Rice Gene Index (RGI): a comprehensive pan-genome database for comparative and functional genomics of Asian rice.

Basic Info

Gene ID		OGI # \| Score			Accession \| Assembly \| Annotation			Location		Links
Os08g0543100		OGI:08077390 \| 15/16			Nipponbare \| IRGSP 1.0 \| RAP-db			Chr08:27181693-27185268		Homologues MicroCollinearity RGI-JBrowse RAP-DB Ricevarmap2
Gene Symbol		-
DNA seq		TTAACAGGGTCTTTCTTCTATGAAGTCTCTGTTCAGACATGGAATATTAGAGACATACTCCCAGTACTCCCCTCCTCTTCTGCATCGCTTATCTAACTTGTGGCTTCCTAGTGTCATTAGCTTCCTGAGGTTTGGCAGTCGCTGAAGAAGACTCTGTGGCAGTGTCTCTACCCCAGGGCACTGCCGAACACATAGTTCCTGAAGACCAGTGAGGCCATCCATAACATCAGGCAAATTTCTCAGACTTGAGCAAGAAAATAATGTGAGATCTCTCAACTTGGCAAGTCTTGCAAGATTTGGTGGCAGAGACACCAAAGAAGTGCATTCATTAATGCGTAGTGTCTCCAGTGAAGCAGGGAGCTTGGGAATCTCTAATAAGTTATTGCAAAATTCTATGTACAACTTTTCCAGACCAGACGGGAATAAGGATTCTTCTGATGATGAACTGGTCAGATTCTTGCAATAACTAAATCTTACACAACGAAGGGAATTCAAGCCACAGAGCTCCTTCACAGGCCAATGGACAAGATCGTCGCATAATACTATCGACAATTCTTCCACAAATGCAAAGCAATCCCAGAAACCAAAGGGCCAGTTTGACGAATTAGGTGAGAAGAAACAACTAGAATACCAAATGCTCAGCTTCTGAATTGATTCCAGAGGGGGCATGGTCGTCTGCTGCTCATCTGGGAGAAGCGAGTTCCCTAAAGAGGCTAGCGCTAATGTCACAAGAGATGGCCAGGAGCGTATTGGTATTACCTGCAAATCCTTAGAAACACTCCAGTCACCAACATAGTTGAGTTGGGAAAGTGCTGCAAGATGGCTGAGTGAGTTCAGTGCAATTCTGCACTGGAATATATCCAGCTCTCGTAGGATAGGAGCTTTTGGAATATTCACTAGCTTTGGACAATTGTAAATTTTTAATTCTTTGAGCTCAGGGAACATCACCGATGTTACTTCATTGTCCATCCATTTCTCCAAGTTAGGTAAGTAATGTAAATGCATCTTCTTCAGCTTTGGAAAAATTTCCAGGGAACCATTGCATCCTGGAACAGCCATGTCAATGCCACTAGATAATGTGGTCAAATTATCCAAACGGGATAAAGACAGGGACTCAAGAGAGACAGACTGCCATAACGGTGGTAGATCCTTACATCTCCAGCACTCAGACATGTGGAGTTCTTTTAGGCATAGGAAAATTGCGGGGTTTTTCATCCATGATGACATTTCAATATGACCAGAGCCCCATACCTGCAATGTTTCAAGTCTGCTAGGAGGTAAAGAGAACTCTACGATCTCCTTTTTGTTGTCAACAACATCGAGATCAAAGTCATGGTCACTGTACTCGAATATATCATGACACCAGTGCAACAACAACTCAGTTACATTTTCTTGGATATGGAGATTGGCTTCTCTTGCATTTGACCCACTTTGTATAGCTTTCAGATTAAACAGTTCTAGTCGGCCACCTAGATGATGCAAGTCTTTCAGTTCTTCAAGCCCACATCCATCTTTGGTATCCACAACAAATGTGGTAAGAGTCCGGAGGTTCTTTAGCTGACCAATTCTTGGTGGCATGCGTTTCAAGCTATGACAACCAATAAGATAAAGGTGCCTGAGCTTGCTCATAAATCTCATACCCTCTGGTAAATGCTGAAGTTTCAAGCAACCATTTAACCTCAAAGCTTGCAAGCTGTATAACATACATATTGAATCAGGTAAATGTTCTAGCTTACTAGAATGAGAAAGATCAAGGTATCGTAAGTGTGTTATACTTGCTAATGCCTTTGGAGAAACATTCAATTTATCATTATGCAATGCTCGTAAAGACGTCAAGTTTAATCTCTTGATATTTCTGGGTAGTGGTGATGATTTTGACCAATATGGTGACAATAATGTGTGAAGAGGTCCCACATGTTTAAATAATTCACTGTTCTCTTGCAACTTGGCACTTGACATCAGATGGCGGACATCTTTCATCGAGGCTTTTTGCTGGTTCAGGTCTTGCGCATCAACACATTCCTCTGTGACAGATTTTGCTAGATCATGCATTAGATCATGCATGTAGCATGTAATTGACTTGTAAGTCTGTTTAATCCCGACATGAAAACTTTCTACCTTTACATCTTGGAAGAAGGACCTCCACACTAGCTCATTGAAAACAAACTGTCCTCTCTCTTCCAAATCCATCATCCCCTCCTCTTGGATGAAATTATTCGCTATCCAGAGCTGGACCAACTTGTCCCTCTCCATCTGGTAGTCCTTTGGGAAGATTGCGCAAAAGGCAAAACATTGCTTCATTTCAAGTGGTAAGTGCCTATAGCTCAGTTTTAGTATGGATAGGATCTCATTTGTAGTCCCAACATCCTCCCAACTCTTGCTTCCTGCAATAGCTTCCCATTCCTGGATTCGCTTCTTGGAACTCATAAGGCCTCCCATTGTCTTCAGAGCAAGAGGTAACCCTTTGCACTTCTTGACAATACGATTGCCAATCTCTGCAAACTCTGGCTGCTGCTCCTCTTCTTTACTGAATGCTTTCTTCCGGAATAATTCCCATGAATCATCATGGTTTAGGTATGATAGCGTGTGAGCAGGAACTGTGCCCATTATGGATGCTACCCGCTGGCTCCGAGTTGTGACAAGTACTACACTTCCTGGAGCACCAGCAGAATGCAGCAATGGCCTCAGCTCCTCCCATTTATGTTCCTCCTCATTCCAAACATCATCAAGAACAAGTAGATACCTTTTGCGGCCTACCACCTCATGTAGACGGCTGCGCAATAGTTCGATTCTGTCTGGCAAGGTGCAATTTCCCCTGGTAGCCAATTCAATAATGGATCTGACTAGAGAAACAACATTGAAATCATCTGAGACACAGAGCCACATGGGCAACTCAAAGCGTTGTTGAACCCTTGTGTCGTTGTACACCATCTTCGCAAGTGTGGTCTTGCCCAATCCCCCCATCCCTACGATTGATAGCACCTCAACCATCCGCTTGGATCGCTGCTCAAGTAACAAATTCACCACCATCTCCTTGTCGTCGTCTCTGCCAACGATCTCCATCAAGCTATCGAGGCCGGAGTGCGTCTGAGGATGGATCACATGTACTGTTGCCTGATCTGCACGCTCCACTAGGCCAAACTTGTTCATCTCTTCAACCAGCTCGTTGATCTTCTTGAGGACACTGTTCAGCTTCTTGCTCATGGCAACACGGAACAGGAGGGGGCTGTGCGGCGTGAAGTAGCCGAGTACCTTGTCGGTGGTGGAGTCGCCGATCTGGGCGTCGCGGCGCAGTGCCTCGTAGTGGAAGTCGTCGAGGACGTCGTCGGCCTCGTACGCGACGGCCTTGAGGTCCTTCATCCACCTCTTCACGGCGGGGCTGGTCTCGCTCTTCGCCTCGGCGTCGGACAGCTTGCACTGGACGGCCAGAAGCTGGCGCTCCAGCTTGTGGCGATCGCCGTCGACGCCGCACATGCGAGTGACGCTCTGGACGAGCGCGCCGGCCGCCTTGCCGACCACCCCGCGCACCACCGGGAGGAGCAGCGATTCTGCCATGCTTCTACCACTACTCAGCTC More
CDS seq		ATGGCAGAATCGCTGCTCCTCCCGGTGGTGCGCGGGGTGGTCGGCAAGGCGGCCGGCGCGCTCGTCCAGAGCGTCACTCGCATGTGCGGCGTCGACGGCGATCGCCACAAGCTGGAGCGCCAGCTTCTGGCCGTCCAGTGCAAGCTGTCCGACGCCGAGGCGAAGAGCGAGACCAGCCCCGCCGTGAAGAGGTGGATGAAGGACCTCAAGGCCGTCGCGTACGAGGCCGACGACGTCCTCGACGACTTCCACTACGAGGCACTGCGCCGCGACGCCCAGATCGGCGACTCCACCACCGACAAGGTACTCGGCTACTTCACGCCGCACAGCCCCCTCCTGTTCCGTGTTGCCATGAGCAAGAAGCTGAACAGTGTCCTCAAGAAGATCAACGAGCTGGTTGAAGAGATGAACAAGTTTGGCCTAGTGGAGCGTGCAGATCAGGCAACAGTACATGTGATCCATCCTCAGACGCACTCCGGCCTCGATAGCTTGATGGAGATCGTTGGCAGAGACGACGACAAGGAGATGGTGGTGAATTTGTTACTTGAGCAGCGATCCAAGCGGATGGTTGAGGTGCTATCAATCGTAGGGATGGGGGGATTGGGCAAGACCACACTTGCGAAGATGGTGTACAACGACACAAGGGTTCAACAACGCTTTGAGTTGCCCATGTGGCTCTGTGTCTCAGATGATTTCAATGTTGTTTCTCTAGTCAGATCCATTATTGAATTGGCTACCAGGGGAAATTGCACCTTGCCAGACAGAATCGAACTATTGCGCAGCCGTCTACATGAGGTGGTAGGCCGCAAAAGGTATCTACTTGTTCTTGATGATGTTTGGAATGAGGAGGAACATAAATGGGAGGAGCTGAGGCCATTGCTGCATTCTGCTGGTGCTCCAGGAAGTGTAGTACTTGTCACAACTCGGAGCCAGCGGGTAGCATCCATAATGGGCACAGTTCCTGCTCACACGCTATCATACCTAAACCATGATGATTCATGGGAATTATTCCGGAAGAAAGCATTCAGTAAAGAAGAGGAGCAGCAGCCAGAGTTTGCAGAGATTGGCAATCGTATTGTCAAGAAGTGCAAAGGGTTACCTCTTGCTCTGAAGACAATGGGAGGCCTTATGAGTTCCAAGAAGCGAATCCAGGAATGGGAAGCTATTGCAGGAAGCAAGAGTTGGGAGGATGTTGGGACTACAAATGAGATCCTATCCATACTAAAACTGAGCTATAGGCACTTACCACTTGAAATGAAGCAATGTTTTGCCTTTTGCGCAATCTTCCCAAAGGACTACCAGATGGAGAGGGACAAGTTGGTCCAGCTCTGGATAGCGAATAATTTCATCCAAGAGGAGGGGATGATGGATTTGGAAGAGAGAGGACAGTTTGTTTTCAATGAGCTAGTGTGGAGGTCCTTCTTCCAAGATGTAAAGGTAGAAAGTTTTCATGTCGGGATTAAACAGACTTACAAGTCAATTACATGCTACATGCATGATCTAATGCATGATCTAGCAAAATCTGTCACAGAGGAATGTGTTGATGCGCAAGACCTGAACCAGCAAAAAGCCTCGATGAAAGATGTCCGCCATCTGATGTCAAGTGCCAAGTTGCAAGAGAACAGTGAATTATTTAAACATGTGGGACCTCTTCACACATTATTGTCACCATATTGGTCAAAATCATCACCACTACCCAGAAATATCAAGAGATTAAACTTGACGTCTTTACGAGCATTGCATAATGATAAATTGAATGTTTCTCCAAAGGCATTAGCAAGTATAACACACTTACGATACCTTGATCTTTCTCATTCTAGTAAGCTAGAACATTTACCTGATTCAATATGTATGTTATACAGCTTGCAAGCTTTGAGGTTAAATGGTTGCTTGAAACTTCAGCATTTACCAGAGGGTATGAGATTTATGAGCAAGCTCAGGCACCTTTATCTTATTGGTTGTCATAGCTTGAAACGCATGCCACCAAGAATTGGTCAGCTAAAGAACCTCCGGACTCTTACCACATTTGTTGTGGATACCAAAGATGGATGTGGGCTTGAAGAACTGAAAGACTTGCATCATCTAGGTGGCCGACTAGAACTGTTTAATCTGAAAGCTATACAAAGTGGGTCAAATGCAAGAGAAGCCAATCTCCATATCCAAGAAAATGTAACTGAGTTGTTGTTGCACTGGTGTCATGATATATTCGAGTACAGTGACCATGACTTTGATCTCGATGTTGTTGACAACAAAAAGGAGATCGTAGAGTTCTCTTTACCTCCTAGCAGACTTGAAACATTGCAGGTATGGGGCTCTGGTCATATTGAAATGTCATCATGGATGAAAAACCCCGCAATTTTCCTATGCCTAAAAGAACTCCACATGTCTGAGTGCTGGAGATGTAAGGATCTACCACCGTTATGGCAGTCTGTCTCTCTTGAGTCCCTGTCTTTATCCCGTTTGGATAATTTGACCACATTATCTAGTGGCATTGACATGGCTGTTCCAGGATGCAATGGTTCCCTGGAAATTTTTCCAAAGCTGAAGAAGATGCATTTACATTACTTACCTAACTTGGAGAAATGGATGGACAATGAAGTAACATCGGTGATGTTCCCTGAGCTCAAAGAATTAAAAATTTACAATTGTCCAAAGCTAGTGAATATTCCAAAAGCTCCTATCCTACGAGAGCTGGATATATTCCAGTGCAGAATTGCACTGAACTCACTCAGCCATCTTGCAGCACTTTCCCAACTCAACTATGTTGGTGACTGGAGTGTTTCTAAGGATTTGCAGGTAATACCAATACGCTCCTGGCCATCTCTTGTGACATTAGCGCTAGCCTCTTTAGGGAACTCGCTTCTCCCAGATGAGCAGCAGACGACCATGCCCCCTCTGGAATCAATTCAGAAGCTGAGCATTTGGTATTCTAGTTGTTTCTTCTCACCTAATTCGTCAAACTGGCCCTTTGGTTTCTGGGATTGCTTTGCATTTGTGGAAGAATTGTCGATAGTATTATGCGACGATCTTGTCCATTGGCCTGTGAAGGAGCTCTGTGGCTTGAATTCCCTTCGTTGTGTAAGATTTAGTTATTGCAAGAATCTGACCAGTTCATCATCAGAAGAATCCTTATTCCCGTCTGGTCTGGAAAAGTTGTACATAGAATTTTGCAATAACTTATTAGAGATTCCCAAGCTCCCTGCTTCACTGGAGACACTACGCATTAATGAATGCACTTCTTTGGTGTCTCTGCCACCAAATCTTGCAAGACTTGCCAAGTTGAGAGATCTCACATTATTTTCTTGCTCAAGTCTGAGAAATTTGCCTGATGTTATGGATGGCCTCACTGGTCTTCAGGAACTATGTGTTCGGCAGTGCCCTGGGGTAGAGACACTGCCACAGAGTCTTCTTCAGCGACTGCCAAACCTCAGGAAGCTAATGACACTAGGAAGCCACAAGTTAGATAAGCGATGCAGAAGAGGAGGGGAGTACTGGGAGTATGTCTCTAATATTCCATGTCTGAACAGAGACTTCATAGAAGAAAGACCCTGTTAA More
Protein seq		MAESLLLPVVRGVVGKAAGALVQSVTRMCGVDGDRHKLERQLLAVQCKLSDAEAKSETSPAVKRWMKDLKAVAYEADDVLDDFHYEALRRDAQIGDSTTDKVLGYFTPHSPLLFRVAMSKKLNSVLKKINELVEEMNKFGLVERADQATVHVIHPQTHSGLDSLMEIVGRDDDKEMVVNLLLEQRSKRMVEVLSIVGMGGLGKTTLAKMVYNDTRVQQRFELPMWLCVSDDFNVVSLVRSIIELATRGNCTLPDRIELLRSRLHEVVGRKRYLLVLDDVWNEEEHKWEELRPLLHSAGAPGSVVLVTTRSQRVASIMGTVPAHTLSYLNHDDSWELFRKKAFSKEEEQQPEFAEIGNRIVKKCKGLPLALKTMGGLMSSKKRIQEWEAIAGSKSWEDVGTTNEILSILKLSYRHLPLEMKQCFAFCAIFPKDYQMERDKLVQLWIANNFIQEEGMMDLEERGQFVFNELVWRSFFQDVKVESFHVGIKQTYKSITCYMHDLMHDLAKSVTEECVDAQDLNQQKASMKDVRHLMSSAKLQENSELFKHVGPLHTLLSPYWSKSSPLPRNIKRLNLTSLRALHNDKLNVSPKALASITHLRYLDLSHSSKLEHLPDSICMLYSLQALRLNGCLKLQHLPEGMRFMSKLRHLYLIGCHSLKRMPPRIGQLKNLRTLTTFVVDTKDGCGLEELKDLHHLGGRLELFNLKAIQSGSNAREANLHIQENVTELLLHWCHDIFEYSDHDFDLDVVDNKKEIVEFSLPPSRLETLQVWGSGHIEMSSWMKNPAIFLCLKELHMSECWRCKDLPPLWQSVSLESLSLSRLDNLTTLSSGIDMAVPGCNGSLEIFPKLKKMHLHYLPNLEKWMDNEVTSVMFPELKELKIYNCPKLVNIPKAPILRELDIFQCRIALNSLSHLAALSQLNYVGDWSVSKDLQVIPIRSWPSLVTLALASLGNSLLPDEQQTTMPPLESIQKLSIWYSSCFFSPNSSNWPFGFWDCFAFVEELSIVLCDDLVHWPVKELCGLNSLRCVRFSYCKNLTSSSSEESLFPSGLEKLYIEFCNNLLEIPKLPASLETLRINECTSLVSLPPNLARLAKLRDLTLFSCSSLRNLPDVMDGLTGLQELCVRQCPGVETLPQSLLQRLPNLRKLMTLGSHKLDKRCRRGGEYWEYVSNIPCLNRDFIEERPC
Function		Putative disease resistance protein RGA1 [UniProtKB/Swiss-Prot:Q7XA42]

