Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| Os08g0197000 | OGI:08014790 | 3/16 | Nipponbare | IRGSP 1.0 | RAP-db | Chr08:5609250-5612337 | ||||||||
| Gene Symbol | OsFbox420, Os_F0206, OsFbox422, Os_F0246 | ||||||||||
| DNA seq | GAAGCAGGCCCGTCCTCGATTCGCCAAAAAAGCAAGTCCCCAATCTCTCCGTGAGTTCTCTTCTCCCACCTCGTCCCCCTCGATCGCCTGCTCCGGTGAGAATTCTCGCGATAGAATTCTTTCTTCTTGGTTGATTTCCTCCTTGCGCGCGTGATGCTGTCCTCGTAGCTAGCAGAATCGCGCTTTGGTGGTTGATGCGGTGGATCGCTGTTTCCATTGCAGGCAACCTGTTCGACGGAATGCAGCAGGGAGCGGCGGGGCAGGCTGGGCCGTCGGGTGGTGGTGGAGGCGGTGGCGGTGGCGGTGGCGGTGGCGCGGACCGCCTCAGCGCGCTCCCGGACGCGGTGCTCTTCCGGATCGTGTCGCACCTGGGGGCGCGGCAGGCGGTGCGCACGAGCGTGCTATCCAAGCGGTGGCGCCACGTGTGGGCGTCCGCGCCGCGCGTCGACGTCCGCCACCCCTGCGCCTGCGACGAGAGCGCCGACCAGGAGAGGTTCCACGGCTTCGTCACCACCATGCTCCTCAGGCGCCGCCCGTTCGCCCCCATCAAGGCGCTCCGGCTGTGCTGGAGCCACGACGGCGACGCCAACAACTGGATCGCTCATGCTGTCAGGCGTGGGGCCGAAGAAATCGATTTCTCCGCGAGGCATCACCAAGATGATCCGAAACCGGAGCTAGAGTACACGAGCTTCATTTCTCACAAGATCAAGATCTTGAAGCTGACGCGTGTCCGGATGGGCATCAAGTTTATCACGCAGATCTGCTATAGGTGCACTTTTTTGGAAGAATTAGAGCTCAAGAATGTTAATTCACTTGAAGGGCAGATTCAATCGACCTCGCTGAAGCGCTTGTCTATCATCAACTGCCTTATCTCTGATGGATTTTTGGTTGATGCTCCGAACCTTATCTCGCTCTGCTTCTTCAGACCTCTCAGCGGTAAGAGCACGGAGGGAGCCAATCACTCGTCTGATAATAGGAGTTGGCCATTCTCAGCGTCAGTGTGGGAGTTTGATGACGATGGATCTGATCATGATGATGATTTCTTTGCAATTGCTAGTGGTGGTGAACACTTTGATGATAAGAGAGACAATGAATCTGATCAAGACAATGGTTCTAGTGATGAAGACTCAGATGATAAGAGAGACCAAGAATCTGATCATGATGAAGATGTTCCCTCTTCCCCATATTCTGATTCTAAGGACTCCTGTGATGGCAGTGACAGTGAATGCGAGTCTTATGAATCCAGTGATAAGGAGGGTGATGATCTTGAAGATTGCGACAGCAATGATATGTTGGAAAACTTGATCAAGGTAGCTAGGGGCTTGACAGCTTATCATGGAGAGGTAAGTTTAATCGCCTTGCTGATACTATTTCGTTATTTTATTTGTATGCTTTTTTCCCTGCAGTACTGCACGCATTGCTTTTTCTCAATTCTTTGCAAGAAGATTTCCATTGTATGGGAAACGAACTAATTGCCAGTGTAATAACAGAATTGTCTTCATAAACTAAATGTGTAGAAGGAAGTTTTGTCAGTTCTGCTGGTGATGAGATTCCCAAATTAGTATAGCTATCTCAGTTAATAGTGCTAGTATTGCTGATGTTAGAGTACTGCCACTCAAACAAATGAAAATACTACTGTTGTAGCTTGCTGAGGGCAACATTAAGAAGTTCCTTACTAATTGATCAGCCAAATGAATGGCAACATTAGGTACTACGGCAAGTTCTTATGTCCGTACCTGATCTACTAGTGTGCAAGTATTCAATAACTTTTCTCTATGGTGTTGAACTTTGATTATATCTTATAGTTGACTTCTTGTTGTGCCTTAATTAGAACTCTCAATTAGCATCTTTTTTTTATTTGTCGAATTCTCCATTTGCCTTGGCCAGAAGAAATTATTTATTTTGTCATATAAGACCAAGCTAGCACATTAGTTTCTCTTTTTTAGATAATGGAAGTACAACTCAGCACATAGTTACTACAGCATTACAATACCAATATCTCACAAATATTTCACAATTGACTTGAGAGAAACCTTGGGTTCTTCTCATACCAGGAGAACAATTAGGTTTCCATTCTAGAACATTTGTTGGTAGTGCGACATGTGTACTAACTGATTGCTAAAAGTGCCAGTAACTTTCTAGGCATAGGTTGGTATTCCCCTGATGATTGCAAACCTGTGATTTTTTTCCTCTAATCTGGTCTTCATGTACCACTTCTGATTTTATGGCACATATTGTAGATTCGTAGTAGTGCTCTGGTAGGAGAAATGTTTTGGGCCACTGAATCACTTGATATGTATGGAAATGTGCAGGTGCTTCTGAGGAGGCAATTGGAAAATTTCCCCATGTTCAATAACCTGAAAACTCTGTCCCTTGGTGAATGGTGTATGGTTCCTGACTTCAGTGCTTTGTCAACCATACTTAAGAAATCACCTAAGGTAGAAAGGCTTTATCTTCACCTTGACATGGTACGTGTACTCATATGCTTGTTAAATGTTTGCTTAGAGTGTTTAAGCATGTTATTAATCCCTTAAACCATTGTTTTACAAAAGATCCACAGAGGAAGAGGGGACATCGATCCAAGTGGAGGATCATTTGCTTGCAACAACCTGAGGAAGGTTAAGATCACATGTTGTAAAGATGATGAAATGGTCCATATGCTGAAACAATTCCTCCAACGTAACGGCATATCACTTGAGAAGATTGTTCATCACACTTCTAGCACTCATAATGGCGAAGAAGACGGAGGCGGGGACTCCAGTGCGAAACGGAAGGCGCAAGGCGAAGTTGCGAGGCTAGCAGTGAAACAGAGGAGGGCGCGAAACAGTAGAAGCCCGGAGTGAGGGGAACATGTTTAAAATGCTGAGGAATCCAGTGCTGAGTTTACATTGCAGTTAGCAGTAGAATTCTTCACAGGATGTGTATATGCATCAAATCTAGTACAGGTACTTTGGGGACATGAAAAATTATGCATCCGTTGGTGTTGCATGAAAATAGATCGTTGGTCAATGTTCAGTGACTTGGAATCCTGTGAATTGCTATATGCCTATATCATGTTTGATGTATTGAGTAGTAATTGGCAGCGGCT
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| CDS seq | ATGCAGCAGGGAGCGGCGGGGCAGGCTGGGCCGTCGGGTGGTGGTGGAGGCGGTGGCGGTGGCGGTGGCGGTGGCGCGGACCGCCTCAGCGCGCTCCCGGACGCGGTGCTCTTCCGGATCGTGTCGCACCTGGGGGCGCGGCAGGCGGTGCGCACGAGCGTGCTATCCAAGCGGTGGCGCCACGTGTGGGCGTCCGCGCCGCGCGTCGACGTCCGCCACCCCTGCGCCTGCGACGAGAGCGCCGACCAGGAGAGGTTCCACGGCTTCGTCACCACCATGCTCCTCAGGCGCCGCCCGTTCGCCCCCATCAAGGCGCTCCGGCTGTGCTGGAGCCACGACGGCGACGCCAACAACTGGATCGCTCATGCTGTCAGGCGTGGGGCCGAAGAAATCGATTTCTCCGCGAGGCATCACCAAGATGATCCGAAACCGGAGCTAGAGTACACGAGCTTCATTTCTCACAAGATCAAGATCTTGAAGCTGACGCGTGTCCGGATGGGCATCAAGTTTATCACGCAGATCTGCTATAGGTGCACTTTTTTGGAAGAATTAGAGCTCAAGAATGTTAATTCACTTGAAGGGCAGATTCAATCGACCTCGCTGAAGCGCTTGTCTATCATCAACTGCCTTATCTCTGATGGATTTTTGGTTGATGCTCCGAACCTTATCTCGCTCTGCTTCTTCAGACCTCTCAGCGGTAAGAGCACGGAGGGAGCCAATCACTCGTCTGATAATAGGAGTTGGCCATTCTCAGCGTCAGTGTGGGAGTTTGATGACGATGGATCTGATCATGATGATGATTTCTTTGCAATTGCTAGTGGTGGTGAACACTTTGATGATAAGAGAGACAATGAATCTGATCAAGACAATGGTTCTAGTGATGAAGACTCAGATGATAAGAGAGACCAAGAATCTGATCATGATGAAGATGTTCCCTCTTCCCCATATTCTGATTCTAAGGACTCCTGTGATGGCAGTGACAGTGAATGCGAGTCTTATGAATCCAGTGATAAGGAGGGTGATGATCTTGAAGATTGCGACAGCAATGATATGTTGGAAAACTTGATCAAGGTAGCTAGGGGCTTGACAGCTTATCATGGAGAGGTGCTTCTGAGGAGGCAATTGGAAAATTTCCCCATGTTCAATAACCTGAAAACTCTGTCCCTTGGTGAATGGTGTATGGTTCCTGACTTCAGTGCTTTGTCAACCATACTTAAGAAATCACCTAAGGTAGAAAGGCTTTATCTTCACCTTGACATGATCCACAGAGGAAGAGGGGACATCGATCCAAGTGGAGGATCATTTGCTTGCAACAACCTGAGGAAGGTTAAGATCACATGTTGTAAAGATGATGAAATGGTCCATATGCTGAAACAATTCCTCCAACGTAACGGCATATCACTTGAGAAGATTGTTCATCACACTTCTAGCACTCATAATGGCGAAGAAGACGGAGGCGGGGACTCCAGTGCGAAACGGAAGGCGCAAGGCGAAGTTGCGAGGCTAGCAGTGAAACAGAGGAGGGCGCGAAACAGTAGAAGCCCGGAGTGA
