Rice Gene Index (RGI): a comprehensive pan-genome database for comparative and functional genomics of Asian rice.

Basic Info

Gene ID		OGI # \| Score			Accession \| Assembly \| Annotation			Location		Links
LOC_Os07g36230		OGI:07060800 \| 16/16			Nipponbare \| IRGSP 1.0 \| MSU			Chr07:21653254-21657381		Homologues MicroCollinearity RGI-JBrowse RGAP Ricevarmap2
Gene Symbol		-
DNA seq		ATTCCCCAAAGCTCTCTCCCTGCAAACTCTCCACTTGCAGGGTGGCAGAGGCTGTCAGTAGAGCTCAGGATCCACCAACTTCTTTGGCTGGCCCCTCTCCTCCATCTCTCTCTCTCTCACATTGCAAGCCATTGACCACTCATCAGAGCCAGAGCAGCTGCCATTGTTGAGCATTTAGCCATTTGGAAGCTTGGGCTTTTCTCTCTGTGAGTGAGGAGGTTTGGGGTTGGGGGTGGTGCCATCCATCTATCCCTTTGTGTGTGTTACTGCTTCCATCCCCATCATTGCAGCCTTTTCCTTCTTCTTTGCCATGTTGCTTTAAAGCTGGTTGTTTTGTGGTGTGCTGCTGTGGTGTGTGGCAACAAAAAGAGGACGATGGGCTGTGTTCTTGAGGTTGATGTGGATGGTGAAGAGGTCTTCCTCGTTGATAAGGTTCTTCCTCCTTTCCTTTCCCTTCTTGCAGTTCTTCTTCCTTCTTGGTAGCAACAAATCTTCTTCTTGCAGTTCTTCCTAAGGTCTCTTCTTTTCTTGCTCTGTTCTGCTGCTTCTCATCCTAAGATGATGAATTGGTGACGATGGTGATGTTCTTGTTGTTGGTTTTTCCTTTCTTAGGTTGACAGCTTGCCTCTGTCGTCTGGGGATTATTGTTCTGTACTCTAGCTTCTGGTCTCTAGTGTTTCACCACCAAGTTCTTGGGGATGAGTGAGGAAGTGTGTCACATCCTGCTGGAATTGAGCCTGTTTCAATTCCTAGCATTTGTTGTTTCCTCTGTCCAAAACTGTTTCAGGTAGTCCCCAAATTTTTTTGGCATTACCTCGCGATCTCCTTCCCAATTTTGGTCTCTTCCATTCTTTGCTTTTATCCCCTTGTGCTGTTCTCTCCTTGATCCCTAGTCGTCGGATTTTGGATTTCGTGCGGCTTGTCACATCCTGCTTGTTTCATGTACCAACCTCGAATTCGTAGTTACGATTTGCTTCTTCTTGGTCTATAAAATGCTCGCATTGTCTGTCGCCTCATCGCTTGTTCTTGCTGTAATTTTGTTCTTGAGCTGTAGCCTGTCTCTCCTGTGGGAGTGGGACAGGTTCGTGCGAATGCAAGCCTGTCAGGTTGTACACACGCTGTTGGAATTGAATCCTCATCATCATCGCCTTAATTGCATCGGTTAATCTGAATTTCTCCCTGTAATTCTGCTGTTAATACCCCCAGCTGCTTCTGAATATTTTTTTTCTACATTTTTTACTGCGAGTTCAGAGATTAGATGAGGAGGAAGACGTCGCGATCTTCCATTTAAGTGCGGTGTGGGTTCCATTTCGCCATCGCCATCAATGAGCAGCCAGCTCGCCAAGCCTAGCCATTCTTGATCTCTTCTTCTTCTTCCTCCTTAATGGCGCAGGAGTACTAGTGTGAGTGTTGCTGCTGCTGCTGCTACGGTTTCTTGTTCGTTTTGGTTCATCTCCTTCCTCCAATGGCGAGAGCTCGCAGCAATTAGGCGAGTAAAATAATGTTCCATTCCAATTTCCTCTTCTTCTTCCTCTTCCTCTTCTTCCCCGGAGTTAATGGCCTAATAGCTACAGCTCATCTGCTTCGCCTCTGTCAGTGAGTGCGAGGCCTTTAATGGCGTTTGGTGGGCTGCATGGCAATGGCCACCAGCTTACCTCCTCATTTAAGAGCATAAACCGCATGTTCCTTCTGACGTTTCGCATTGATTTTGGGAGTCAATTGGATGGGTTAGATTAGGCTGGTGTGTTCTTTGATTCTTGTACGAGTAAATTGTTTGGTTTCTTTGTCCTGAATTGTGTTTTGTTTTCGTGGTTTTGGTGAATTTTGGCAGGAGGTTCTTGCACCGTTCTGTGGTAGGATCAAGAATTTGGGTGGCGGCGGCGCCGGCGGCGAGGGGGTGGTCGGAGCTGCGGCGGCGGCGAGGGTCGTGTTGCGTGGGTTCCCTGGCGGTGCTGAGGCATTCGAGCTCGTCGCGAGGTTCTGTTACACCGGCGGCGGCGGCGGCGGCGTCGCGGTGACCGCGTCGAACGCGTGCGCGCTGCGGTGCGCGGCTGAGTTCATGGACATGGCGGCGGCGGCGGCGGAGGTGTCGACACCGCCGAGCCTGGTGAAGATGACGGAGAAGGCTCTCGACGAGATGCCGCAGTGGTCGTGGCAGAGCGTGGTGGACGCCGTGAGGCAGTGCCAGCGGCTGCTGCCGACGGCGGACGCCACGGGGGTGTTCGACCGGGTCGTCGGCGCGCTGGTGTCCCACGTGGCCGTCTCCCCCGGGGACGCCACCCCGACGAGCTCCTCGCCGGAGAGCTCGGCGTTCCGGTTCTCGTGCGACACCAAGAGCAGCTGCCTCAGCGCGCGGTGCACCAGCCGCACCTGGTGGTTCGAGGACCTCGCCGTCGTCCTCGGCCCCGGCATGGTGGAGCGCGTCGCCGGGGCGCTCCTCGCCAGGGGCACCGACCACGGCGTCGTCTCCCGGTTCCTCTTCTACTACCTCAAGTGCCGCGTCGCCGGCGCCGCCACCGCCGACGACAAGAGGGCGATGCTCGAGGCGGCGATCGCCGCCATGTCCGGCCTCGACCGGAGCTCGGTCTCCTGCAGGGGCCTCTTCGGCATCCTCCGCATCTCCTCACCGCTCAAGCTCCCCACCTCCTGCCACGACAGCCTCGTCGCCATGATCGGCGCCAAGCTCGACCACGCGACGCTCGACAACCTGCTCGTCCCGGCGCCGCCCGGGACGACGAGCAGCCTGTACGACGTCACCCTCGTCCTCCGCTTCCTGGACGCCTTCCTCCACCACGCCGCCGCCACCGGCGCGCGCGGCGAGACGCCGAGGCTGAAGAAGGTGGGCAAGCTCGTCGACCTGTACCTCGCCGAGGTCGCCCCGGACCCGTCGCTGCGCCCGGCCATGTTCGTCGAGCTCGCCACGGCGCTGCCCGCCGCGGCGAGGGACTGCCACGACGCGCTTTACCGCGCCATCGACGTCTACTTCCAGGTAAATTACTCAGATCTTTGGTGCCGCCTAGCCTCGACAGCGAGCACTGTTCTTGATTTTGTCAGCATTTCACAGACTCACCCTCGCATTAATTGCTACTAGTGCGTTTTATTGCTACTCCTACCTCCTCTGAATCCTATGCATCATCGGCTTCTGAATGTTCTCTGAAGCCTGAAACGATCGAGTTGTCTCAAGAAAAAAAAAAAGTTGGTCATTGTCCTGGACGCTTAAGATTTTGGCACTTTTGTCACTGTCAGTGCTGTTAATCCTGCTGATTAAGATGCTAAATTAGCTTGAGTTTTTTTCCTAATTAATTGCTCTACTAGCTGAAAGCTAATGGGTTTTGTTTTGGTCGATCATGGCAGGTTCACACGCGGCTGACGGAGGAGGAGAAGATGAGGATCTGCAAGGGGATAAACTACGAGAAGCTCTCGCCGGAGTGCTGCAAGCACCTCGCCCGGAACGCCGGATTCCCGACGAGGGCGGCGGTGCAGGCGCTGGCGTCGCAGCACACGGTGCTCAAGAGCCTCCTCCGCGGCGGCGGCCCGGACGAACACCTGAGGCCGGTGTCCGCGGCGAAGCACCGCGCCGGCGGCGAGGACCACGACGACCTCGTCGCCGCCGGCGGCCAGGTCGTCCTGTACGCCGGGAGGCTCGACCTGTCGCTGGAGAGCCAGAATCTCAGGTCGCTCCTCGACGGGATGCACTGGCGGGTGATGGAGCTCGAGAAGGTGTGCAGCCGGATGAAGACGCAGATGAGCAAGATGAAGGCGGCGAGGAGAGCCACCGGAGGCGGCGGCGGCGCCGCCGCCGGCCGCCGCGCTGCTTCAAGATCACTTCCCCGGATGTGTTCTTGAAGCTCGTTTCATACTGATTGTACATAGGAGTAGCAGCAAATGCAGAGATGTGGTTCTTTCATCCCTGCATTCTTGCCCCTTTTTTTTCTCTTCATTTTTTTTCTCAATTTTTTTCCATATGTGTATTATGATGATGCATCAGTTCTTGGTCACTGGAGAGAAGAGCTAGTAGCTGTGAAAATTGGGAGTGTCTGAACTCTGAAGAACATGGCAATGCATATAGATTGTGAATATAGATTAACTAAAAGTCTATAATACCACAACTTCTTCTTCATAACACAA More
CDS seq		ATGGGCTGTGTTCTTGAGGTTGATGTGGATGGTGAAGAGGTCTTCCTCGTTGATAAGGAGGTTCTTGCACCGTTCTGTGGTAGGATCAAGAATTTGGGTGGCGGCGGCGCCGGCGGCGAGGGGGTGGTCGGAGCTGCGGCGGCGGCGAGGGTCGTGTTGCGTGGGTTCCCTGGCGGTGCTGAGGCATTCGAGCTCGTCGCGAGGTTCTGTTACACCGGCGGCGGCGGCGGCGGCGTCGCGGTGACCGCGTCGAACGCGTGCGCGCTGCGGTGCGCGGCTGAGTTCATGGACATGGCGGCGGCGGCGGCGGAGGTGTCGACACCGCCGAGCCTGGTGAAGATGACGGAGAAGGCTCTCGACGAGATGCCGCAGTGGTCGTGGCAGAGCGTGGTGGACGCCGTGAGGCAGTGCCAGCGGCTGCTGCCGACGGCGGACGCCACGGGGGTGTTCGACCGGGTCGTCGGCGCGCTGGTGTCCCACGTGGCCGTCTCCCCCGGGGACGCCACCCCGACGAGCTCCTCGCCGGAGAGCTCGGCGTTCCGGTTCTCGTGCGACACCAAGAGCAGCTGCCTCAGCGCGCGGTGCACCAGCCGCACCTGGTGGTTCGAGGACCTCGCCGTCGTCCTCGGCCCCGGCATGGTGGAGCGCGTCGCCGGGGCGCTCCTCGCCAGGGGCACCGACCACGGCGTCGTCTCCCGGTTCCTCTTCTACTACCTCAAGTGCCGCGTCGCCGGCGCCGCCACCGCCGACGACAAGAGGGCGATGCTCGAGGCGGCGATCGCCGCCATGTCCGGCCTCGACCGGAGCTCGGTCTCCTGCAGGGGCCTCTTCGGCATCCTCCGCATCTCCTCACCGCTCAAGCTCCCCACCTCCTGCCACGACAGCCTCGTCGCCATGATCGGCGCCAAGCTCGACCACGCGACGCTCGACAACCTGCTCGTCCCGGCGCCGCCCGGGACGACGAGCAGCCTGTACGACGTCACCCTCGTCCTCCGCTTCCTGGACGCCTTCCTCCACCACGCCGCCGCCACCGGCGCGCGCGGCGAGACGCCGAGGCTGAAGAAGGTGGGCAAGCTCGTCGACCTGTACCTCGCCGAGGTCGCCCCGGACCCGTCGCTGCGCCCGGCCATGTTCGTCGAGCTCGCCACGGCGCTGCCCGCCGCGGCGAGGGACTGCCACGACGCGCTTTACCGCGCCATCGACGTCTACTTCCAGGTTCACACGCGGCTGACGGAGGAGGAGAAGATGAGGATCTGCAAGGGGATAAACTACGAGAAGCTCTCGCCGGAGTGCTGCAAGCACCTCGCCCGGAACGCCGGATTCCCGACGAGGGCGGCGGTGCAGGCGCTGGCGTCGCAGCACACGGTGCTCAAGAGCCTCCTCCGCGGCGGCGGCCCGGACGAACACCTGAGGCCGGTGTCCGCGGCGAAGCACCGCGCCGGCGGCGAGGACCACGACGACCTCGTCGCCGCCGGCGGCCAGGTCGTCCTGTACGCCGGGAGGCTCGACCTGTCGCTGGAGAGCCAGAATCTCAGGTCGCTCCTCGACGGGATGCACTGGCGGGTGATGGAGCTCGAGAAGGTGTGCAGCCGGATGAAGACGCAGATGAGCAAGATGAAGGCGGCGAGGAGAGCCACCGGAGGCGGCGGCGGCGCCGCCGCCGGCCGCCGCGCTGCTTCAAGATCACTTCCCCGGATGTGTTCTTGA More
Protein seq		MGCVLEVDVDGEEVFLVDKEVLAPFCGRIKNLGGGGAGGEGVVGAAAAARVVLRGFPGGAEAFELVARFCYTGGGGGGVAVTASNACALRCAAEFMDMAAAAAEVSTPPSLVKMTEKALDEMPQWSWQSVVDAVRQCQRLLPTADATGVFDRVVGALVSHVAVSPGDATPTSSSPESSAFRFSCDTKSSCLSARCTSRTWWFEDLAVVLGPGMVERVAGALLARGTDHGVVSRFLFYYLKCRVAGAATADDKRAMLEAAIAAMSGLDRSSVSCRGLFGILRISSPLKLPTSCHDSLVAMIGAKLDHATLDNLLVPAPPGTTSSLYDVTLVLRFLDAFLHHAAATGARGETPRLKKVGKLVDLYLAEVAPDPSLRPAMFVELATALPAAARDCHDALYRAIDVYFQVHTRLTEEEKMRICKGINYEKLSPECCKHLARNAGFPTRAAVQALASQHTVLKSLLRGGGPDEHLRPVSAAKHRAGGEDHDDLVAAGGQVVLYAGRLDLSLESQNLRSLLDGMHWRVMELEKVCSRMKTQMSKMKAARRATGGGGGAAAGRRAASRSLPRMCS
Function		BTB/POZ domain-containing protein At3g22104 [UniProtKB/Swiss-Prot:Q9C5J4]

Transcripts

Gene	Transcript	Chromosome	Start	End	Strand	Source
LOC_Os07g36230	LOC_Os07g36230.1	Chr07	21653254	21657359	+	MSU_osa1r7