Transcripts

Gene	Transcript	Chromosome	Start	End	Strand	Source
Os08g0543100	Os08t0543100-00	Chr08	27181693	27185268	-	irgsp1_rep
CDS seq	ATGGCAGAATCGCTGCTCCTCCCGGTGGTGCGCGGGGTGGTCGGCAAGGCGGCCGGCGCGCTCGTCCAGAGCGTCACTCGCATGTGCGGCGTCGACGGCGATCGCCACAAGCTGGAGCGCCAGCTTCTGGCCGTCCAGTGCAAGCTGTCCGACGCCGAGGCGAAGAGCGAGACCAGCCCCGCCGTGAAGAGGTGGATGAAGGACCTCAAGGCCGTCGCGTACGAGGCCGACGACGTCCTCGACGACTTCCACTACGAGGCACTGCGCCGCGACGCCCAGATCGGCGACTCCACCACCGACAAGGTACTCGGCTACTTCACGCCGCACAGCCCCCTCCTGTTCCGTGTTGCCATGAGCAAGAAGCTGAACAGTGTCCTCAAGAAGATCAACGAGCTGGTTGAAGAGATGAACAAGTTTGGCCTAGTGGAGCGTGCAGATCAGGCAACAGTACATGTGATCCATCCTCAGACGCACTCCGGCCTCGATAGCTTGATGGAGATCGTTGGCAGAGACGACGACAAGGAGATGGTGGTGAATTTGTTACTTGAGCAGCGATCCAAGCGGATGGTTGAGGTGCTATCAATCGTAGGGATGGGGGGATTGGGCAAGACCACACTTGCGAAGATGGTGTACAACGACACAAGGGTTCAACAACGCTTTGAGTTGCCCATGTGGCTCTGTGTCTCAGATGATTTCAATGTTGTTTCTCTAGTCAGATCCATTATTGAATTGGCTACCAGGGGAAATTGCACCTTGCCAGACAGAATCGAACTATTGCGCAGCCGTCTACATGAGGTGGTAGGCCGCAAAAGGTATCTACTTGTTCTTGATGATGTTTGGAATGAGGAGGAACATAAATGGGAGGAGCTGAGGCCATTGCTGCATTCTGCTGGTGCTCCAGGAAGTGTAGTACTTGTCACAACTCGGAGCCAGCGGGTAGCATCCATAATGGGCACAGTTCCTGCTCACACGCTATCATACCTAAACCATGATGATTCATGGGAATTATTCCGGAAGAAAGCATTCAGTAAAGAAGAGGAGCAGCAGCCAGAGTTTGCAGAGATTGGCAATCGTATTGTCAAGAAGTGCAAAGGGTTACCTCTTGCTCTGAAGACAATGGGAGGCCTTATGAGTTCCAAGAAGCGAATCCAGGAATGGGAAGCTATTGCAGGAAGCAAGAGTTGGGAGGATGTTGGGACTACAAATGAGATCCTATCCATACTAAAACTGAGCTATAGGCACTTACCACTTGAAATGAAGCAATGTTTTGCCTTTTGCGCAATCTTCCCAAAGGACTACCAGATGGAGAGGGACAAGTTGGTCCAGCTCTGGATAGCGAATAATTTCATCCAAGAGGAGGGGATGATGGATTTGGAAGAGAGAGGACAGTTTGTTTTCAATGAGCTAGTGTGGAGGTCCTTCTTCCAAGATGTAAAGGTAGAAAGTTTTCATGTCGGGATTAAACAGACTTACAAGTCAATTACATGCTACATGCATGATCTAATGCATGATCTAGCAAAATCTGTCACAGAGGAATGTGTTGATGCGCAAGACCTGAACCAGCAAAAAGCCTCGATGAAAGATGTCCGCCATCTGATGTCAAGTGCCAAGTTGCAAGAGAACAGTGAATTATTTAAACATGTGGGACCTCTTCACACATTATTGTCACCATATTGGTCAAAATCATCACCACTACCCAGAAATATCAAGAGATTAAACTTGACGTCTTTACGAGCATTGCATAATGATAAATTGAATGTTTCTCCAAAGGCATTAGCAAGTATAACACACTTACGATACCTTGATCTTTCTCATTCTAGTAAGCTAGAACATTTACCTGATTCAATATGTATGTTATACAGCTTGCAAGCTTTGAGGTTAAATGGTTGCTTGAAACTTCAGCATTTACCAGAGGGTATGAGATTTATGAGCAAGCTCAGGCACCTTTATCTTATTGGTTGTCATAGCTTGAAACGCATGCCACCAAGAATTGGTCAGCTAAAGAACCTCCGGACTCTTACCACATTTGTTGTGGATACCAAAGATGGATGTGGGCTTGAAGAACTGAAAGACTTGCATCATCTAGGTGGCCGACTAGAACTGTTTAATCTGAAAGCTATACAAAGTGGGTCAAATGCAAGAGAAGCCAATCTCCATATCCAAGAAAATGTAACTGAGTTGTTGTTGCACTGGTGTCATGATATATTCGAGTACAGTGACCATGACTTTGATCTCGATGTTGTTGACAACAAAAAGGAGATCGTAGAGTTCTCTTTACCTCCTAGCAGACTTGAAACATTGCAGGTATGGGGCTCTGGTCATATTGAAATGTCATCATGGATGAAAAACCCCGCAATTTTCCTATGCCTAAAAGAACTCCACATGTCTGAGTGCTGGAGATGTAAGGATCTACCACCGTTATGGCAGTCTGTCTCTCTTGAGTCCCTGTCTTTATCCCGTTTGGATAATTTGACCACATTATCTAGTGGCATTGACATGGCTGTTCCAGGATGCAATGGTTCCCTGGAAATTTTTCCAAAGCTGAAGAAGATGCATTTACATTACTTACCTAACTTGGAGAAATGGATGGACAATGAAGTAACATCGGTGATGTTCCCTGAGCTCAAAGAATTAAAAATTTACAATTGTCCAAAGCTAGTGAATATTCCAAAAGCTCCTATCCTACGAGAGCTGGATATATTCCAGTGCAGAATTGCACTGAACTCACTCAGCCATCTTGCAGCACTTTCCCAACTCAACTATGTTGGTGACTGGAGTGTTTCTAAGGATTTGCAGGTAATACCAATACGCTCCTGGCCATCTCTTGTGACATTAGCGCTAGCCTCTTTAGGGAACTCGCTTCTCCCAGATGAGCAGCAGACGACCATGCCCCCTCTGGAATCAATTCAGAAGCTGAGCATTTGGTATTCTAGTTGTTTCTTCTCACCTAATTCGTCAAACTGGCCCTTTGGTTTCTGGGATTGCTTTGCATTTGTGGAAGAATTGTCGATAGTATTATGCGACGATCTTGTCCATTGGCCTGTGAAGGAGCTCTGTGGCTTGAATTCCCTTCGTTGTGTAAGATTTAGTTATTGCAAGAATCTGACCAGTTCATCATCAGAAGAATCCTTATTCCCGTCTGGTCTGGAAAAGTTGTACATAGAATTTTGCAATAACTTATTAGAGATTCCCAAGCTCCCTGCTTCACTGGAGACACTACGCATTAATGAATGCACTTCTTTGGTGTCTCTGCCACCAAATCTTGCAAGACTTGCCAAGTTGAGAGATCTCACATTATTTTCTTGCTCAAGTCTGAGAAATTTGCCTGATGTTATGGATGGCCTCACTGGTCTTCAGGAACTATGTGTTCGGCAGTGCCCTGGGGTAGAGACACTGCCACAGAGTCTTCTTCAGCGACTGCCAAACCTCAGGAAGCTAATGACACTAGGAAGCCACAAGTTAGATAAGCGATGCAGAAGAGGAGGGGAGTACTGGGAGTATGTCTCTAATATTCCATGTCTGAACAGAGACTTCATAGAAGAAAGACCCTGTTAA More
Protein seq	MAESLLLPVVRGVVGKAAGALVQSVTRMCGVDGDRHKLERQLLAVQCKLSDAEAKSETSPAVKRWMKDLKAVAYEADDVLDDFHYEALRRDAQIGDSTTDKVLGYFTPHSPLLFRVAMSKKLNSVLKKINELVEEMNKFGLVERADQATVHVIHPQTHSGLDSLMEIVGRDDDKEMVVNLLLEQRSKRMVEVLSIVGMGGLGKTTLAKMVYNDTRVQQRFELPMWLCVSDDFNVVSLVRSIIELATRGNCTLPDRIELLRSRLHEVVGRKRYLLVLDDVWNEEEHKWEELRPLLHSAGAPGSVVLVTTRSQRVASIMGTVPAHTLSYLNHDDSWELFRKKAFSKEEEQQPEFAEIGNRIVKKCKGLPLALKTMGGLMSSKKRIQEWEAIAGSKSWEDVGTTNEILSILKLSYRHLPLEMKQCFAFCAIFPKDYQMERDKLVQLWIANNFIQEEGMMDLEERGQFVFNELVWRSFFQDVKVESFHVGIKQTYKSITCYMHDLMHDLAKSVTEECVDAQDLNQQKASMKDVRHLMSSAKLQENSELFKHVGPLHTLLSPYWSKSSPLPRNIKRLNLTSLRALHNDKLNVSPKALASITHLRYLDLSHSSKLEHLPDSICMLYSLQALRLNGCLKLQHLPEGMRFMSKLRHLYLIGCHSLKRMPPRIGQLKNLRTLTTFVVDTKDGCGLEELKDLHHLGGRLELFNLKAIQSGSNAREANLHIQENVTELLLHWCHDIFEYSDHDFDLDVVDNKKEIVEFSLPPSRLETLQVWGSGHIEMSSWMKNPAIFLCLKELHMSECWRCKDLPPLWQSVSLESLSLSRLDNLTTLSSGIDMAVPGCNGSLEIFPKLKKMHLHYLPNLEKWMDNEVTSVMFPELKELKIYNCPKLVNIPKAPILRELDIFQCRIALNSLSHLAALSQLNYVGDWSVSKDLQVIPIRSWPSLVTLALASLGNSLLPDEQQTTMPPLESIQKLSIWYSSCFFSPNSSNWPFGFWDCFAFVEELSIVLCDDLVHWPVKELCGLNSLRCVRFSYCKNLTSSSSEESLFPSGLEKLYIEFCNNLLEIPKLPASLETLRINECTSLVSLPPNLARLAKLRDLTLFSCSSLRNLPDVMDGLTGLQELCVRQCPGVETLPQSLLQRLPNLRKLMTLGSHKLDKRCRRGGEYWEYVSNIPCLNRDFIEERPC More