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| Protein seq | MQQGAAGQAGPSGGGGGGGGGGGGGADRLSALPDAVLFRIVSHLGARQAVRTSVLSKRWRHVWASAPRVDVRHPCACDESADQERFHGFVTTMLLRRRPFAPIKALRLCWSHDGDANNWIAHAVRRGAEEIDFSARHHQDDPKPELEYTSFISHKIKILKLTRVRMGIKFITQICYRCTFLEELELKNVNSLEGQIQSTSLKRLSIINCLISDGFLVDAPNLISLCFFRPLSGKSTEGANHSSDNRSWPFSASVWEFDDDGSDHDDDFFAIASGGEHFDDKRDNESDQDNGSSDEDSDDKRDQESDHDEDVPSSPYSDSKDSCDGSDSECESYESSDKEGDDLEDCDSNDMLENLIKVARGLTAYHGEVLLRRQLENFPMFNNLKTLSLGEWCMVPDFSALSTILKKSPKVERLYLHLDMIHRGRGDIDPSGGSFACNNLRKVKITCCKDDEMVHMLKQFLQRNGISLEKIVHHTSSTHNGEEDGGGDSSAKRKAQGEVARLAVKQRRARNSRSPE |
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| Function | FBD-associated F-box protein At5g56370 [UniProtKB/Swiss-Prot:Q9FM94] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| Os08g0197000 | Os08t0197000-01 | Chr08 | 5609250 | 5612337 | + | irgsp1_rep | ||
| CDS seq | ATGCAGCAGGGAGCGGCGGGGCAGGCTGGGCCGTCGGGTGGTGGTGGAGGCGGTGGCGGTGGCGGTGGCGGTGGCGCGGACCGCCTCAGCGCGCTCCCGGACGCGGTGCTCTTCCGGATCGTGTCGCACCTGGGGGCGCGGCAGGCGGTGCGCACGAGCGTGCTATCCAAGCGGTGGCGCCACGTGTGGGCGTCCGCGCCGCGCGTCGACGTCCGCCACCCCTGCGCCTGCGACGAGAGCGCCGACCAGGAGAGGTTCCACGGCTTCGTCACCACCATGCTCCTCAGGCGCCGCCCGTTCGCCCCCATCAAGGCGCTCCGGCTGTGCTGGAGCCACGACGGCGACGCCAACAACTGGATCGCTCATGCTGTCAGGCGTGGGGCCGAAGAAATCGATTTCTCCGCGAGGCATCACCAAGATGATCCGAAACCGGAGCTAGAGTACACGAGCTTCATTTCTCACAAGATCAAGATCTTGAAGCTGACGCGTGTCCGGATGGGCATCAAGTTTATCACGCAGATCTGCTATAGGTGCACTTTTTTGGAAGAATTAGAGCTCAAGAATGTTAATTCACTTGAAGGGCAGATTCAATCGACCTCGCTGAAGCGCTTGTCTATCATCAACTGCCTTATCTCTGATGGATTTTTGGTTGATGCTCCGAACCTTATCTCGCTCTGCTTCTTCAGACCTCTCAGCGGTAAGAGCACGGAGGGAGCCAATCACTCGTCTGATAATAGGAGTTGGCCATTCTCAGCGTCAGTGTGGGAGTTTGATGACGATGGATCTGATCATGATGATGATTTCTTTGCAATTGCTAGTGGTGGTGAACACTTTGATGATAAGAGAGACAATGAATCTGATCAAGACAATGGTTCTAGTGATGAAGACTCAGATGATAAGAGAGACCAAGAATCTGATCATGATGAAGATGTTCCCTCTTCCCCATATTCTGATTCTAAGGACTCCTGTGATGGCAGTGACAGTGAATGCGAGTCTTATGAATCCAGTGATAAGGAGGGTGATGATCTTGAAGATTGCGACAGCAATGATATGTTGGAAAACTTGATCAAGGTAGCTAGGGGCTTGACAGCTTATCATGGAGAGGTGCTTCTGAGGAGGCAATTGGAAAATTTCCCCATGTTCAATAACCTGAAAACTCTGTCCCTTGGTGAATGGTGTATGGTTCCTGACTTCAGTGCTTTGTCAACCATACTTAAGAAATCACCTAAGGTAGAAAGGCTTTATCTTCACCTTGACATGATCCACAGAGGAAGAGGGGACATCGATCCAAGTGGAGGATCATTTGCTTGCAACAACCTGAGGAAGGTTAAGATCACATGTTGTAAAGATGATGAAATGGTCCATATGCTGAAACAATTCCTCCAACGTAACGGCATATCACTTGAGAAGATTGTTCATCACACTTCTAGCACTCATAATGGCGAAGAAGACGGAGGCGGGGACTCCAGTGCGAAACGGAAGGCGCAAGGCGAAGTTGCGAGGCTAGCAGTGAAACAGAGGAGGGCGCGAAACAGTAGAAGCCCGGAGTGA
