Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| Os09g0414500 | OGI:09043620 | 15/16 | Nipponbare | IRGSP 1.0 | RAP-db | Chr09:14793742-14794393 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | ATTGCTGCAAAGCTTGGTGCCGAGTGAGAGAGCAGCAAAGCGAGAGTGTGCGTGCGTGGGCGTGTCGCGCCATGATGAAGAGGCTGGTGGTCCTGAGGAGGCGGGAGCCGGCGGTGAGGTTCAGCTGCTGCGGCGTCAGGTACGGCGAGTGCCGCCGCAACCACGCGGCCAGCACCGGCGGCCACGCCGTCGACGGCTGCCGCGAGTTCATCGCCGCCGAGGACGGCGGCGGCGGCAACAGCACAAGCGCCGTGGGCGTCGCCGCGGCGGCGCTCAAGTGCGCCGCCTGCGGCTGCCACCGCAGCTTCCACCGCAGGGTGCAGGTGTACGAGGTGGCCTGGGACGACGACTGCGCCTCCGGCGACACCTCCTCCTCCTCGCCGTCGTCGTCGTCCTCGTTGAGCAGCGAGTAGACCAGCTGCGGCAATGGCGGCGGCGCGCCGCCGCCGCAGCTGCCGTCTCCGGCCGGTGCATCGTCATGCTGCATGCCTAGGATATGATCAGACCTCGCGATTGTTAATTAATTAATTAATTAATTAATTATTAGCTTGTGTAATCTGTATACCCATGGATTGATTGACCCTATTCCCCCCAAGTGATTATTTGCTCTCATCTCTAATTAATCAATTAATTAATGCCTTATTTTAACTTT
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| CDS seq | ATGATGAAGAGGCTGGTGGTCCTGAGGAGGCGGGAGCCGGCGGTGAGGTTCAGCTGCTGCGGCGTCAGGTACGGCGAGTGCCGCCGCAACCACGCGGCCAGCACCGGCGGCCACGCCGTCGACGGCTGCCGCGAGTTCATCGCCGCCGAGGACGGCGGCGGCGGCAACAGCACAAGCGCCGTGGGCGTCGCCGCGGCGGCGCTCAAGTGCGCCGCCTGCGGCTGCCACCGCAGCTTCCACCGCAGGGTGCAGGTGTACGAGGTGGCCTGGGACGACGACTGCGCCTCCGGCGACACCTCCTCCTCCTCGCCGTCGTCGTCGTCCTCGTTGAGCAGCGAGTAG |
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| Protein seq | MMKRLVVLRRREPAVRFSCCGVRYGECRRNHAASTGGHAVDGCREFIAAEDGGGGNSTSAVGVAAAALKCAACGCHRSFHRRVQVYEVAWDDDCASGDTSSSSPSSSSSLSSE |
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| Function | Mini zinc finger protein 2 [UniProtKB/Swiss-Prot:Q6ER22] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| Os09g0414500 | Os09t0414500-01 | Chr09 | 14793742 | 14794393 | + | irgsp1_rep | ||
| CDS seq | ATGATGAAGAGGCTGGTGGTCCTGAGGAGGCGGGAGCCGGCGGTGAGGTTCAGCTGCTGCGGCGTCAGGTACGGCGAGTGCCGCCGCAACCACGCGGCCAGCACCGGCGGCCACGCCGTCGACGGCTGCCGCGAGTTCATCGCCGCCGAGGACGGCGGCGGCGGCAACAGCACAAGCGCCGTGGGCGTCGCCGCGGCGGCGCTCAAGTGCGCCGCCTGCGGCTGCCACCGCAGCTTCCACCGCAGGGTGCAGGTGTACGAGGTGGCCTGGGACGACGACTGCGCCTCCGGCGACACCTCCTCCTCCTCGCCGTCGTCGTCGTCCTCGTTGAGCAGCGAGTAG
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| Protein seq | MMKRLVVLRRREPAVRFSCCGVRYGECRRNHAASTGGHAVDGCREFIAAEDGGGGNSTSAVGVAAAALKCAACGCHRSFHRRVQVYEVAWDDDCASGDTSSSSPSSSSSLSSE |
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | None | None | None |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_09g0414500 | RBH | 0.0 | 0.0 | 0.0 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os09g24810 | RBH | 0.0 | 0.0 | 0.0 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os08g0438100 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_09g0010230 | RBH | 0.0 | 0.0 | 0.0 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_09g0010180 | RBH | 0.0 | 0.0 | 0.443729 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_09g0010480 | RBH | 0.0 | 0.0 | 0.0 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_09g0010240 | RBH | 0.0 | 0.082040 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_09g0010350 | RBH | 0.0 | 0.0 | 0.0 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_09G0296200 | SBH | 2.8584855 | 0.0188195 | 7.0523605 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_09g0010330 | RBH | 0.0 | 0.0 | 0.0 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_09G0235600 | RBH | 3.2368085 | 0 | 1.00811 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_09g0010310 | RBH | 0.0 | 0.0 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_09g0010080 | RBH | 0.0 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_09g0010240 | RBH | 0.0 | 0.0 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_09g0010040 | RBH | 0.0 | 0.0 | 0.0 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_09g0010110 | RBH | 0.0 | 0.0 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_09G010580 | RBH | 0.0 | 0.0 | 0.738650 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_09g0010370 | RBH | 0.0 | 0.0 | 0.0 |
