Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsLima_08g0002520 | OGI:08005590 | 16/16 | LIMA | Os127564RS1 | Gramene(+IsoSeq) | Chr08:2037940-2042676 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | ctctccaaactccaatccaccaaacccaccccaaaacccctcccaaacccgcaaacttcacctcaaattccccccatttttgaacaaatttcgtcataatcccgtcgaattcgagctcacttccccatccatggagctgcagctcgccgccctctgcaacccccgcctcctccactcctcccatgccttcctccccaaggccacctccaccgcctccacctcctcctcgtcggcggcggccggagaagccctcaagcctcgcccgcgtctcccgccaccgcagcagcagcagcagcagcccggcgtctcccaccaacaccaaacgcggcggaggagggagctgggcgccgccgcgctcgcctccctctgcgcggggatcgaggcgctggccgccgaggggcggcacgacgaggcgcgcgacgcgttccgcggggcgcgcgcgggcgccccgttcacgccgctgccggcgtccacgtacgacgcgctggtggcctccgccgccgcgctgcgggagcccgggttcgccgcggcggtgctgtggcacgtcgagagctccgggttcgagccaggccagcgcgcgtggaaccgcgtgctccggatgcagctcgcgtgcgggatgctcgccgaggcgcgacaggtgttcgacggaatgccttcaaggagcgaggccacctgggggaccatgatgggcgggctgatcgacgccgggcgcccacgcggcgcgctcgcgctgttccgggagctgtgggaggaggtgggcggggatgctgcgccgagggtggtggtggtggccgtccgtgcggtgacggcattggggtcagcgtgtgccgggcagcagctgcactgttgcgttgctaagacagggatgtacgaggaccagtacctgtcgtgcgcgctcatcgacatgtataacaagtgcgggcagcttgatgaggcgaggcgggtctttgacgggatgcctcagaagagtgtcgtggcgtggaactccatgctcgcgtcgtattcgcttcatggatgcagtgaggaggcattggatttgtatcacagcatgtgcgagggtggtgttgacatagaccagttcacgttctccacgatgctcagggttttttctaggctgggcttgctggagcatgcaaagcaagctcatgctggcctgattcagagagggttacctctggacattgtcgggaacacggcattggtggatctgtattgcaaatggggtcagatggaagatgcaaggaatgtttttgagaggatgcctatcaggaatttgatctcttggaatgctctaatagcaggctacggctatcatggcatggggcaaaaggctattgagatgttcgaggagctaatagctgagggaattgctccaaaccatgttacatttctagctgtactaaatgcatgcagattttctggctttgttgaggaagggaagagaattttccagttgatgactcaaaatcaaagaacaaaaccacgggcaatgcattatgcttgtattatcgagctttttggtcaacaagggagattagatgaagcctattcaatgataaggaaagcaccgttcatccctacagcgaacatgtggggtgccttgctcactgcttccaggatccataagaatttgcagcttgctagattagctgctgagcaactgttggcgatggaacctcagaaaacaaacaattatgttgtacttcttaacttgtatattaactctgggagacagactgaggcctcaaaggtagttgatactttgaagaggaggggtttatgtatacatgctgcttgtagctggattactgttaggaaaaaagatcacaggtttttctttaaagatagtctccatccacaaagttctgaaatctataggaagttagattcattattgaaggagataaaacaacttggttatgttgctgaggagaatgaattgctccctgatattcttcctgatgaacaaaagacgtcgaaagtttaccatagtgaaagacttgccgttgcttttggccttatcagcacatctttgtctactaccttgagggtcacccagtgccatcggttgtgccatgactgccacaaggtaatgaagtttgtaacacaagttaccaagagggaaattgtcataagggatggtagtaggtttcaccacttcaaactcgggacctgttcttgcggtgactactggtaactaggtactccagttaccactcctgacaatgtatatccaactgggtctcactcctgacaatgtattatccttgtattaatcaaagactttgtattgttgtatgaggtattcctaaatcgaacagttttttccttgtcatatgtgttcttgacttggcactataactagaggtaggagagctatactggaagcttgagagttttcctttttaatggctatgctgaatgccataaatatgcagcactatttcttgggcaaaattttctttcaccattatcatatgacccatcagcaaacttcagttcttttacacgtttttgttatatgtgattgtataatttgtcagatgtggtatatgttgcttatgctgatgctgcgtaatcaatattgtctattctattgtatgtaagctaacaaatattttgctggcagctgctcatttgcagaggttctgaaaccaattctggactggaaatagcatggattaaggaggacgaagcagtctgttgatttcttaattgtttgccggactaagcctggtagctggtaagtttggaaacttagtttctttttagagtaaattacaagtttgatcttcaccgatatgcttgtattagtcgcctttgccatcctaatgcccaagactgtagtgttcaaagttggctaaagccgtgatctttgccggatgtgcttgacggtcccccataatacgctaacttgggtgcttatctttctttgagatattttactgtcggcaaaatttctgtgcatatcttgctgataaaaacatcatatgcttttatcactgggggaaaagctagcttttgtgatgccctcaatagaaaattatttttctgagcatgatcagatctatatttaccccatgttttcacacgcttcacagaccttctgtaaaagcagaatctgcaaaagtggcctgaatatgtgacagatgggctttcacactggagatgctaatctttacttgtgtcctttaaggaaggaataaagctcagatgtaacaaaggatcaaaaggaaagtataatactttcagcatctattgacagctaatttctactcagttcataactacatcatagttggagaaaaattctcctgttctacttttgctctcagctctttattcaccgattaccaataaaaaggggtacacatccttcgttgtaagcaggcaaacaaggcaatcttcctcccataactgctctcagcttatcctgcttccataacttctctcggctgatagaagatatacgtttgagaacacgccgcgatggcaagagcaacaattggggctgctattCttgtctgtgtggtgattttagcgctggatgttactgctggcatactaggacttcaggctcagattgctcaaaacaaggtactattccaagatattaagaaaacaaatcttggtttccatttttctaggtttcacaaagggattttatgaaatcgaagttttgcgcaatacacaatatcttttttagatgtattcaatgtatataatgaaagggtttcatgtaatgggtgttttcagccattgcaactctatcttccactctaattgaatagtggttgactggttgttaatgtgaaaaagccaaagaccgctgacatgtatttctttgtcaatgttccactctaaatgaacgatcgttggtgtttcttattggcaggttaaaaaggtgagggtgttgttcatcgaatgtgagcaatcatcctccaaagcataccagttgggcctcgcggctgcagtgctccttgtagctgcccacgcagtggctaactttctcggaggttgtgcctgcatctgctctcagatggagttcatccgggcttccattaacaggaagctggcagcgactctgatagtcctctcctggtaaccaacccctctcttttattgaaaccctcccttttgtaagtcgtatagctcggatgttaaattatctcctttaacgtatacatcctgacaaaagaaacttccttttcaaaaaagaaaaagaaagaaagaaacatcgatttgttcttcttgtgttgaacgtttttgtgcttgcgactgacatcaccattgactgttcgatgttgtaacaggcttgctcttattgccggattctcgctgctgctcgccggtgccatgcgcaactccagcccccagagaaagtgcagcttggcgcaaggccaaaccctgagtctcggagggatcctgtgcttcgtccatgccggggtcaccgtcgcctactacgtcaccgccaacgctgcagcatacgaacttccttagagatcatgctacgagcaagctcatacttttatcacacacgagatcatcacctgatcaccaaccattctttccttcttttttttttcttcttaacctgctgTtttttttttcattcagtttgtgattcggcttttgcaaatcatggaagcatcgattgagttctgtattgtgttgaagtcaaaagaaaaattgatatacttgtgctttggttatttattacaagcctctctttgccct
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| CDS seq | atggagctgcagctcgccgccctctgcaacccccgcctcctccactcctcccatgccttcctccccaaggccacctccaccgcctccacctcctcctcgtcggcggcggccggagaagccctcaagcctcgcccgcgtctcccgccaccgcagcagcagcagcagcagcccggcgtctcccaccaacaccaaacgcggcggaggagggagctgggcgccgccgcgctcgcctccctctgcgcggggatcgaggcgctggccgccgaggggcggcacgacgaggcgcgcgacgcgttccgcggggcgcgcgcgggcgccccgttcacgccgctgccggcgtccacgtacgacgcgctggtggcctccgccgccgcgctgcgggagcccgggttcgccgcggcggtgctgtggcacgtcgagagctccgggttcgagccaggccagcgcgcgtggaaccgcgtgctccggatgcagctcgcgtgcgggatgctcgccgaggcgcgacaggtgttcgacggaatgccttcaaggagcgaggccacctgggggaccatgatgggcgggctgatcgacgccgggcgcccacgcggcgcgctcgcgctgttccgggagctgtgggaggaggtgggcggggatgctgcgccgagggtggtggtggtggccgtccgtgcggtgacggcattggggtcagcgtgtgccgggcagcagctgcactgttgcgttgctaagacagggatgtacgaggaccagtacctgtcgtgcgcgctcatcgacatgtataacaagtgcgggcagcttgatgaggcgaggcgggtctttgacgggatgcctcagaagagtgtcgtggcgtggaactccatgctcgcgtcgtattcgcttcatggatgcagtgaggaggcattggatttgtatcacagcatgtgcgagggtggtgttgacatagaccagttcacgttctccacgatgctcagggttttttctaggctgggcttgctggagcatgcaaagcaagctcatgctggcctgattcagagagggttacctctggacattgtcgggaacacggcattggtggatctgtattgcaaatggggtcagatggaagatgcaaggaatgtttttgagaggatgcctatcaggaatttgatctcttggaatgctctaatagcaggctacggctatcatggcatggggcaaaaggctattgagatgttcgaggagctaatagctgagggaattgctccaaaccatgttacatttctagctgtactaaatgcatgcagattttctggctttgttgaggaagggaagagaattttccagttgatgactcaaaatcaaagaacaaaaccacgggcaatgcattatgcttgtattatcgagctttttggtcaacaagggagattagatgaagcctattcaatgataaggaaagcaccgttcatccctacagcgaacatgtggggtgccttgctcactgcttccaggatccataagaatttgcagcttgctagattagctgctgagcaactgttggcgatggaacctcagaaaacaaacaattatgttgtacttcttaacttgtatattaactctgggagacagactgaggcctcaaaggtagttgatactttgaagaggaggggtttatgtatacatgctgcttgtagctggattactgttaggaaaaaagatcacaggtttttctttaaagatagtctccatccacaaagttctgaaatctataggaagttagattcattattgaaggagataaaacaacttggttatgttgctgaggagaatgaattgctccctgatattcttcctgatgaacaaaagacgtcgaaagtttaccatagtgaaagacttgccgttgcttttggccttatcagcacatctttgtctactaccttgagggtcacccagtgccatcggttgtgccatgactgccacaagctgctcatttgcagaggttctgaaaccaattctggactggaaatagcatggattaaggaggacgaagcagtctgttga
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| Protein seq | MELQLAALCNPRLLHSSHAFLPKATSTASTSSSSAAAGEALKPRPRLPPPQQQQQQPGVSHQHQTRRRRELGAAALASLCAGIEALAAEGRHDEARDAFRGARAGAPFTPLPASTYDALVASAAALREPGFAAAVLWHVESSGFEPGQRAWNRVLRMQLACGMLAEARQVFDGMPSRSEATWGTMMGGLIDAGRPRGALALFRELWEEVGGDAAPRVVVVAVRAVTALGSACAGQQLHCCVAKTGMYEDQYLSCALIDMYNKCGQLDEARRVFDGMPQKSVVAWNSMLASYSLHGCSEEALDLYHSMCEGGVDIDQFTFSTMLRVFSRLGLLEHAKQAHAGLIQRGLPLDIVGNTALVDLYCKWGQMEDARNVFERMPIRNLISWNALIAGYGYHGMGQKAIEMFEELIAEGIAPNHVTFLAVLNACRFSGFVEEGKRIFQLMTQNQRTKPRAMHYACIIELFGQQGRLDEAYSMIRKAPFIPTANMWGALLTASRIHKNLQLARLAAEQLLAMEPQKTNNYVVLLNLYINSGRQTEASKVVDTLKRRGLCIHAACSWITVRKKDHRFFFKDSLHPQSSEIYRKLDSLLKEIKQLGYVAEENELLPDILPDEQKTSKVYHSERLAVAFGLISTSLSTTLRVTQCHRLCHDCHKLLICRGSETNSGLEIAWIKEDEAVC |
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| Function | Pentatricopeptide repeat-containing protein At5g50390, chloroplastic [UniProtKB/Swiss-Prot:Q9FK33] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLima_08g0002520 | OsLima_08g0002520.01 | Chr08 | 2037940 | 2042604 | + | NAM | ||
