Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| Os11g0201299 | OGI:11015700 | 16/16 | Nipponbare | IRGSP 1.0 | RAP-db | Chr11:5084166-5088705 | ||||||||
| Gene Symbol | Os_F0390, OsFbox577, Os_F0135 | ||||||||||
| DNA seq | GTCATGGCACAAGATACTGCCAAGATATCTTTGCAAAAGTCGTTAACAAAATCTGGATCAAAACTTGAGAGCTAATAAAATCTAGGTCCAGCCACATCTAGTTATCTACACAAAGTCGTATTACCAAGCCTCACCAACAGGTTTGGAACAGATTTTTAACACTCCCATTGGTTTCAGACAGCAACACCTGGTGACTGCAAACTTGCTCTACATCCATAGCAAATTAAGGAGACCGGATATACATGGACAGCTCGGATGCTTGGTAGCTCTGCCTTGGGATGAATCCTGTCCAAACGAAATTAAAACCTGTTGGAAAAAGATGAAAAAGCCGCAATGCATTCAGAGGTGTCATTTCCTCGGGGGAAAAAAAGAGGAATGTGATTACGATAAAAATTCAAGAAACTGGTAAGTCTGTAACATGTACGCAAGTTTAATAATCGAAGTGTGGTGGCAAGATAGAAAAGGGGACCCATATATTCACTAGAGAATCAGATCTTCACATGTTTTTACGAAATAGATCAGGCTGGCAGCAAATTCAAAAAAAAAACTATATATTGAATGCTGCAGAAGTAAAAAATCATAAACATTTACAATAATGTCAGTTGGCAACAATAAAATGGTGTGCACAGTTATATGACATGCAGCCTCGCAGATGAGGGACTCAGATCAACTGAATGTAAAATGTGATTGTCAGATTGTGATATGTTGTATGTAATTCAACGCAAATACTTATTGTGCATCTGAGGGTAAGTCTGCCGATTAAATGCATCCAGTATATTCTGTACCTTTTTCCCTTCATCAAATATGAGATTCTTCTGATTCATTCGATTGGTTGTTTGTTATATGAATAGAACCCCAGGTAAAGTTGGATATTGAATGATTCTTTTGAAGGGAAAGGGCAGGAGCACTGTTTAATCAACAAAGAATCAAAAGAGGTTTTGTTCAGGCTAATTTTGCAAGTGCTTGGCTCTTAAGCCCCATGCCCCCATTCCCGAAGGTCTACACTCTCAGTGGCAGTAATGATACAGTGGAAAATAAATTGTGCGTAAATTCATATTGGAGATTCAAATCAAAAAAGGTTGGCAACTTATCTTGTGTCAATGAGATCTAGATTGTCGGAACTTTGTCAAAATGAAAAGGAAGAGATAGATAGAAGCCCATTTAGATAAAAGCAAGCGTAGATAACTTCATATCTTTCTACACAATATTAATAACCAGCATGACATTGGAAAAAAAATTGGGGAAGCAGAGGCACATTGTCATAATGGCAGTGATGCCCAAGAGAAGGCGCATGGCTGGCAGAGGTGGTAAGATAAGGTATAGACCTCTTTCTTTGCTTCATCATCTAAGGATATGACGGTTGGCTCATGTGCCTGCTCTCCACAGTAATAATAGTCGATACTAAAAATACAACTACTAATAGGTAAGATACTCACGCAACTGAAAAGTCTAACTTAGTTTATGTTCCAACAGTCGTGGCAGTAGCATTGATAGCTGTAGCCTCATAGTTACTCTAGAATTTCTGAATTTCAAATCAAAATATAATATTCTCAAAAAAGTCAAAATATAATGGAGTTGAGTATGTGTTACAGTTTTACTTTAACATATATTATACCTTGGTTAAAAATAACATTTGCAATTACTCAAGTAGAGAATAAAATATTAAAATGTATAAGTATAAGTTCTCTCACCAACTGTGAGGATTTCCAACTTTTCATTACGCACCTAACATGAATGTGCCCAACTTATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATAGGAAAATGCAGATTTGCACTCGGGTTCACATGTACCTATAATCTACACTGTTGATGTGTTCCAAGATTCGTGTTGCAAAATGTACCTAACCTTAACCAAATGAATGCTTACTATAGGGAGAAAAGATGATTAGGATTAGGTTGGTTCACAATATGTATAACATGTATGTTGCATTTTTTACCAAATAATTTTTTCAATAATAATCATATATGACATTTATATATCTAGTGCATTGTATTTCTCTAACCCTTATTTTGTTTATAACATGATATCTAGTCAAAATGAGAAAACAATATATCTACTATATCATAAAATTGTCATCTTGCAAAAATGATATTTTCAAAATGATATATATCCTACCATCAATAACTACATAAACAAGATAATTTATATAAACAAGGTAAACTACATAAACAAGTTTTGCATACAAGAAATACAAAAATTACATAAACAAGGTATTTTACACTTGTAAAAAATATAGTATAACGTAAATATCATGCATGTTACATTTTGTTAGCACCTAATATACTTGCCCTAAGATTCGTGCAAGCTACATATAGGGTGTAGATTGTGGGTACATGTGAACTCGCGTGCAAAAAATCCAACTCCTATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATTCTACAGTTTAGGAGTTTCTCTGCTTAGTTTTCAGATATATAAAAGAGAACAGTAGAAAAACAGGATGCCTGAAGATCGGGTATAGAAAACTTACACTCATATGATTCATTTGTTTGTTGAATATTAATTTTCTCAGGTGGAATGCCGTAGCTGTTCAAGGACATAATAAGTTTATGAACTTTCTTGTCGATATCTTGACATTTAACTTCAACTGTCTTAAGGTTATCTGATGCAAATGATTTTCCCATCGAATTGTAGATTGCTCTTGATCGCATATTGATGTCAGGTTTCTGCAGCAAGAAAAATATTATAATAAGATAAATCATCCATAGATGGTAAATTTGATAGCATACAATTATCTATGAAGAAAATAGATACCTTAGAAAGCTGAAGAGTGAGCTTCTCTAGAAATGGTGAGTGTTGAAGAATGCAAATTAGTGCACAGTTTTCAGCAGACTCAAACCACTGAATGAGTAATAAAGTCTTCAGTTTGGTAAATGTGGGGCACCATCTCAAATCCCTTCTGAGAATAAACTGGACAGTTTTTTAAAGCAACATCAACTCAAGGTTAATTTTGAAGTAAAGTTGTAATATAATGAAACGGTTAGAAGTTTTTGGCACTTAGTTATAGTAGATATGAATTATAGATACTCAGCTAAACAACGTACCAAACAATTAAATACAGCCCATGCCATATTGTACAAATTTCTTTAATTTACAGATTAACTCATAGACTACAGATATTGCATGAAGTCGTGAGAGAATTAACAACAATCAGTAACCTTTGTCAAAATATTTTGAATATACAGCATGCTAGTATACACTGAATGATCATATACAGAAACTTCATATTTTTATGGTATATATGGACTGTCCAAACTCCAAAGTGACACTTGGAATTTAAAGCTCAAACTAATTTGACATATGCAACTTATTAAATGTAAGCATTTAAATATTTACTGATAAAATATAGTAGTAGTAGTAAGCGTACCACTTTAGGATCAGCTATCAACTCCAAATTCGAAGCATCAGCCAAACCTTTCAGAAGCACACAGCCTGCACTACCATCATCAATGCCATAACAATGCGTACAACCAATAGGACAATACCCAGGGTCACTGCTGTAACACTAATCCTTACAGTGGTAGCCAGACAGTATAACTTTTGCTGTTACCAACAGTGGCATATCTTCAAGGAAAGGAGTTCTACCCTTGAAAGCTATTAGTTGCAGGAAAAGGAGACTTGGTACAGAGATAACTGTCCTCCCGTCTGACTTTAGCTTGCATTCACAGATGCTCAGACGCTTGAGTGATTGGGAAGAGATTTTGTCAGCAGATATGGTGCATTTGGTCATCTTCAGCTCTTCCAGTGCCGGACAGCTCGAGAAATCAAGAAATTTGCCATGAACACTCATACCACCAAGCTCCAACGTAGTCAAGAATCCAGAGACTACAGGCAGATCGATGAGCCGAAGCCCAATGATATCAAGAGTGAGAACCCGAACTTGGCACGACAAGACATACCGAATCCAGAGGTTCGCGAATGGCGCGTCGTGCTTGGAGTATAAACAGAAGGCGAACACGCAAGCTTCCAGGGGCGATCGGTCTCGGAGGAGCTGGAGATGGTCCATGAACTTGTGGATCGCCTCGTCGGCGCCGGTGACGCGCAGGACGGGCACGGACTTCCAGAGGTGGCGCCAGCGCCGGGCGAGCACGCACGTGCGCACCACCTCCTTCGACTGCAGGAACGACAGCACGTGCCACAGGAGCGCGTCCGGGAGCGCGCCGATGTGGTCCCCGCCGCCGCCGCCCTCCACCGCCGCCTTCTTGCTCTTGGGAGACATTCCGTCGAACACTCTGCGCGCCTCAGGCGGTCAGAGCAAGAACGAAACCTGCGGGACGAGACCTCAGCAATCTCACCGACGCACACGCAGCGCACGCACACGCTCGCGCTCGCAGTGAAAGAGATCGGCGAGACACGGCGGTTGAGCGCCGTCGGCGAGCCGCGGGCCGGCGGGCGCCGGCGCACGCGGTGGAGGAACCTAGATAGGCAT