CDS seq	ATGGGCTGTGTTCTTGAGGTTGATGTGGATGGTGAAGAGGTCTTCCTCGTTGATAAGGAGGTTCTTGCACCGTTCTGTGGTAGGATCAAGAATTTGGGTGGCGGCGGCGCCGGCGGCGAGGGGGTGGTCGGAGCTGCGGCGGCGGCGAGGGTCGTGTTGCGTGGGTTCCCTGGCGGTGCTGAGGCATTCGAGCTCGTCGCGAGGTTCTGTTACACCGGCGGCGGCGGCGGCGGCGTCGCGGTGACCGCGTCGAACGCGTGCGCGCTGCGGTGCGCGGCTGAGTTCATGGACATGGCGGCGGCGGCGGCGGAGGTGTCGACACCGCCGAGCCTGGTGAAGATGACGGAGAAGGCTCTCGACGAGATGCCGCAGTGGTCGTGGCAGAGCGTGGTGGACGCCGTGAGGCAGTGCCAGCGGCTGCTGCCGACGGCGGACGCCACGGGGGTGTTCGACCGGGTCGTCGGCGCGCTGGTGTCCCACGTGGCCGTCTCCCCCGGGGACGCCACCCCGACGAGCTCCTCGCCGGAGAGCTCGGCGTTCCGGTTCTCGTGCGACACCAAGAGCAGCTGCCTCAGCGCGCGGTGCACCAGCCGCACCTGGTGGTTCGAGGACCTCGCCGTCGTCCTCGGCCCCGGCATGGTGGAGCGCGTCGCCGGGGCGCTCCTCGCCAGGGGCACCGACCACGGCGTCGTCTCCCGGTTCCTCTTCTACTACCTCAAGTGCCGCGTCGCCGGCGCCGCCACCGCCGACGACAAGAGGGCGATGCTCGAGGCGGCGATCGCCGCCATGTCCGGCCTCGACCGGAGCTCGGTCTCCTGCAGGGGCCTCTTCGGCATCCTCCGCATCTCCTCACCGCTCAAGCTCCCCACCTCCTGCCACGACAGCCTCGTCGCCATGATCGGCGCCAAGCTCGACCACGCGACGCTCGACAACCTGCTCGTCCCGGCGCCGCCCGGGACGACGAGCAGCCTGTACGACGTCACCCTCGTCCTCCGCTTCCTGGACGCCTTCCTCCACCACGCCGCCGCCACCGGCGCGCGCGGCGAGACGCCGAGGCTGAAGAAGGTGGGCAAGCTCGTCGACCTGTACCTCGCCGAGGTCGCCCCGGACCCGTCGCTGCGCCCGGCCATGTTCGTCGAGCTCGCCACGGCGCTGCCCGCCGCGGCGAGGGACTGCCACGACGCGCTTTACCGCGCCATCGACGTCTACTTCCAGGTTCACACGCGGCTGACGGAGGAGGAGAAGATGAGGATCTGCAAGGGGATAAACTACGAGAAGCTCTCGCCGGAGTGCTGCAAGCACCTCGCCCGGAACGCCGGATTCCCGACGAGGGCGGCGGTGCAGGCGCTGGCGTCGCAGCACACGGTGCTCAAGAGCCTCCTCCGCGGCGGCGGCCCGGACGAACACCTGAGGCCGGTGTCCGCGGCGAAGCACCGCGCCGGCGGCGAGGACCACGACGACCTCGTCGCCGCCGGCGGCCAGGTCGTCCTGTACGCCGGGAGGCTCGACCTGTCGCTGGAGAGCCAGAATCTCAGGTCGCTCCTCGACGGGATGCACTGGCGGGTGATGGAGCTCGAGAAGGTGTGCAGCCGGATGAAGACGCAGATGAGCAAGATGAAGGCGGCGAGGAGAGCCACCGGAGGCGGCGGCGGCGCCGCCGCCGGCCGCCGCGCTGCTTCAAGATCACTTCCCCGGATGTGTTCTTGA More
