Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| Os08g0249600 | OGI:08025900 | 16/16 | Nipponbare | IRGSP 1.0 | RAP-db | Chr08:9134106-9134700 | ||||||||
| Gene Symbol | DGK6, OsSTA208, OsDGK6 | ||||||||||
| DNA seq | GGATTTGGCATGCTACCAGTGCAGAATTATATTATTGTTCTGGAACAATCACCTCAATACCAAAGATGAACAATAATATCCATGGAAATTAGCTTAGTGGCAGCCTGACTACATATGCAGATTAGAACTAGCAGGGAGTTTTATTCCTTAATCACCTTGACATTCTTCATTCATGACCCCTGATGTATACTTCAAGATGAAAGAGATTTTTTTTTTTCATTTGGTGACTGAACTACTTCATGAATCAAGTACTGATGTTATTCTACAGATCTGTTAATTACTACCAATAGTCCTTGCACGAACAACTGCCATCTTTGAACAAATGGAATCGTGTTCGATCTCTAACAATAATTTCTCTACCATATACTTTAGATATAAGTTTGGTGACATGATGGCAATCATGGCAAACTCTGAGGTTCTTGACTATCCGAATGGGCATATCATCACTTGTGTTAATCAAAGCAAATGCAATTGCCATCTTCTCACTATGACGGCTGAGTGCATTTTCCTTCTCTTCTTCTTCAATATCAAGCAGAACTTCCTTCTTATCAGGCACATAACCTTCCTCCAACCTTATCCTACTATCAATCTCATC
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| CDS seq | GATGAGATTGATAGTAGGATAAGGTTGGAGGAAGGTTATGTGCCTGATAAGAAGGAAGTTCTGCTTGATATTGAAGAAGAAGAGAAGGAAAATGCACTCAGCCGTCATAGTGAGAAGATGGCAATTGCATTTGCTTTGATTAACACAAGTGATGATATGCCCATTCGGATAGTCAAGAACCTCAGAGTTTGCCATGATTGCCATCATGTCACCAAACTTATATCTAAAGTATATGGTAGAGAAATTATTGTTAGAGATCGAACACGATTCCATTTGTTCAAAGATGGCAGTTGTTCGTGCAAGGACTATTGGTAG |
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| Protein seq | DEIDSRIRLEEGYVPDKKEVLLDIEEEEKENALSRHSEKMAIAFALINTSDDMPIRIVKNLRVCHDCHHVTKLISKVYGREIIVRDRTRFHLFKDGSCSCKDYW |
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| Function | Pentatricopeptide repeat-containing protein At4g21065 [UniProtKB/Swiss-Prot:A8MQA3] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| Os08g0249600 | Os08t0249600-01 | Chr08 | 9134106 | 9134700 | - | irgsp1_rep | ||
| CDS seq | GATGAGATTGATAGTAGGATAAGGTTGGAGGAAGGTTATGTGCCTGATAAGAAGGAAGTTCTGCTTGATATTGAAGAAGAAGAGAAGGAAAATGCACTCAGCCGTCATAGTGAGAAGATGGCAATTGCATTTGCTTTGATTAACACAAGTGATGATATGCCCATTCGGATAGTCAAGAACCTCAGAGTTTGCCATGATTGCCATCATGTCACCAAACTTATATCTAAAGTATATGGTAGAGAAATTATTGTTAGAGATCGAACACGATTCCATTTGTTCAAAGATGGCAGTTGTTCGTGCAAGGACTATTGGTAG
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| Protein seq | DEIDSRIRLEEGYVPDKKEVLLDIEEEEKENALSRHSEKMAIAFALINTSDDMPIRIVKNLRVCHDCHHVTKLISKVYGREIIVRDRTRFHLFKDGSCSCKDYW |
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | None | None | None |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_08g0249600 | RBH | 0.000000 | 0.000000 | 1.006207 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os08g15090 | RBH | 0.265167 | 0.094558 | 0.415786 |
| Nipponbare | IRGSP 1.0 | RAP-db | NA | NA | NA | NA | NA |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_08g0002660 | SBH | 0.123268 | 0.000000 | 2.599314 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_08g0016970 | SBH | 0.0 | 0.0 | 1.421465 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_08g0002500 | SBH | 3.589752 | 0.000000 | 4.439034 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_08G0143600 | RBH | 0.7145095 | 5.7936115 | 1.48347 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_08g0002380 | SBH | 0.144769 | 0.252775 | 0.116521 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_08G0137400 | RBH | 1.5259355 | 7.5724695 | 7.3889455 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_08g0002520 | SBH | 0.053402 | 0.000000 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_08g0002530 | SBH | 0.171387 | 1.404463 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_08g0002350 | SBH | 1.156469 | 5.844526 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_08g0002560 | SBH | 0.452144 | 0.173635 | 0.338668 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_08g0002490 | SBH | 0.050057 | 0.000000 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_08g0002370 | SBH | 1.347770 | 1.189607 | 2.323493 |