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| CDS seq | ATGTCTCCCAAGAGCAAGAAGGCGGCGGTGGAGGGCGGCGGCGGCGGGGACCACATCGGCGCGCTCCCGGACGCGCTCCTGTGGCACGTGCTGTCGTTCCTGCAGTCGAAGGAGGTGGTGCGCACGTGCGTGCTCGCCCGGCGCTGGCGCCACCTCTGGAAGTCCGTGCCCGTCCTGCGCGTCACCGGCGCCGACGAGGCGATCCACAAGTTCATGGACCATCTCCAGCTCCTCCGAGACCGATCGCCCCTGGAAGCTTGCGTGTTCGCCTTCTGTTTATACTCCAAGCACGACGCGCCATTCGCGAACCTCTGGATTCGGTATGTCTTGTCGTGCCAAGTTCGGGTTCTCACTCTTGATATCATTGGGCTTCGGCTCATCGATCTGCCTGTAGTCTCTGGATTCTTGACTACGTTGGAGCTTGGTGGTATGAGTGTTCATGGCAAATTTCTTGATTTCTCGAGCTGTCCGGCACTGGAAGAGCTGAAGATGACCAAATGCACCATATCTGCTGACAAAATCTCTTCCCAATCACTCAAGCGTCTGAGCATCTGTGAATGCAAGCTAAAGTCAGACGGGAGGACAGTTATCTCTGTACCAAGTCTCCTTTTCCTGCAACTAATAGCTTTCAAGGGTAGAACTCCTTTCCTTGAAGATATGCCACTGTTGGTAACAGCAAAAGTTATACTGTCTGGCTACCACTGTAAGGATTAG
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| Protein seq | MSPKSKKAAVEGGGGGDHIGALPDALLWHVLSFLQSKEVVRTCVLARRWRHLWKSVPVLRVTGADEAIHKFMDHLQLLRDRSPLEACVFAFCLYSKHDAPFANLWIRYVLSCQVRVLTLDIIGLRLIDLPVVSGFLTTLELGGMSVHGKFLDFSSCPALEELKMTKCTISADKISSQSLKRLSICECKLKSDGRTVISVPSLLFLQLIAFKGRTPFLEDMPLLVTAKVILSGYHCKD |
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| Function | F-box/LRR-repeat protein At3g26922 [UniProtKB/Swiss-Prot:Q9LJF8] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| Os11g0201299 | Os11t0201299-01 | Chr11 | 5084166 | 5088705 | - | irgsp1_rep | ||
| CDS seq | ATGTCTCCCAAGAGCAAGAAGGCGGCGGTGGAGGGCGGCGGCGGCGGGGACCACATCGGCGCGCTCCCGGACGCGCTCCTGTGGCACGTGCTGTCGTTCCTGCAGTCGAAGGAGGTGGTGCGCACGTGCGTGCTCGCCCGGCGCTGGCGCCACCTCTGGAAGTCCGTGCCCGTCCTGCGCGTCACCGGCGCCGACGAGGCGATCCACAAGTTCATGGACCATCTCCAGCTCCTCCGAGACCGATCGCCCCTGGAAGCTTGCGTGTTCGCCTTCTGTTTATACTCCAAGCACGACGCGCCATTCGCGAACCTCTGGATTCGGTATGTCTTGTCGTGCCAAGTTCGGGTTCTCACTCTTGATATCATTGGGCTTCGGCTCATCGATCTGCCTGTAGTCTCTGGATTCTTGACTACGTTGGAGCTTGGTGGTATGAGTGTTCATGGCAAATTTCTTGATTTCTCGAGCTGTCCGGCACTGGAAGAGCTGAAGATGACCAAATGCACCATATCTGCTGACAAAATCTCTTCCCAATCACTCAAGCGTCTGAGCATCTGTGAATGCAAGCTAAAGTCAGACGGGAGGACAGTTATCTCTGTACCAAGTCTCCTTTTCCTGCAACTAATAGCTTTCAAGGGTAGAACTCCTTTCCTTGAAGATATGCCACTGTTGGTAACAGCAAAAGTTATACTGTCTGGCTACCACTGTAAGGATTAG
