Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| Os07g0546400 | OGI:07060800 | 16/16 | Nipponbare | IRGSP 1.0 | RAP-db | Chr07:21654643-21657358 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | GCAGGAGTACTAGTGTGAGTGTTGCTGCTGCTGCTGCTACGGTTTCTTGTTCGTTTTGGTTCATCTCCTTCCTCCAATGGCGAGAGCTCGCAGCAATTAGGCGAGTAAAATAATGTTCCATTCCAATTTCCTCTTCTTCTTCCTCTTCCTCTTCTTCCCCGGAGTTAATGGCCTAATAGCTACAGCTCATCTGCTTCGCCTCTGTCAGTGAGTGCGAGGCCTTTAATGGCGTTTGGTGGGCTGCATGGCAATGGCCACCAGCTTACCTCCTCATTTAAGAGCATAAACCGCATGTTCCTTCTGACGTTTCGCATTGATTTTGGGAGTCAATTGGATGGGTTAGATTAGGCTGGTGTGTTCTTTGATTCTTGTACGAGTAAATTGTTTGGTTTCTTTGTCCTGAATTGTGTTTTGTTTTCGTGGTTTTGGTGAATTTTGGCAGGAGGTTCTTGCACCGTTCTGTGGTAGGATCAAGAATTTGGGTGGCGGCGGCGCCGGCGGCGAGGGGGTGGTCGGAGCTGCGGCGGCGGCGAGGGTCGTGTTGCGTGGGTTCCCTGGCGGTGCTGAGGCATTCGAGCTCGTCGCGAGGTTCTGTTACACCGGCGGCGGCGGCGGCGGCGTCGCGGTGACCGCGTCGAACGCGTGCGCGCTGCGGTGCGCGGCTGAGTTCATGGACATGGCGGCGGCGGCGGCGGAGGTGTCGACACCGCCGAGCCTGGTGAAGATGACGGAGAAGGCTCTCGACGAGATGCCGCAGTGGTCGTGGCAGAGCGTGGTGGACGCCGTGAGGCAGTGCCAGCGGCTGCTGCCGACGGCGGACGCCACGGGGGTGTTCGACCGGGTCGTCGGCGCGCTGGTGTCCCACGTGGCCGTCTCCCCCGGGGACGCCACCCCGACGAGCTCCTCGCCGGAGAGCTCGGCGTTCCGGTTCTCGTGCGACACCAAGAGCAGCTGCCTCAGCGCGCGGTGCACCAGCCGCACCTGGTGGTTCGAGGACCTCGCCGTCGTCCTCGGCCCCGGCATGGTGGAGCGCGTCGCCGGGGCGCTCCTCGCCAGGGGCACCGACCACGGCGTCGTCTCCCGGTTCCTCTTCTACTACCTCAAGTGCCGCGTCGCCGGCGCCGCCACCGCCGACGACAAGAGGGCGATGCTCGAGGCGGCGATCGCCGCCATGTCCGGCCTCGACCGGAGCTCGGTCTCCTGCAGGGGCCTCTTCGGCATCCTCCGCATCTCCTCACCGCTCAAGCTCCCCACCTCCTGCCACGACAGCCTCGTCGCCATGATCGGCGCCAAGCTCGACCACGCGACGCTCGACAACCTGCTCGTCCCGGCGCCGCCCGGGACGACGAGCAGCCTGTACGACGTCACCCTCGTCCTCCGCTTCCTGGACGCCTTCCTCCACCACGCCGCCGCCACCGGCGCGCGCGGCGAGACGCCGAGGCTGAAGAAGGTGGGCAAGCTCGTCGACCTGTACCTCGCCGAGGTCGCCCCGGACCCGTCGCTGCGCCCGGCCATGTTCGTCGAGCTCGCCACGGCGCTGCCCGCCGCGGCGAGGGACTGCCACGACGCGCTTTACCGCGCCATCGACGTCTACTTCCAGGTAAATTACTCAGATCTTTGGTGCCGCCTAGCCTCGACAGCGAGCACTGTTCTTGATTTTGTCAGCATTTCACAGACTCACCCTCGCATTAATTGCTACTAGTGCGTTTTATTGCTACTCCTACCTCCTCTGAATCCTATGCATCATCGGCTTCTGAATGTTCTCTGAAGCCTGAAACGATCGAGTTGTCTCAAGAAAAAAAAAAAGTTGGTCATTGTCCTGGACGCTTAAGATTTTGGCACTTTTGTCACTGTCAGTGCTGTTAATCCTGCTGATTAAGATGCTAAATTAGCTTGAGTTTTTTTCCTAATTAATTGCTCTACTAGCTGAAAGCTAATGGGTTTTGTTTTGGTCGATCATGGCAGGTTCACACGCGGCTGACGGAGGAGGAGAAGATGAGGATCTGCAAGGGGATAAACTACGAGAAGCTCTCGCCGGAGTGCTGCAAGCACCTCGCCCGGAACGCCGGATTCCCGACGAGGGCGGCGGTGCAGGCGCTGGCGTCGCAGCACACGGTGCTCAAGAGCCTCCTCCGCGGCGGCGGCCCGGACGAACACCTGAGGCCGGTGTCCGCGGCGAAGCACCGCGCCGGCGGCGAGGACCACGACGACCTCGTCGCCGCCGGCGGCCAGGTCGTCCTGTACGCCGGGAGGCTCGACCTGTCGCTGGAGAGCCAGAATCTCAGGTCGCTCCTCGACGGGATGCACTGGCGGGTGATGGAGCTCGAGAAGGTGTGCAGCCGGATGAAGACGCAGATGAGCAAGATGAAGGCGGCGAGGAGAGCCACCGGAGGCGGCGGCGGCGCCGCCGCCGGCCGCCGCGCTGCTTCAAGATCACTTCCCCGGATGTGTTCTTGAAGCTCGTTTCATACTGATTGTACATAGGAGTAGCAGCAAATGCAGAGATGTGGTTCTTTCATCCCTGCATTCTTGCCCCTTTTTTTTCTCTTCATTTTTTTTCTCAATTTTTTTCCATATGTGTATTATGATGATGCATCAGTTCTTGGTCACTGGAGAGAAGAGCTAGTAGCTGTGAAAATTGGGAGTGTCTGAACTCTGAAGAACATGGCAATGCATATAGATTGTGAATATAGATTAACTAAAAGTCTATAATACC
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| CDS seq | GAGGTTCTTGCACCGTTCTGTGGTAGGATCAAGAATTTGGGTGGCGGCGGCGCCGGCGGCGAGGGGGTGGTCGGAGCTGCGGCGGCGGCGAGGGTCGTGTTGCGTGGGTTCCCTGGCGGTGCTGAGGCATTCGAGCTCGTCGCGAGGTTCTGTTACACCGGCGGCGGCGGCGGCGGCGTCGCGGTGACCGCGTCGAACGCGTGCGCGCTGCGGTGCGCGGCTGAGTTCATGGACATGGCGGCGGCGGCGGCGGAGGTGTCGACACCGCCGAGCCTGGTGAAGATGACGGAGAAGGCTCTCGACGAGATGCCGCAGTGGTCGTGGCAGAGCGTGGTGGACGCCGTGAGGCAGTGCCAGCGGCTGCTGCCGACGGCGGACGCCACGGGGGTGTTCGACCGGGTCGTCGGCGCGCTGGTGTCCCACGTGGCCGTCTCCCCCGGGGACGCCACCCCGACGAGCTCCTCGCCGGAGAGCTCGGCGTTCCGGTTCTCGTGCGACACCAAGAGCAGCTGCCTCAGCGCGCGGTGCACCAGCCGCACCTGGTGGTTCGAGGACCTCGCCGTCGTCCTCGGCCCCGGCATGGTGGAGCGCGTCGCCGGGGCGCTCCTCGCCAGGGGCACCGACCACGGCGTCGTCTCCCGGTTCCTCTTCTACTACCTCAAGTGCCGCGTCGCCGGCGCCGCCACCGCCGACGACAAGAGGGCGATGCTCGAGGCGGCGATCGCCGCCATGTCCGGCCTCGACCGGAGCTCGGTCTCCTGCAGGGGCCTCTTCGGCATCCTCCGCATCTCCTCACCGCTCAAGCTCCCCACCTCCTGCCACGACAGCCTCGTCGCCATGATCGGCGCCAAGCTCGACCACGCGACGCTCGACAACCTGCTCGTCCCGGCGCCGCCCGGGACGACGAGCAGCCTGTACGACGTCACCCTCGTCCTCCGCTTCCTGGACGCCTTCCTCCACCACGCCGCCGCCACCGGCGCGCGCGGCGAGACGCCGAGGCTGAAGAAGGTGGGCAAGCTCGTCGACCTGTACCTCGCCGAGGTCGCCCCGGACCCGTCGCTGCGCCCGGCCATGTTCGTCGAGCTCGCCACGGCGCTGCCCGCCGCGGCGAGGGACTGCCACGACGCGCTTTACCGCGCCATCGACGTCTACTTCCAGGTTCACACGCGGCTGACGGAGGAGGAGAAGATGAGGATCTGCAAGGGGATAAACTACGAGAAGCTCTCGCCGGAGTGCTGCAAGCACCTCGCCCGGAACGCCGGATTCCCGACGAGGGCGGCGGTGCAGGCGCTGGCGTCGCAGCACACGGTGCTCAAGAGCCTCCTCCGCGGCGGCGGCCCGGACGAACACCTGAGGCCGGTGTCCGCGGCGAAGCACCGCGCCGGCGGCGAGGACCACGACGACCTCGTCGCCGCCGGCGGCCAGGTCGTCCTGTACGCCGGGAGGCTCGACCTGTCGCTGGAGAGCCAGAATCTCAGGTCGCTCCTCGACGGGATGCACTGGCGGGTGATGGAGCTCGAGAAGGTGTGCAGCCGGATGAAGACGCAGATGAGCAAGATGAAGGCGGCGAGGAGAGCCACCGGAGGCGGCGGCGGCGCCGCCGCCGGCCGCCGCGCTGCTTCAAGATCACTTCCCCGGATGTGTTCTTGA
