Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| Os08g0519700 | OGI:08073960 | 16/16 | Nipponbare | IRGSP 1.0 | RAP-db | Chr08:25829944-25834691 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | CATTAAATTGGAGGCTTGGAGCTAAGTCCAAGACTTGTTTTTTTCTTTTGGGGGCACTATGAGACAAGAGCTGTTACTTATTATTACCCATAATCATCACCTGAGCTTTGTCTTTGGCCTGTAGTTTTTACATCACAAGATTATTATTTTTTACTTCTGCCTGATTCCTTGCTTATACAGCAGAAGAGTGTCTAGCATGGTCCATCTGTTCTGAAATTTAGAATCCTGCACTTATTTTACTGTTAAATCTTCAGAACTAAATCATTCGTTTCTTCTGTAACTTGAAGACAGTAAAGATGATTCTGTCTGTACTGTTTTACCCTGAAAAAAAGTGTGACTTTGGAAGTCCAATGCAGTACAACCCCTGGTGTGTGTTCATAGCACTAGCCTCACACACTCACACTCCATACTGTGTACTGAACTGAATTTAGTTTAGTTGTCAAGTCCGTTCACTTACTGCAAGTTGAAGGTAGTAGGGCCAAGGATTAATATTCCTCACTCTCTTGCCTTCTCAGCCCTCTTTTGGGAGAAAAAGAATGCTGGTGCTACCGAACAAATGTGTAGTGTAGCGTATTTGCAGTGGGGTATTTCACCTGCAAAGGAGCATCTTTCTGTAGCCTTGTAGCTTTCACTCCCCTTTCTTTGTAAAGATATTTCAGGTTTCCAGATAAATAGATGCATCTCATGCTCTGTTTGGTTTTCAGTAGCTTGCAGTTGTTGCCTGTGGCTTCTGAGTGGCCAGTTTTTGTGGTTGTATTCAACCAGTTTCAACATTCATGACTGCTGTTGCACTTCATTAGCTTATGCCTAAGCTCCCTTTTGCTGCATGATTTGATTGCATATAATCATTCTGCATTGTTTCTGCAGCTTCTGAACTTTGGGAAACTTGTCAGACAGCAGGGTTGATTCAGGTCATCTTCTTGCTTGGAATGTGCTCATCACCAAATGTCGATTCTTGTACAGTATTAGGTAATTTCTGCAATGTTACATGACTCAAATACCTGGTTTCTTCAAGTCAGAACTGACCTGTTACATTTTCCTTCTCCAATGTTTTTCCACATGTTGAACTCAGAAGTTCTGATCCAAGCATGACGGGTTCTTGAAAGTTGAAACTACACAAAGGCTTTGGAGACATGGGATGTGCTGCTTCCAGGTTAGAAGATGAGGAGGCTGTCAAGATGTGCCGGGACAGGAGGGACTTCATCAAGCAGGCGCTGGAGCAGCGGAACCGCTTCGCGTCGTCTCACTTTGCCTACATTGAGTCCTTGAGGCGCGTCTCGATGGCGCTCCAGTGGTTCGTTGCTGGGGATGATCACCATGAGCTCATATTTGACCCCTTCATTTCTCCCTTGAAGCAACAGAAGCCAGAGCTGCTTGGCCTCCCTTATGGTTCATATGAGAAGAGGACAATTCATGTCTCAAAGTACCTGAGGTCAGGACCAAACCCATCGGTATCAGTTGAAGAGCAACCGAGACCCGTGGAAACAATCCGTATTGAGTCACATTACCCCACAGATAACTTTGGTGGCATGGACAGGTTCTTCGCAGCGCAATCCTCGCCAATGAGGCCATCTTCTTACTACACACCACCTTATGACAGGCCAAATTATCCACCTCCATCACCCCAGGAGCCAGTGAGGAACTCTTATTACATGTCCTATGACAGGCCAAGCTATCCAGCTGCATCACCCCAGGAGCCAACAAGGACTTCTTATTACGCGTCGTATGATAGGCCAAGCTACCCACCTCCGTCGCCTCAGGAGCAGGAATCATCACAGTGGGACTTCTTCTGGAACCCATTCTCATCGCTGGACAGCTTTGCGTATCCGCGACCTCGGAGTAGCTATGACAATGTGGTCACCGACGATGAATTGGCACGATTACAGCGTGTAAGAGAGGAGGAAGGAATCCCGGAACTTGAAGAAGAAGATGATGAGTGTCAACAACATGAACAGGTGCACCAGAAAGAGGAACAAGTGGATGACGATGACAATGATGATTCTGATGATGACGACGATGATGACGATGACGATGACGATGATGGCGACGATGAATGTGATCATTCAGATGAGAGATGTATGCCTTCTAATGGGGGTGCTTGCCCTGTGAAGACTGAGGTCAATGGCAAGCAGGAAACAAAGGGCTTTGAATCCAAAGGAGTTCAGTGTGAACCGCGTAACAAAGTAGAACTTGAGATCAAGGCGCATAAGAAAGAACTGATGAGGAACAAAGTAGCAAATGCAGAAGAAACACCTGGTTTCACAGTGTATCTGAACCGCAGACCAGCAAGTCTGGCTGAAGCCATGAAGGATATTGACAGTCAGTTCTTGGGGATCTGCGATGCTGCAAAGGAAATCTCAGTGATGTTGGAGGCAAGTAGAGCTCAATACTCAACCTCAAACGATCTTTCTGGTACTAATTTTACAAACCAATACTGGAATTACTTAAAACTATTTCAGATCTAACTCACTCGACTTACTAATGAATTTAATAATGCAGCAAAGATGCTAAACCCAGTCGCATTATTGCGGTCTGCATCATCCCGGTCATCGTCTTCCCGCTTCCTTCTTGCTCCCACAAGCTCAATAGAGGACCTCTATGACAATGAGACAAACAGCTGTTACTCTGAAGAATCCTGCAGTACAATGTCTGGAAGTCATCACTCCACTCTAGATAGACTGTATACATGGGAGAAGAAATTATACAAAGAAGTAAAGGTACAATCTCCACCAGGAACTAATACCAGAAGATCAATAGAAGTGAGTAGTGGGAATCATGCTTTGTTTTTGTCACTTGTAGGCAGGCGAACGATTAAGAATTGACTATGAGAAAAGGCTGAACCATTTGAGGAACCAGGATGTGAAAGGCGACGAGCCTTCCTCCGTCGATAAGACCCGTGCAGCATTGAGAAGTTTACATACTCGGATGAAGGTGTCAATACACACAGTTCAGTCAATATCAGCGAGGATTGAAGTTCTAAGAGACGAGGAGATGCAACCTCAGCTTATGGAGTTGATCCGAGGGTACGTTTCTGTAGTTTATTGTTCAGTTTTGGTGTCCTGCATAGTGAGAGTAGAAACACAATAATGCGCATATATTAACTATTGAAATGGGATCCATAATTTGATCAACAGAGTAAATAACCAGTTACAATTGTTTCAGCTATTAGGATCTCAGATATAGGATGCGTAGGTAATGTGATCATTGTGATGAAATAGGCATGCAGAAGTAGGTATGCACAACTGGAGGTGTTCTGTTCCTGTAAATGAATGTAAAGCAATCTACTATTTACAAGAGAGAGGGGGGGGGGGGACTGCATACAGATAAACTCAACAAGAACATGTTTGCAACAAATTCTTCAGTTATGTAACACAACAAATTCTTCAGTTATGTAACACAACACAAGTTGAATTCGAAAGAGTTACTTTTTTTTTCCCATCAGCATGCTATTAAATCGTACAAACATAATTAAACAGAAACATAAACAGATGCAGCAAAAAAGGCTGACATTCTTAATCATACTGTCTTAGACGGGTACAAAAGCCATCTTTTACCATCATCACTGTGAGCAGGAATTATAGCCCTGCTCTTTTCATTGTTTTAGCTTAACCAGATTGTGTAGGATCCATCAAAAGTTTGAATTTGATCAATTCAACTCTCAGAAATGGCAAATGCAGCGACTTATAACAAAATGAAAAGAAGATATTTTCCCCCCTTGTTGCATCACTGTGATCTTGAACATTGGACATGTCTTGGCATTACGCAGGTTGTCACGGATGTGGCGCACCATGGCCGAACGCCACAAGGCTCAGAAGCGCACCATCGACGACGCCAAGCTCCTCTTCCTCCAGCGCCACCCCACGGCCGCCGCTGCCACCGCCACCGCCATCGCCCTGAGCGCCCCGGACGCCGCGACGCCGCCCCCGGCCGCCGTGGCGCTCGAGTGCGAGATCCGGGCGTGGCGCGGCGCACTCGAGACGTGGCTGTCGGCGCAGCGCGCCTACGCGCGCGCCCTCGCCGCGTGGGCGCGCCGCTGCCTCGGCATCGGCGGCGCCGGCGCCGGCGGCACCGCCGCCGCCGCGCTGCCGCTGGCGTTCGCGGTGTGCATGGAGTGGGGGCACGCGGTCGACGCGGCGTCGGAGGCGCGGGTGATGGACGGGCTGGACTTCTTCGTCGCCGGCGTCGGGTCGGTGTGCTCGGGCGTGGCCACTGGCATGGAGGGCATGGCCGGGCGCGTGCTCTGCGCCGGCATGGCCGCGGTGACCGGCGCCATGGCCGAGTTCGCCGACGCGTCGGCGGACGGCTACGACGCGCTGGTGTCGGCGGTGGCCGCCGGCGCGCCGGGACGCCGGAAAGAGGAACCGACATGTGGGCCCCAGGTGTCATAGAATGGCTCAAAAAAAATTTGCCTAAACTTGAGTTGGATTCTGCAGTTGCCTAAAAAATTGCCTAGTCTTAGTCCTGTAATGAAGAATGATTTGCATCGCTGATTTACTGTAGCTGGTGATTATTGACTTGAGGAGAAGTATTAGTTAGAGGGTTTAATTACCATGGTGATTATGTTCTTGGGTGTGATTCTTCTGTCAGTGAGAGGAAACTTCTGATATTGTTTTGTAAGTAAGTATGAGGTTAACAGGTAAAAAGGGTGTACTGGTTAATGTTTTTCCTTGAAGAGGGGAGTGAGTACTGTTTTAGTTGATTTTGTTAGGTGCTGGTCTGTTTTAGGTTGAATGAAATGTAAATTACTC
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| CDS seq | ATGGGATGTGCTGCTTCCAGGTTAGAAGATGAGGAGGCTGTCAAGATGTGCCGGGACAGGAGGGACTTCATCAAGCAGGCGCTGGAGCAGCGGAACCGCTTCGCGTCGTCTCACTTTGCCTACATTGAGTCCTTGAGGCGCGTCTCGATGGCGCTCCAGTGGTTCGTTGCTGGGGATGATCACCATGAGCTCATATTTGACCCCTTCATTTCTCCCTTGAAGCAACAGAAGCCAGAGCTGCTTGGCCTCCCTTATGGTTCATATGAGAAGAGGACAATTCATGTCTCAAAGTACCTGAGGTCAGGACCAAACCCATCGGTATCAGTTGAAGAGCAACCGAGACCCGTGGAAACAATCCGTATTGAGTCACATTACCCCACAGATAACTTTGGTGGCATGGACAGGTTCTTCGCAGCGCAATCCTCGCCAATGAGGCCATCTTCTTACTACACACCACCTTATGACAGGCCAAATTATCCACCTCCATCACCCCAGGAGCCAGTGAGGAACTCTTATTACATGTCCTATGACAGGCCAAGCTATCCAGCTGCATCACCCCAGGAGCCAACAAGGACTTCTTATTACGCGTCGTATGATAGGCCAAGCTACCCACCTCCGTCGCCTCAGGAGCAGGAATCATCACAGTGGGACTTCTTCTGGAACCCATTCTCATCGCTGGACAGCTTTGCGTATCCGCGACCTCGGAGTAGCTATGACAATGTGGTCACCGACGATGAATTGGCACGATTACAGCGTGTAAGAGAGGAGGAAGGAATCCCGGAACTTGAAGAAGAAGATGATGAGTGTCAACAACATGAACAGGTGCACCAGAAAGAGGAACAAGTGGATGACGATGACAATGATGATTCTGATGATGACGACGATGATGACGATGACGATGACGATGATGGCGACGATGAATGTGATCATTCAGATGAGAGATGTATGCCTTCTAATGGGGGTGCTTGCCCTGTGAAGACTGAGGTCAATGGCAAGCAGGAAACAAAGGGCTTTGAATCCAAAGGAGTTCAGTGTGAACCGCGTAACAAAGTAGAACTTGAGATCAAGGCGCATAAGAAAGAACTGATGAGGAACAAAGTAGCAAATGCAGAAGAAACACCTGGTTTCACAGTGTATCTGAACCGCAGACCAGCAAGTCTGGCTGAAGCCATGAAGGATATTGACAGTC
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| Protein seq | MGCAASRLEDEEAVKMCRDRRDFIKQALEQRNRFASSHFAYIESLRRVSMALQWFVAGDDHHELIFDPFISPLKQQKPELLGLPYGSYEKRTIHVSKYLRSGPNPSVSVEEQPRPVETIRIESHYPTDNFGGMDRFFAAQSSPMRPSSYYTPPYDRPNYPPPSPQEPVRNSYYMSYDRPSYPAASPQEPTRTSYYASYDRPSYPPPSPQEQESSQWDFFWNPFSSLDSFAYPRPRSSYDNVVTDDELARLQRVREEEGIPELEEEDDECQQHEQVHQKEEQVDDDDNDDSDDDDDDDDDDDDDGDDECDHSDERCMPSNGGACPVKTEVNGKQETKGFESKGVQCEPRNKVELEIKAHKKELMRNKVANAEETPGFTVYLNRRPASLAEAMKDIDS |
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| Function | - | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| Os08g0519700 | Os08t0519700-01 | Chr08 | 25829944 | 25834691 | + | irgsp1_rep | ||