Event Type

Chromosome

Start

End

Strand

Alternative mRNAs

Total mRNAs

Source

Expression

	Leaf	Root	Panicle
FPKM	None	None	None

Homologues

Genome & Annotation	Homologs	Type	Expression(FPKM)
Genome & Annotation	Homologs	Type	Leaf	Root	Panicle
Nipponbare \| IRGSP 1.0 \| Gramene(+IsoSeq)	OsNip_08g0543100	RBH	0.750775	0.547373	0.985731
Nipponbare \| IRGSP 1.0 \| MSU	LOC_Os08g43010	RBH	0.455033	0.329954	0.230095
Nipponbare \| IRGSP 1.0 \| RAP-db	Os09g0517200	SBH	None	None	None
Azucena \| AzucenaRS1 \| Gramene(+IsoSeq)	OsAzu_08g0024090	RBH	0.178070	0.702764	0.339694
KETAN NANGKA \| Os128077RS1 \| Gramene(+IsoSeq)	OsKeNa_08g0023890	RBH	0.261677	0.864010	0.680425
CHAO MEO \| Os132278RS1 \| Gramene(+IsoSeq)	OsCMeo_08g0023890	RBH	0.0	0.0	0.769757
ARC 10497 \| Os117425RS1 \| Gramene(+IsoSeq)	OsARC_08g0024230	RBH	0.031484	0.016152	None
PR 106 \| Os127742RS1 \| Gramene(+IsoSeq)	OsPr106_08g0023880	RBH	0.560255	0.0	3.501760
Minghui 63 \| MH63RS3 \| HZAU	OsMH63_08G0432300	RBH	2.140468	7.545188	2.8739475
IR 64 \| OsIR64RS1 \| Gramene(+IsoSeq)	OsIR64_08g0023720	SBH	0.078031	0.019554	0.104711
Zhenshan 97 \| ZS97RS3 \| HZAU	OsZS97_08G0451800	RBH	0.9933615	7.043319	0.5838455
LIMA \| Os127564RS1 \| Gramene(+IsoSeq)	OsLima_08g0023110	RBH	0.182611	0.186662	None
KHAO YAI GUANG \| Os127518RS1 \| Gramene(+IsoSeq)	OsKYG_08g0023480	RBH	0.036678	2.196615	None
GOBOL SAIL \| Os132424RS1 \| Gramene(+IsoSeq)	OsGoSa_08g0023290	RBH	1.179987	2.777411	None
LIU XU \| Os125827RS1 \| Gramene(+IsoSeq)	OsLiXu_08g0024140	RBH	0.000000	0.000000	0.106322
LARHA MUGAD \| Os125619RS1 \| Gramene(+IsoSeq)	OsLaMu_08g0023370	RBH	0.047404	1.107783	None
N22 \| OsN22RS2 \| Gramene(+IsoSeq)	OsN22_08G023570	RBH	0.0	0.000000	0.663672
NATEL BORO \| Os127652RS1 \| Gramene(+IsoSeq)	OsNaBo_08g0023740	RBH	0.0	6.806577	0.831009

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National Key Laboratory of Crop Genetic Improvement

Huazhong Agricultural University

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