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| Protein seq | EVLAPFCGRIKNLGGGGAGGEGVVGAAAAARVVLRGFPGGAEAFELVARFCYTGGGGGGVAVTASNACALRCAAEFMDMAAAAAEVSTPPSLVKMTEKALDEMPQWSWQSVVDAVRQCQRLLPTADATGVFDRVVGALVSHVAVSPGDATPTSSSPESSAFRFSCDTKSSCLSARCTSRTWWFEDLAVVLGPGMVERVAGALLARGTDHGVVSRFLFYYLKCRVAGAATADDKRAMLEAAIAAMSGLDRSSVSCRGLFGILRISSPLKLPTSCHDSLVAMIGAKLDHATLDNLLVPAPPGTTSSLYDVTLVLRFLDAFLHHAAATGARGETPRLKKVGKLVDLYLAEVAPDPSLRPAMFVELATALPAAARDCHDALYRAIDVYFQVHTRLTEEEKMRICKGINYEKLSPECCKHLARNAGFPTRAAVQALASQHTVLKSLLRGGGPDEHLRPVSAAKHRAGGEDHDDLVAAGGQVVLYAGRLDLSLESQNLRSLLDGMHWRVMELEKVCSRMKTQMSKMKAARRATGGGGGAAAGRRAASRSLPRMCS |
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| Function | BTB/POZ domain-containing protein At3g22104 [UniProtKB/Swiss-Prot:Q9C5J4] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| Os07g0546400 | Os07t0546400-01 | Chr07 | 21654643 | 21657358 | + | irgsp1_rep | ||
| CDS seq | GAGGTTCTTGCACCGTTCTGTGGTAGGATCAAGAATTTGGGTGGCGGCGGCGCCGGCGGCGAGGGGGTGGTCGGAGCTGCGGCGGCGGCGAGGGTCGTGTTGCGTGGGTTCCCTGGCGGTGCTGAGGCATTCGAGCTCGTCGCGAGGTTCTGTTACACCGGCGGCGGCGGCGGCGGCGTCGCGGTGACCGCGTCGAACGCGTGCGCGCTGCGGTGCGCGGCTGAGTTCATGGACATGGCGGCGGCGGCGGCGGAGGTGTCGACACCGCCGAGCCTGGTGAAGATGACGGAGAAGGCTCTCGACGAGATGCCGCAGTGGTCGTGGCAGAGCGTGGTGGACGCCGTGAGGCAGTGCCAGCGGCTGCTGCCGACGGCGGACGCCACGGGGGTGTTCGACCGGGTCGTCGGCGCGCTGGTGTCCCACGTGGCCGTCTCCCCCGGGGACGCCACCCCGACGAGCTCCTCGCCGGAGAGCTCGGCGTTCCGGTTCTCGTGCGACACCAAGAGCAGCTGCCTCAGCGCGCGGTGCACCAGCCGCACCTGGTGGTTCGAGGACCTCGCCGTCGTCCTCGGCCCCGGCATGGTGGAGCGCGTCGCCGGGGCGCTCCTCGCCAGGGGCACCGACCACGGCGTCGTCTCCCGGTTCCTCTTCTACTACCTCAAGTGCCGCGTCGCCGGCGCCGCCACCGCCGACGACAAGAGGGCGATGCTCGAGGCGGCGATCGCCGCCATGTCCGGCCTCGACCGGAGCTCGGTCTCCTGCAGGGGCCTCTTCGGCATCCTCCGCATCTCCTCACCGCTCAAGCTCCCCACCTCCTGCCACGACAGCCTCGTCGCCATGATCGGCGCCAAGCTCGACCACGCGACGCTCGACAACCTGCTCGTCCCGGCGCCGCCCGGGACGACGAGCAGCCTGTACGACGTCACCCTCGTCCTCCGCTTCCTGGACGCCTTCCTCCACCACGCCGCCGCCACCGGCGCGCGCGGCGAGACGCCGAGGCTGAAGAAGGTGGGCAAGCTCGTCGACCTGTACCTCGCCGAGGTCGCCCCGGACCCGTCGCTGCGCCCGGCCATGTTCGTCGAGCTCGCCACGGCGCTGCCCGCCGCGGCGAGGGACTGCCACGACGCGCTTTACCGCGCCATCGACGTCTACTTCCAGGTTCACACGCGGCTGACGGAGGAGGAGAAGATGAGGATCTGCAAGGGGATAAACTACGAGAAGCTCTCGCCGGAGTGCTGCAAGCACCTCGCCCGGAACGCCGGATTCCCGACGAGGGCGGCGGTGCAGGCGCTGGCGTCGCAGCACACGGTGCTCAAGAGCCTCCTCCGCGGCGGCGGCCCGGACGAACACCTGAGGCCGGTGTCCGCGGCGAAGCACCGCGCCGGCGGCGAGGACCACGACGACCTCGTCGCCGCCGGCGGCCAGGTCGTCCTGTACGCCGGGAGGCTCGACCTGTCGCTGGAGAGCCAGAATCTCAGGTCGCTCCTCGACGGGATGCACTGGCGGGTGATGGAGCTCGAGAAGGTGTGCAGCCGGATGAAGACGCAGATGAGCAAGATGAAGGCGGCGAGGAGAGCCACCGGAGGCGGCGGCGGCGCCGCCGCCGGCCGCCGCGCTGCTTCAAGATCACTTCCCCGGATGTGTTCTTGA