| CDS seq | atggcaagagcaacaattggggctgctattCttgtctgtgtggtgattttagcgctggatgttactgctggcatactaggacttcaggctcagattgctcaaaacaaggttaaaaaggtgagggtgttgttcatcgaatgtgagcaatcatcctccaaagcataccagttgggcctcgcggctgcagtgctccttgtagctgcccacgcagtggctaactttctcggaggttgtgcctgcatctgctctcagatggagttcatccgggcttccattaacaggaagctggcagcgactctgatagtcctctcctggcttgctcttattgccggattctcgctgctgctcgccggtgccatgcgcaactccagcccccagagaaagtgcagcttggcgcaaggccaaaccctgagtctcggagggatcctgtgcttcgtccatgccggggtcaccgtcgcctactacgtcaccgccaacgctgcagcatacgaacttccttag
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| Protein seq | MARATIGAAILVCVVILALDVTAGILGLQAQIAQNKVKKVRVLFIECEQSSSKAYQLGLAAAVLLVAAHAVANFLGGCACICSQMEFIRASINRKLAATLIVLSWLALIAGFSLLLAGAMRNSSPQRKCSLAQGQTLSLGGILCFVHAGVTVAYYVTANAAAYELP |
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| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLima_08g0002520 | OsLima_08g0002520.02 | Chr08 | 2038070 | 2042676 | + | NAM | ||
| CDS seq | atggagctgcagctcgccgccctctgcaacccccgcctcctccactcctcccatgccttcctccccaaggccacctccaccgcctccacctcctcctcgtcggcggcggccggagaagccctcaagcctcgcccgcgtctcccgccaccgcagcagcagcagcagcagcccggcgtctcccaccaacaccaaacgcggcggaggagggagctgggcgccgccgcgctcgcctccctctgcgcggggatcgaggcgctggccgccgaggggcggcacgacgaggcgcgcgacgcgttccgcggggcgcgcgcgggcgccccgttcacgccgctgccggcgtccacgtacgacgcgctggtggcctccgccgccgcgctgcgggagcccgggttcgccgcggcggtgctgtggcacgtcgagagctccgggttcgagccaggccagcgcgcgtggaaccgcgtgctccggatgcagctcgcgtgcgggatgctcgccgaggcgcgacaggtgttcgacggaatgccttcaaggagcgaggccacctgggggaccatgatgggcgggctgatcgacgccgggcgcccacgcggcgcgctcgcgctgttccgggagctgtgggaggaggtgggcggggatgctgcgccgagggtggtggtggtggccgtccgtgcggtgacggcattggggtcagcgtgtgccgggcagcagctgcactgttgcgttgctaagacagggatgtacgaggaccagtacctgtcgtgcgcgctcatcgacatgtataacaagtgcgggcagcttgatgaggcgaggcgggtctttgacgggatgcctcagaagagtgtcgtggcgtggaactccatgctcgcgtcgtattcgcttcatggatgcagtgaggaggcattggatttgtatcacagcatgtgcgagggtggtgttgacatagaccagttcacgttctccacgatgctcagggttttttctaggctgggcttgctggagcatgcaaagcaagctcatgctggcctgattcagagagggttacctctggacattgtcgggaacacggcattggtggatctgtattgcaaatggggtcagatggaagatgcaaggaatgtttttgagaggatgcctatcaggaatttgatctcttggaatgctctaatagcaggctacggctatcatggcatggggcaaaaggctattgagatgttcgaggagctaatagctgagggaattgctccaaaccatgttacatttctagctgtactaaatgcatgcagattttctggctttgttgaggaagggaagagaattttccagttgatgactcaaaatcaaagaacaaaaccacgggcaatgcattatgcttgtattatcgagctttttggtcaacaagggagattagatgaagcctattcaatgataaggaaagcaccgttcatccctacagcgaacatgtggggtgccttgctcactgcttccaggatccataagaatttgcagcttgctagattagctgctgagcaactgttggcgatggaacctcagaaaacaaacaattatgttgtacttcttaacttgtatattaactctgggagacagactgaggcctcaaaggtagttgatactttgaagaggaggggtttatgtatacatgctgcttgtagctggattactgttaggaaaaaagatcacaggtttttctttaaagatagtctccatccacaaagttctgaaatctataggaagttagattcattattgaaggagataaaacaacttggttatgttgctgaggagaatgaattgctccctgatattcttcctgatgaacaaaagacgtcgaaagtttaccatagtgaaagacttgccgttgcttttggccttatcagcacatctttgtctactaccttgagggtcacccagtgccatcggttgtgccatgactgccacaagctgctcatttgcagaggttctgaaaccaattctggactggaaatagcatggattaaggaggacgaagcagtctgttga
