Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| Os07g0649800 | OGI:07060020 | 16/16 | Nipponbare | IRGSP 1.0 | RAP-db | Chr07:27165867-27166599 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | ATGTGCCAACACGCCCAAGCCAAGCTCACAGAATCAGACTTGAAGGAACTATGCCACACCTTACGAGAGGTAAGCCCTGCTCCTTCATGCTACAGATGCAATCAATATTTGTTGTGTATAATGTGCTTTCTTGTTTGCATATGTTCTTTTATGCCAATGCCAGCTGATGAAATTCCACTTACACTTTATTAAATGGGAGCATTTATTTACTAGTGAACTAGAGTTTTTTTTTTTGGCTGAATTATGTTGTTGCAACTCATGCTACATTGTGTTGTTTCCATTACAGGTGTTGGAAAGAATAATGAATGTAGAGGGGGCAGAACTAGAGATCCTCATTGGCCTATGTGCACAGATATGCAAAGTCATTCCTGAAGAATTTGTCCAAGAACTGGAGGGTGGACAGATTAAGAAAAGATTTATGAAGAGACTAGTTGACGCACTGAATGCAAATATGAACCCAGGTGGTCATTGTTCTGGAATCAGGAGGGTGATAATTGAGTTATCCATATACATGATGGAGTGCAATTCTCACTATGCCAATTGCTTCAATGAATTACGGATGATGGAAGCACTATCGATGGTAGAAGAGATGCCCTCAAGGGCTGAGAACTATACGATTTTCTTGGGTGACGTGGGTTTCATGGAATATAGTATACCTCTCATTGCTCTTGTGGACAGAGCAAAAGAACTGATGGGTCAACAGTGTTTGCAAGGAGTCAGTAGTGCCAACTGA
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| CDS seq | ATGTGCCAACACGCCCAAGCCAAGCTCACAGAATCAGACTTGAAGGAACTATGCCACACCTTACGAGAGGTGTTGGAAAGAATAATGAATGTAGAGGGGGCAGAACTAGAGATCCTCATTGGCCTATGTGCACAGATATGCAAAGTCATTCCTGAAGAATTTGTCCAAGAACTGGAGGGTGGACAGATTAAGAAAAGATTTATGAAGAGACTAGTTGACGCACTGAATGCAAATATGAACCCAGGTGGTCATTGTTCTGGAATCAGGAGGGTGATAATTGAGTTATCCATATACATGATGGAGTGCAATTCTCACTATGCCAATTGCTTCAATGAATTACGGATGATGGAAGCACTATCGATGGTAGAAGAGATGCCCTCAAGGGCTGAGAACTATACGATTTTCTTGGGTGACGTGGGTTTCATGGAATATAGTATACCTCTCATTGCTCTTGTGGACAGAGCAAAAGAACTGATGGGTCAACAGTGTTTGCAAGGAGTCAGTAGTGCCAACTGA
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| Protein seq | MCQHAQAKLTESDLKELCHTLREVLERIMNVEGAELEILIGLCAQICKVIPEEFVQELEGGQIKKRFMKRLVDALNANMNPGGHCSGIRRVIIELSIYMMECNSHYANCFNELRMMEALSMVEEMPSRAENYTIFLGDVGFMEYSIPLIALVDRAKELMGQQCLQGVSSAN |
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| Function | - | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| Os07g0649800 | Os07t0649800-00 | Chr07 | 27165867 | 27166599 | + | irgsp1_rep | ||
| CDS seq | ATGTGCCAACACGCCCAAGCCAAGCTCACAGAATCAGACTTGAAGGAACTATGCCACACCTTACGAGAGGTGTTGGAAAGAATAATGAATGTAGAGGGGGCAGAACTAGAGATCCTCATTGGCCTATGTGCACAGATATGCAAAGTCATTCCTGAAGAATTTGTCCAAGAACTGGAGGGTGGACAGATTAAGAAAAGATTTATGAAGAGACTAGTTGACGCACTGAATGCAAATATGAACCCAGGTGGTCATTGTTCTGGAATCAGGAGGGTGATAATTGAGTTATCCATATACATGATGGAGTGCAATTCTCACTATGCCAATTGCTTCAATGAATTACGGATGATGGAAGCACTATCGATGGTAGAAGAGATGCCCTCAAGGGCTGAGAACTATACGATTTTCTTGGGTGACGTGGGTTTCATGGAATATAGTATACCTCTCATTGCTCTTGTGGACAGAGCAAAAGAACTGATGGGTCAACAGTGTTTGCAAGGAGTCAGTAGTGCCAACTGA
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| Protein seq | MCQHAQAKLTESDLKELCHTLREVLERIMNVEGAELEILIGLCAQICKVIPEEFVQELEGGQIKKRFMKRLVDALNANMNPGGHCSGIRRVIIELSIYMMECNSHYANCFNELRMMEALSMVEEMPSRAENYTIFLGDVGFMEYSIPLIALVDRAKELMGQQCLQGVSSAN |
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | None | None | None |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_07g0649800 | RBH | 0.473146 | 0.0 | 0.0 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os07g45540 | RBH | 0.319966 | 0.0 | 0.0 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os07g0653050 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_07g0025770 | SBH | 0.000000 | 1.542174 | 0.000000 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_07g0025820 | RBH | 0.0 | 0.0 | 0.072890 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_07g0025650 | SBH | 0.0 | 0.000000 | 0.272390 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_07g0025590 | SBH | 0.020997 | 0.0 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_07g0025840 | RBH | 0.0 | 0.0 | 0.000000 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_07G0447700 | SBH | 1.501979 | 5.911939 | 2.230384 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_07g0026320 | SBH | 0.053549 | 0.042442 | 0.098201 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_07G0459800 | RBH | 0.084734 | 0.0324155 | 1.712902 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_07g0025630 | SBH | 0.0 | 0.000000 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_07g0025790 | RBH | 0.0 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_07g0025680 | SBH | 0.347252 | 5.122987 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_07g0025860 | RBH | 0.0 | 0.0 | 0.0 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_07g0025650 | SBH | 0.043011 | 0.394089 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_07G025500 | SBH | 0.0 | 0.103880 | 0.153150 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_07g0025540 | RBH | 0.0 | 0.0 | 0.0 |