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| Protein seq | EVLAPFCGRIKNLGGGGAGGEGVVGAAAAARVVLRGFPGGAEAFELVARFCYTGGGGGGVAVTASNACALRCAAEFMDMAAAAAEVSTPPSLVKMTEKALDEMPQWSWQSVVDAVRQCQRLLPTADATGVFDRVVGALVSHVAVSPGDATPTSSSPESSAFRFSCDTKSSCLSARCTSRTWWFEDLAVVLGPGMVERVAGALLARGTDHGVVSRFLFYYLKCRVAGAATADDKRAMLEAAIAAMSGLDRSSVSCRGLFGILRISSPLKLPTSCHDSLVAMIGAKLDHATLDNLLVPAPPGTTSSLYDVTLVLRFLDAFLHHAAATGARGETPRLKKVGKLVDLYLAEVAPDPSLRPAMFVELATALPAAARDCHDALYRAIDVYFQVHTRLTEEEKMRICKGINYEKLSPECCKHLARNAGFPTRAAVQALASQHTVLKSLLRGGGPDEHLRPVSAAKHRAGGEDHDDLVAAGGQVVLYAGRLDLSLESQNLRSLLDGMHWRVMELEKVCSRMKTQMSKMKAARRATGGGGGAAAGRRAASRSLPRMCS
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | None | None | None |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_07g0546400 | RBH | 0.463867 | 0.107503 | 0.420112 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os07g36230 | RBH | 0.384409 | 0.071904 | 0.199918 |
| Nipponbare | IRGSP 1.0 | RAP-db | NA | NA | NA | NA | NA |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_07g0018610 | RBH | 0.0 | 2.805842 | 1.086437 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_07g0018530 | RBH | 0.000000 | 0.0 | 0.535826 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_07g0018470 | RBH | 0.000000 | 6.128960 | 3.798020 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_07g0018370 | RBH | 0.048528 | 0.049360 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_07g0018460 | RBH | 2.507303 | 1.479480 | 1.515346 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_07G0353900 | RBH | 4.1437785 | 5.5615165 | 12.033778 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_07g0018960 | RBH | 0.000000 | 0.0 | 0.235346 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_07G0365200 | RBH | 4.9315995 | 4.447686 | 6.4898335 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_07g0018240 | RBH | 0.035479 | 0.037546 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_07g0018390 | RBH | 0.000000 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_07g0018240 | RBH | 0.0 | 0.0 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_07g0018550 | RBH | 0.356091 | 0.326430 | 0.196455 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_07g0018350 | RBH | 0.050920 | 3.508542 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_07G018230 | RBH | 0.000000 | 0.0 | 2.085891 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_07g0018330 | RBH | 0.000000 | 0.0 | 1.014058 |