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| Protein seq | MQQGAAGQAGPSGGGGGGGGGGGGGADRLSALPDAVLFRIVSHLGARQAVRTSVLSKRWRHVWASAPRVDVRHPCACDESADQERFHGFVTTMLLRRRPFAPIKALRLCWSHDGDANNWIAHAVRRGAEEIDFSARHHQDDPKPELEYTSFISHKIKILKLTRVRMGIKFITQICYRCTFLEELELKNVNSLEGQIQSTSLKRLSIINCLISDGFLVDAPNLISLCFFRPLSGKSTEGANHSSDNRSWPFSASVWEFDDDGSDHDDDFFAIASGGEHFDDKRDNESDQDNGSSDEDSDDKRDQESDHDEDVPSSPYSDSKDSCDGSDSECESYESSDKEGDDLEDCDSNDMLENLIKVARGLTAYHGEVLLRRQLENFPMFNNLKTLSLGEWCMVPDFSALSTILKKSPKVERLYLHLDMIHRGRGDIDPSGGSFACNNLRKVKITCCKDDEMVHMLKQFLQRNGISLEKIVHHTSSTHNGEEDGGGDSSAKRKAQGEVARLAVKQRRARNSRSPE
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | None | None | None |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_08g0197000 | RBH | 0.000000 | 0.0 | 2.560269 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os08g09710 | RBH | 0.000000 | 0.0 | 0.645889 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os08g0197050 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_08g0006250 | SBH | 0.040147 | 0.000000 | 0.134026 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_08g0006230 | SBH | 0.137691 | 0.280193 | 0.512362 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_08g0006310 | RBH | 0.0 | 0.469582 | 0.169964 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_08g0006270 | RBH | 0.000000 | 0.012700 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_08g0006090 | SBH | 0.0 | 0.718941 | 1.735899 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_08G0085700 | SBH | 0.431686 | 0.41799 | 1.558346 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_08g0005930 | SBH | 0.000000 | 0.033896 | 0.045819 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_08G0088800 | SBH | 0.231635 | 0.34843 | 2.241141 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_08g0005930 | RBH | 0.0 | 0.0 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_08g0006020 | RBH | 0.0 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_08g0005890 | SBH | 0.0 | 0.0 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_08g0006150 | SBH | 0.0 | 0.000000 | 0.000000 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_08g0005980 | RBH | 0.047904 | 1.130805 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_08G005970 | SBH | 0.0 | 0.0 | 0.000000 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_08g0005860 | SBH | 0.0 | 0.900052 | 0.0 |