| CDS seq | ATGGGATGTGCTGCTTCCAGGTTAGAAGATGAGGAGGCTGTCAAGATGTGCCGGGACAGGAGGGACTTCATCAAGCAGGCGCTGGAGCAGCGGAACCGCTTCGCGTCGTCTCACTTTGCCTACATTGAGTCCTTGAGGCGCGTCTCGATGGCGCTCCAGTGGTTCGTTGCTGGGGATGATCACCATGAGCTCATATTTGACCCCTTCATTTCTCCCTTGAAGCAACAGAAGCCAGAGCTGCTTGGCCTCCCTTATGGTTCATATGAGAAGAGGACAATTCATGTCTCAAAGTACCTGAGGTCAGGACCAAACCCATCGGTATCAGTTGAAGAGCAACCGAGACCCGTGGAAACAATCCGTATTGAGTCACATTACCCCACAGATAACTTTGGTGGCATGGACAGGTTCTTCGCAGCGCAATCCTCGCCAATGAGGCCATCTTCTTACTACACACCACCTTATGACAGGCCAAATTATCCACCTCCATCACCCCAGGAGCCAGTGAGGAACTCTTATTACATGTCCTATGACAGGCCAAGCTATCCAGCTGCAGTTGCCTAA
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| Protein seq | MGCAASRLEDEEAVKMCRDRRDFIKQALEQRNRFASSHFAYIESLRRVSMALQWFVAGDDHHELIFDPFISPLKQQKPELLGLPYGSYEKRTIHVSKYLRSGPNPSVSVEEQPRPVETIRIESHYPTDNFGGMDRFFAAQSSPMRPSSYYTPPYDRPNYPPPSPQEPVRNSYYMSYDRPSYPAAVA |
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| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| Os08g0519700 | Os08t0519700-02 | Chr08 | 25830688 | 25832265 | + | irgsp1_rep | ||
| CDS seq | ATGGGATGTGCTGCTTCCAGGTTAGAAGATGAGGAGGCTGTCAAGATGTGCCGGGACAGGAGGGACTTCATCAAGCAGGCGCTGGAGCAGCGGAACCGCTTCGCGTCGTCTCACTTTGCCTACATTGAGTCCTTGAGGCGCGTCTCGATGGCGCTCCAGTGGTTCGTTGCTGGGGATGATCACCATGAGCTCATATTTGACCCCTTCATTTCTCCCTTGAAGCAACAGAAGCCAGAGCTGCTTGGCCTCCCTTATGGTTCATATGAGAAGAGGACAATTCATGTCTCAAAGTACCTGAGGTCAGGACCAAACCCATCGGTATCAGTTGAAGAGCAACCGAGACCCGTGGAAACAATCCGTATTGAGTCACATTACCCCACAGATAACTTTGGTGGCATGGACAGGTTCTTCGCAGCGCAATCCTCGCCAATGAGGCCATCTTCTTACTACACACCACCTTATGACAGGCCAAATTATCCACCTCCATCACCCCAGGAGCCAGTGAGGAACTCTTATTACATGTCCTATGACAGGCCAAGCTATCCAGCTGCATCACCCCAGGAGCCAACAAGGACTTCTTATTACGCGTCGTATGATAGGCCAAGCTACCCACCTCCGTCGCCTCAGGAGCAGGAATCATCACAGTGGGACTTCTTCTGGAACCCATTCTCATCGCTGGACAGCTTTGCGTATCCGCGACCTCGGAGTAGCTATGACAATGTGGTCACCGACGATGAATTGGCACGATTACAGCGTGTAAGAGAGGAGGAAGGAATCCCGGAACTTGAAGAAGAAGATGATGAGTGTCAACAACATGAACAGGTGCACCAGAAAGAGGAACAAGTGGATGACGATGACAATGATGATTCTGATGATGACGACGATGATGACGATGACGATGACGATGATGGCGACGATGAATGTGATCATTCAGATGAGAGATGTATGCCTTCTAATGGGGGTGCTTGCCCTGTGAAGACTGAGGTCAATGGCAAGCAGGAAACAAAGGGCTTTGAATCCAAAGGAGTTCAGTGTGAACCGCGTAACAAAGTAGAACTTGAGATCAAGGCGCATAAGAAAGAACTGATGAGGAACAAAGTAGCAAATGCAGAAGAAACACCTGGTTTCACAGTGTATCTGAACCGCAGACCAGCAAGTCTGGCTGAAGCCATGAAGGATATTGACAGTC