Protein seq	MGCVLEVDVDGEEVFLVDKEVLAPFCGRIKNLGGGGAGGEGVVGAAAAARVVLRGFPGGAEAFELVARFCYTGGGGGGVAVTASNACALRCAAEFMDMAAAAAEVSTPPSLVKMTEKALDEMPQWSWQSVVDAVRQCQRLLPTADATGVFDRVVGALVSHVAVSPGDATPTSSSPESSAFRFSCDTKSSCLSARCTSRTWWFEDLAVVLGPGMVERVAGALLARGTDHGVVSRFLFYYLKCRVAGAATADDKRAMLEAAIAAMSGLDRSSVSCRGLFGILRISSPLKLPTSCHDSLVAMIGAKLDHATLDNLLVPAPPGTTSSLYDVTLVLRFLDAFLHHAAATGARGETPRLKKVGKLVDLYLAEVAPDPSLRPAMFVELATALPAAARDCHDALYRAIDVYFQVHTRLTEEEKMRICKGINYEKLSPECCKHLARNAGFPTRAAVQALASQHTVLKSLLRGGGPDEHLRPVSAAKHRAGGEDHDDLVAAGGQVVLYAGRLDLSLESQNLRSLLDGMHWRVMELEKVCSRMKTQMSKMKAARRATGGGGGAAAGRRAASRSLPRMCS More

Gene	Transcript	Chromosome	Start	End	Strand	Source
LOC_Os07g36230	LOC_Os07g36230.2	Chr07	21654643	21657381	+	MSU_osa1r7
CDS seq	ATGGACATGGCGGCGGCGGCGGCGGAGGTGTCGACACCGCCGAGCCTGGTGAAGATGACGGAGAAGGCTCTCGACGAGATGCCGCAGTGGTCGTGGCAGAGCGTGGTGGACGCCGTGAGGCAGTGCCAGCGGCTGCTGCCGACGGCGGACGCCACGGGGGTGTTCGACCGGGTCGTCGGCGCGCTGGTGTCCCACGTGGCCGTCTCCCCCGGGGACGCCACCCCGACGAGCTCCTCGCCGGAGAGCTCGGCGTTCCGGTTCTCGTGCGACACCAAGAGCAGCTGCCTCAGCGCGCGGTGCACCAGCCGCACCTGGTGGTTCGAGGACCTCGCCGTCGTCCTCGGCCCCGGCATGGTGGAGCGCGTCGCCGGGGCGCTCCTCGCCAGGGGCACCGACCACGGCGTCGTCTCCCGGTTCCTCTTCTACTACCTCAAGTGCCGCGTCGCCGGCGCCGCCACCGCCGACGACAAGAGGGCGATGCTCGAGGCGGCGATCGCCGCCATGTCCGGCCTCGACCGGAGCTCGGTCTCCTGCAGGGGCCTCTTCGGCATCCTCCGCATCTCCTCACCGCTCAAGCTCCCCACCTCCTGCCACGACAGCCTCGTCGCCATGATCGGCGCCAAGCTCGACCACGCGACGCTCGACAACCTGCTCGTCCCGGCGCCGCCCGGGACGACGAGCAGCCTGTACGACGTCACCCTCGTCCTCCGCTTCCTGGACGCCTTCCTCCACCACGCCGCCGCCACCGGCGCGCGCGGCGAGACGCCGAGGCTGAAGAAGGTGGGCAAGCTCGTCGACCTGTACCTCGCCGAGGTCGCCCCGGACCCGTCGCTGCGCCCGGCCATGTTCGTCGAGCTCGCCACGGCGCTGCCCGCCGCGGCGAGGGACTGCCACGACGCGCTTTACCGCGCCATCGACGTCTACTTCCAGGTTCACACGCGGCTGACGGAGGAGGAGAAGATGAGGATCTGCAAGGGGATAAACTACGAGAAGCTCTCGCCGGAGTGCTGCAAGCACCTCGCCCGGAACGCCGGATTCCCGACGAGGGCGGCGGTGCAGGCGCTGGCGTCGCAGCACACGGTGCTCAAGAGCCTCCTCCGCGGCGGCGGCCCGGACGAACACCTGAGGCCGGTGTCCGCGGCGAAGCACCGCGCCGGCGGCGAGGACCACGACGACCTCGTCGCCGCCGGCGGCCAGGTCGTCCTGTACGCCGGGAGGCTCGACCTGTCGCTGGAGAGCCAGAATCTCAGGTCGCTCCTCGACGGGATGCACTGGCGGGTGATGGAGCTCGAGAAGGTGTGCAGCCGGATGAAGACGCAGATGAGCAAGATGAAGGCGGCGAGGAGAGCCACCGGAGGCGGCGGCGGCGCCGCCGCCGGCCGCCGCGCTGCTTCAAGATCACTTCCCCGGATGTGTTCTTGA More