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| Protein seq | MELQLAALCNPRLLHSSHAFLPKATSTASTSSSSAAAGEALKPRPRLPPPQQQQQQPGVSHQHQTRRRRELGAAALASLCAGIEALAAEGRHDEARDAFRGARAGAPFTPLPASTYDALVASAAALREPGFAAAVLWHVESSGFEPGQRAWNRVLRMQLACGMLAEARQVFDGMPSRSEATWGTMMGGLIDAGRPRGALALFRELWEEVGGDAAPRVVVVAVRAVTALGSACAGQQLHCCVAKTGMYEDQYLSCALIDMYNKCGQLDEARRVFDGMPQKSVVAWNSMLASYSLHGCSEEALDLYHSMCEGGVDIDQFTFSTMLRVFSRLGLLEHAKQAHAGLIQRGLPLDIVGNTALVDLYCKWGQMEDARNVFERMPIRNLISWNALIAGYGYHGMGQKAIEMFEELIAEGIAPNHVTFLAVLNACRFSGFVEEGKRIFQLMTQNQRTKPRAMHYACIIELFGQQGRLDEAYSMIRKAPFIPTANMWGALLTASRIHKNLQLARLAAEQLLAMEPQKTNNYVVLLNLYINSGRQTEASKVVDTLKRRGLCIHAACSWITVRKKDHRFFFKDSLHPQSSEIYRKLDSLLKEIKQLGYVAEENELLPDILPDEQKTSKVYHSERLAVAFGLISTSLSTTLRVTQCHRLCHDCHKLLICRGSETNSGLEIAWIKEDEAVC
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
| A5 | Chr08 | 2040028 | 2040569 | + | OsLima_08g0002520.01 | OsLima_08g0002520.02,OsLima_08g0002520.01 | All |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.053402 | 0.000000 | None |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_08g0138600 | RBH | 1.210215 | 1.022359 | 1.745569 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os08g04400 | RBH | 0.811654 | 0.685812 | 0.443150 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os08g0138600 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_08g0002660 | RBH | 0.123268 | 0.000000 | 2.599314 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_08g0002710 | RBH | 0.0 | 1.251819 | 0.758631 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_08g0002700 | RBH | 0.125230 | 2.981027 | 2.923100 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_08g0002680 | RBH | 0.221607 | 0.063876 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_08g0002500 | RBH | 3.589752 | 0.000000 | 4.439034 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_08G0031300 | RBH | 3.6965585 | 5.936866 | 4.2708915 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_08g0002380 | RBH | 0.144769 | 0.252775 | 0.116521 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_08G0035800 | RBH | 2.570175 | 5.661105 | 8.192771 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_08g0002530 | RBH | 0.171387 | 1.404463 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_08g0002350 | RBH | 1.156469 | 5.844526 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_08g0002560 | RBH | 0.452144 | 0.173635 | 0.338668 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_08g0002490 | RBH | 0.050057 | 0.000000 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_08G002500 | RBH | 0.293182 | 0.0 | 1.336444 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_08g0002370 | RBH | 1.347770 | 1.189607 | 2.323493 |