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| Protein seq | MGCAASRLEDEEAVKMCRDRRDFIKQALEQRNRFASSHFAYIESLRRVSMALQWFVAGDDHHELIFDPFISPLKQQKPELLGLPYGSYEKRTIHVSKYLRSGPNPSVSVEEQPRPVETIRIESHYPTDNFGGMDRFFAAQSSPMRPSSYYTPPYDRPNYPPPSPQEPVRNSYYMSYDRPSYPAASPQEPTRTSYYASYDRPSYPPPSPQEQESSQWDFFWNPFSSLDSFAYPRPRSSYDNVVTDDELARLQRVREEEGIPELEEEDDECQQHEQVHQKEEQVDDDDNDDSDDDDDDDDDDDDDGDDECDHSDERCMPSNGGACPVKTEVNGKQETKGFESKGVQCEPRNKVELEIKAHKKELMRNKVANAEETPGFTVYLNRRPASLAEAMKDIDS
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | None | None | None |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_08g0519700 | RBH | 0.496015 | 0.508676 | 5.705595 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os08g40830 | RBH | 3.320730 | 4.170201 | 2.645631 |
| Nipponbare | IRGSP 1.0 | RAP-db | NA | NA | NA | NA | NA |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_08g0022390 | RBH | 1.163394 | 12.724782 | 13.119102 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_08g0022280 | RBH | 0.781428 | 2.205020 | 4.987717 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_08g0022170 | SBH | 2.317076 | 8.327062 | 20.155716 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_08g0022300 | SBH | 0.324554 | 0.258799 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_08g0022180 | SBH | 13.726083 | 14.991720 | 36.087032 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_08G0411900 | RBH | 8.278118 | 34.354595 | 28.997968 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_08g0022070 | RBH | 0.711734 | 1.522435 | 3.161579 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_08G0433300 | RBH | 8.1810795 | 65.9340705 | 28.81919 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_08g0021420 | RBH | 0.348181 | 0.832768 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_08g0021720 | SBH | 0.989708 | 13.037201 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_08g0021560 | SBH | 7.852119 | 60.897316 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_08g0022370 | SBH | 1.845961 | 1.326479 | 2.509395 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_08g0021740 | SBH | 0.489452 | 5.190138 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_08G021910 | SBH | 1.570742 | 3.675454 | 5.815194 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_08g0022070 | RBH | 3.910696 | 35.613064 | 18.483355 |
