTTATTCTCAAAAGGGATTTGAGGTGGTGCCCTACATTCACTAACTTGAAGACTTTATTACTCAGCCAGTGGTTTGAGTCTTCTGACCACTGTGCACTAATTTGCATTCTTCAACACTCACCGGTTCTAGAGAAGCTCACTCTTCAGCTTTCTAAGAAATCAGTAATCAATGTTCGATCAAGAGCGATCTACAATTCGATGGAAAAGTCATTTACATCAGAAAACCTTAAGACAGTTGAAGTTAAATGTCAAGATATTGACCAGAGAGTTCACAAACTTATGAAGTCCTTGAACAGCTATGGAATACCACTTGAGAGAATTAATATCCAACAAACAAATCAATTTTCTGAGTGTTTTAATTTCGTTTGGACAGGATTCATACCAAGACAGAGTTGCGGAAGACCCGGGCTGTCGATGTATCTAAATTCTCCTTAA
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| Protein seq | MSPESKKALVEGGGDDRISFLPTALLQHVLSFLQAKEVVRTCVLARRWRHLWKSMPILRVTGAGDARAFHTFTYHLLLLRDRSPLESCTFDFNVFSKDDMPIVNLWIRYVLLCQVRVLTLAIGGHQLTDLPVVSPILTRLELSRLSVNGKFLDFSSCPALKELKMTNCEISADKISSKSLKRLRICECKFKSKMRTRISVPSLLFLKLIAVKGRTPFLEDMPVLVAAKVLLLDFYCKDCCDGNDPGYCPAGCTHCYGIDDGSAGCVLLKGLADATNLELIADPEVFILKRDLRWCPTFTNLKTLLLSQWFESSDHCALICILQHSPVLEKLTLQLSKKSVINVRSRAIYNSMEKSFTSENLKTVEVKCQDIDQRVHKLMKSLNSYGIPLERINIQQTNQFSECFNFVWTGFIPRQSCGRPGLSMYLNSP
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | None | None | None |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_11g0201360 | RBH | 0.169138 | 0.000000 | 0.302288 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os11g09478 | RBH | 0.099321 | 0.0 | 0.000000 |
| Nipponbare | IRGSP 1.0 | RAP-db | NA | NA | NA | NA | NA |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_11g0006460 | RBH | 0.191376 | 3.567553 | 2.031024 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_11g0006480 | RBH | 0.000000 | 0.000000 | 0.261388 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_11g0006470 | SBH | 1.285396 | 0.405356 | 2.452377 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_11g0006360 | SBH | 0.052242 | 0.019900 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_11g0006360 | RBH | 0.398338 | 0.000000 | 1.493131 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_11G0083300 | RBH | 2.6366925 | 3.240256 | 2.232241 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_11g0006380 | RBH | 0.073635 | 0.000000 | 0.072674 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_11G0084800 | SBH | 2.744465 | 3.074941 | 5.580937 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_11g0006350 | RBH | 0.000000 | 0.000000 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_11g0006440 | RBH | 0.199360 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_11g0006430 | RBH | 0.000000 | 2.215235 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_11g0006440 | RBH | 0.163583 | 0.0 | 0.081721 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_11g0006460 | RBH | 0.044926 | 0.000000 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_11G006460 | RBH | 0.033394 | 0.315735 | 0.272511 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_11g0006250 | SBH | 0.315602 | 0.767232 | 1.540564 |
