Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| Os10g0170501 | OGI:10016980 | 3/16 | Nipponbare | IRGSP 1.0 | RAP-db | Chr10:4848139-4849125 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | CGCGATGACCTGCAGTGGGTGACGGCCTGCACGATGGCGTGGGCGCGGCGTGCGGGGTCGCCGCTCTTGAAGATGCCCGAGCTGACGAAGACGCCGTCGCAGCCGGGCTGCATCATGAGGGCGGCGTCGGCGGGGGTGGCGACGTTGCCGGTCGCGAACTGCACGACGGGGAGGCGGCCCAGCTGCTTGGTCTGCATGACGAGGTCGTAGGGCGCGGCGATGCGGTTGGCGTAGGCGAAGACCTCGTCGTCGTCCATGTTGTGGAGCGCGCGGATTTCACCCATGATGGAGCACTCGTGGCGGACGGCCTCGACGACGTTGCCAGTGCCTCACAGACACGGCTGCGCGGCTTCCTCGGGCAGCTCACCGCGGAGCATGCGACGAGGGGGCGGTGTGCTTGGACGTGACGACGCGGGTGGGCCACGGCGAGGTGATGAGGTCGACGAGGCGGGCGGCATGGGAGCGCGACGCGAAGAAGTCGAGCCCGCCGCCGCCGCCGCGCATCGCGCCGACGCGGAGGGCGTCGCCGGCAGCGCCGTGGGCGATGCGCCGCCGCCGCCGCCCCGCCGTGGCCGAGCCGTCCCGGCTCGGGCCGGTTGCCGTCGCCCTCTGCTCCACTGCGAAGAAGAAGATGGGGAAAAGAAAAGAAGTGAGAGGAAGAACACTGTACAGGGGTATTTTGGTACTTACGCAACTCTTCTCTCTCCATTTTGACCGGAAATAATAAAATAATGGGATGAGTGTCCAGCAGCTAATTACCACTTTTTTATAGTGTCCACGAGCAAATACACGATCTTCGGGTGTCTCACAGCAAAGACCGTAATCTTTCAGTGTCTTGTAACAAATTTTGCCTAAAAGAATTGTAGTGGGGAGAGAAGCAAGGAGAGGAGGTGAGGAATTCCAGGGAAGAGAGAGAGGATTAGAGGGGACTGGCTTTAAAGATGAATCCAGCTCTTTTTGGATACAATGTATGTATTTGTAATACAT
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| CDS seq | ATGTATTACAAATACATACATTGTATCCAAAAAGAGCTGGATTCATCTTTAAAGCCAGTCCCCTCTAATCCTCTCTCTCTTCCCTGGAATTCCTCACCTCCTCTCCTTGCTTCTCTCCCCACTACAATTCTTTTAGGCAAAATTTGTTACAAGACACTGAAAGATTACGGTCTTTGCTGTGAGACACCCGAAGATCGTGTATTTGCTCGTGGACACTATAAAAAAGTGGTAATTAGCTGCTGGACACTCATCCCATTATTTTATTATTTCCGGTCAAAATGGAGAGAGAAGAGTTGCGTAAGTACCAAAATACCCCTGTACAGTGTTCTTCCTCTCACTTCTTTTCTTTTCCCCATCTTCTTCTTCGCAGTGGAGCAGAGGGCGACGGCAACCGGCCCGAGCCGGGACGGCTCGGCCACGGCGGGGCGGCGGCGGCGGCGCATCGCCCACGGCGCTGCCGGCGACGCCCTCCGCGTCGGCGCGATGCGCGGCGGCGGCGGCGGGCTCGACTTCTTCGCGTCGCGCTCCCATGCCGCCCGCCTCGTCGACCTCATCACCTCGCCGTGGCCCACCCGCGTCGTCACGTCCAAGCACACCGCCCCCTCGTCGCATGCTCCGCGGTGA
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| Protein seq | MYYKYIHCIQKELDSSLKPVPSNPLSLPWNSSPPLLASLPTTILLGKICYKTLKDYGLCCETPEDRVFARGHYKKVVISCWTLIPLFYYFRSKWREKSCVSTKIPLYSVLPLTSFLFPIFFFAVEQRATATGPSRDGSATAGRRRRRIAHGAAGDALRVGAMRGGGGGLDFFASRSHAARLVDLITSPWPTRVVTSKHTAPSSHAPR |
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| Function | - | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| Os10g0170501 | Os10t0170501-00 | Chr10 | 4848139 | 4849125 | - | irgsp1_rep | ||
| CDS seq | ATGTATTACAAATACATACATTGTATCCAAAAAGAGCTGGATTCATCTTTAAAGCCAGTCCCCTCTAATCCTCTCTCTCTTCCCTGGAATTCCTCACCTCCTCTCCTTGCTTCTCTCCCCACTACAATTCTTTTAGGCAAAATTTGTTACAAGACACTGAAAGATTACGGTCTTTGCTGTGAGACACCCGAAGATCGTGTATTTGCTCGTGGACACTATAAAAAAGTGGTAATTAGCTGCTGGACACTCATCCCATTATTTTATTATTTCCGGTCAAAATGGAGAGAGAAGAGTTGCGTAAGTACCAAAATACCCCTGTACAGTGTTCTTCCTCTCACTTCTTTTCTTTTCCCCATCTTCTTCTTCGCAGTGGAGCAGAGGGCGACGGCAACCGGCCCGAGCCGGGACGGCTCGGCCACGGCGGGGCGGCGGCGGCGGCGCATCGCCCACGGCGCTGCCGGCGACGCCCTCCGCGTCGGCGCGATGCGCGGCGGCGGCGGCGGGCTCGACTTCTTCGCGTCGCGCTCCCATGCCGCCCGCCTCGTCGACCTCATCACCTCGCCGTGGCCCACCCGCGTCGTCACGTCCAAGCACACCGCCCCCTCGTCGCATGCTCCGCGGTGA
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| Protein seq | MYYKYIHCIQKELDSSLKPVPSNPLSLPWNSSPPLLASLPTTILLGKICYKTLKDYGLCCETPEDRVFARGHYKKVVISCWTLIPLFYYFRSKWREKSCVSTKIPLYSVLPLTSFLFPIFFFAVEQRATATGPSRDGSATAGRRRRRIAHGAAGDALRVGAMRGGGGGLDFFASRSHAARLVDLITSPWPTRVVTSKHTAPSSHAPR
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | None | None | None |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_10g0170501 | RBH | 0.0 | 0.0 | 0.0 |
| Nipponbare | IRGSP 1.0 | MSU | NA | NA | NA | NA | NA |
| Nipponbare | IRGSP 1.0 | RAP-db | NA | NA | NA | NA | NA |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_10g0020660 | SBH | 2.738469 | 5.299150 | 6.790996 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_10g0021220 | SBH | 0.516037 | 0.341751 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_10G0085200 | RBH | 0 | 0 | 0 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_10g0020700 | SBH | 0.665093 | 1.338997 | 1.517448 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_10G0093400 | RBH | 0 | 0 | 0 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_10g0020540 | SBH | 0.593514 | 0.133578 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_10g0020440 | SBH | 0.979794 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_10g0020520 | SBH | 1.278080 | 0.0 | 1.726086 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_10G020870 | SBH | 0.812684 | 5.228424 | 3.097281 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_10g0020910 | SBH | 2.668667 | 14.570814 | 6.993043 |