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| Protein seq | MSPKSKKAAVEGGGGGDHIGALPDALLWHVLSFLQSKEVVRTCVLARRWRHLWKSVPVLRVTGADEAIHKFMDHLQLLRDRSPLEACVFAFCLYSKHDAPFANLWIRYVLSCQVRVLTLDIIGLRLIDLPVVSGFLTTLELGGMSVHGKFLDFSSCPALEELKMTKCTISADKISSQSLKRLSICECKLKSDGRTVISVPSLLFLQLIAFKGRTPFLEDMPLLVTAKVILSGYHCKD
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | None | None | None |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_11g0201299 | RBH | 0.0 | 0.0 | 0.0 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os11g09474 | RBH | 0.636405 | 0.283697 | 0.169219 |
| Nipponbare | IRGSP 1.0 | RAP-db | NA | NA | NA | NA | NA |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_11g0006460 | SBH | 0.191376 | 3.567553 | 2.031024 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_11g0006460 | RBH | 0.241922 | 1.505629 | 0.978664 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_11g0006470 | RBH | 1.285396 | 0.405356 | 2.452377 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_11g0006360 | RBH | 0.052242 | 0.019900 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_11g0006330 | RBH | 4.760759 | 3.529567 | 3.502955 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_11G0089800 | SBH | 0.4881505 | 1.281045 | 0.838145 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_11g0006360 | RBH | 0.139574 | 0.055674 | 0.531727 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_11G0084800 | RBH | 2.744465 | 3.074941 | 5.580937 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_11g0006330 | RBH | 0.000000 | 0.000000 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_11g0006420 | RBH | 0.158279 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_11g0006410 | RBH | 4.687671 | 2.191692 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_11g0006420 | RBH | 0.096540 | 0.0 | 0.254378 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_11g0006440 | RBH | 0.318620 | 1.923667 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_11G006440 | RBH | 0.385030 | 0.620081 | 0.225241 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_11g0006250 | RBH | 0.315602 | 0.767232 | 1.540564 |