Protein seq	MDMAAAAAEVSTPPSLVKMTEKALDEMPQWSWQSVVDAVRQCQRLLPTADATGVFDRVVGALVSHVAVSPGDATPTSSSPESSAFRFSCDTKSSCLSARCTSRTWWFEDLAVVLGPGMVERVAGALLARGTDHGVVSRFLFYYLKCRVAGAATADDKRAMLEAAIAAMSGLDRSSVSCRGLFGILRISSPLKLPTSCHDSLVAMIGAKLDHATLDNLLVPAPPGTTSSLYDVTLVLRFLDAFLHHAAATGARGETPRLKKVGKLVDLYLAEVAPDPSLRPAMFVELATALPAAARDCHDALYRAIDVYFQVHTRLTEEEKMRICKGINYEKLSPECCKHLARNAGFPTRAAVQALASQHTVLKSLLRGGGPDEHLRPVSAAKHRAGGEDHDDLVAAGGQVVLYAGRLDLSLESQNLRSLLDGMHWRVMELEKVCSRMKTQMSKMKAARRATGGGGGAAAGRRAASRSLPRMCS More

Gene	Transcript	Chromosome	Start	End	Strand	Source
LOC_Os07g36230	LOC_Os07g36230.3	Chr07	21653722	21657359	+	MSU_osa1r7
CDS seq	ATGGACATGGCGGCGGCGGCGGCGGAGGTGTCGACACCGCCGAGCCTGGTGAAGATGACGGAGAAGGCTCTCGACGAGATGCCGCAGTGGTCGTGGCAGAGCGTGGTGGACGCCGTGAGGCAGTGCCAGCGGCTGCTGCCGACGGCGGACGCCACGGGGGTGTTCGACCGGGTCGTCGGCGCGCTGGTGTCCCACGTGGCCGTCTCCCCCGGGGACGCCACCCCGACGAGCTCCTCGCCGGAGAGCTCGGCGTTCCGGTTCTCGTGCGACACCAAGAGCAGCTGCCTCAGCGCGCGGTGCACCAGCCGCACCTGGTGGTTCGAGGACCTCGCCGTCGTCCTCGGCCCCGGCATGGTGGAGCGCGTCGCCGGGGCGCTCCTCGCCAGGGGCACCGACCACGGCGTCGTCTCCCGGTTCCTCTTCTACTACCTCAAGTGCCGCGTCGCCGGCGCCGCCACCGCCGACGACAAGAGGGCGATGCTCGAGGCGGCGATCGCCGCCATGTCCGGCCTCGACCGGAGCTCGGTCTCCTGCAGGGGCCTCTTCGGCATCCTCCGCATCTCCTCACCGCTCAAGCTCCCCACCTCCTGCCACGACAGCCTCGTCGCCATGATCGGCGCCAAGCTCGACCACGCGACGCTCGACAACCTGCTCGTCCCGGCGCCGCCCGGGACGACGAGCAGCCTGTACGACGTCACCCTCGTCCTCCGCTTCCTGGACGCCTTCCTCCACCACGCCGCCGCCACCGGCGCGCGCGGCGAGACGCCGAGGCTGAAGAAGGTGGGCAAGCTCGTCGACCTGTACCTCGCCGAGGTCGCCCCGGACCCGTCGCTGCGCCCGGCCATGTTCGTCGAGCTCGCCACGGCGCTGCCCGCCGCGGCGAGGGACTGCCACGACGCGCTTTACCGCGCCATCGACGTCTACTTCCAGGTTCACACGCGGCTGACGGAGGAGGAGAAGATGAGGATCTGCAAGGGGATAAACTACGAGAAGCTCTCGCCGGAGTGCTGCAAGCACCTCGCCCGGAACGCCGGATTCCCGACGAGGGCGGCGGTGCAGGCGCTGGCGTCGCAGCACACGGTGCTCAAGAGCCTCCTCCGCGGCGGCGGCCCGGACGAACACCTGAGGCCGGTGTCCGCGGCGAAGCACCGCGCCGGCGGCGAGGACCACGACGACCTCGTCGCCGCCGGCGGCCAGGTCGTCCTGTACGCCGGGAGGCTCGACCTGTCGCTGGAGAGCCAGAATCTCAGGTCGCTCCTCGACGGGATGCACTGGCGGGTGATGGAGCTCGAGAAGGTGTGCAGCCGGATGAAGACGCAGATGAGCAAGATGAAGGCGGCGAGGAGAGCCACCGGAGGCGGCGGCGGCGCCGCCGCCGGCCGCCGCGCTGCTTCAAGATCACTTCCCCGGATGTGTTCTTGA More
Protein seq	MDMAAAAAEVSTPPSLVKMTEKALDEMPQWSWQSVVDAVRQCQRLLPTADATGVFDRVVGALVSHVAVSPGDATPTSSSPESSAFRFSCDTKSSCLSARCTSRTWWFEDLAVVLGPGMVERVAGALLARGTDHGVVSRFLFYYLKCRVAGAATADDKRAMLEAAIAAMSGLDRSSVSCRGLFGILRISSPLKLPTSCHDSLVAMIGAKLDHATLDNLLVPAPPGTTSSLYDVTLVLRFLDAFLHHAAATGARGETPRLKKVGKLVDLYLAEVAPDPSLRPAMFVELATALPAAARDCHDALYRAIDVYFQVHTRLTEEEKMRICKGINYEKLSPECCKHLARNAGFPTRAAVQALASQHTVLKSLLRGGGPDEHLRPVSAAKHRAGGEDHDDLVAAGGQVVLYAGRLDLSLESQNLRSLLDGMHWRVMELEKVCSRMKTQMSKMKAARRATGGGGGAAAGRRAASRSLPRMCS More

Gene	Transcript	Chromosome	Start	End	Strand	Source
LOC_Os07g36230	LOC_Os07g36230.4	Chr07	21654820	21657359	+	MSU_osa1r7
CDS seq	ATGGACATGGCGGCGGCGGCGGCGGAGGTGTCGACACCGCCGAGCCTGGTGAAGATGACGGAGAAGGCTCTCGACGAGATGCCGCAGTGGTCGTGGCAGAGCGTGGTGGACGCCGTGAGGCAGTGCCAGCGGCTGCTGCCGACGGCGGACGCCACGGGGGTGTTCGACCGGGTCGTCGGCGCGCTGGTGTCCCACGTGGCCGTCTCCCCCGGGGACGCCACCCCGACGAGCTCCTCGCCGGAGAGCTCGGCGTTCCGGTTCTCGTGCGACACCAAGAGCAGCTGCCTCAGCGCGCGGTGCACCAGCCGCACCTGGTGGTTCGAGGACCTCGCCGTCGTCCTCGGCCCCGGCATGGTGGAGCGCGTCGCCGGGGCGCTCCTCGCCAGGGGCACCGACCACGGCGTCGTCTCCCGGTTCCTCTTCTACTACCTCAAGTGCCGCGTCGCCGGCGCCGCCACCGCCGACGACAAGAGGGCGATGCTCGAGGCGGCGATCGCCGCCATGTCCGGCCTCGACCGGAGCTCGGTCTCCTGCAGGGGCCTCTTCGGCATCCTCCGCATCTCCTCACCGCTCAAGCTCCCCACCTCCTGCCACGACAGCCTCGTCGCCATGATCGGCGCCAAGCTCGACCACGCGACGCTCGACAACCTGCTCGTCCCGGCGCCGCCCGGGACGACGAGCAGCCTGTACGACGTCACCCTCGTCCTCCGCTTCCTGGACGCCTTCCTCCACCACGCCGCCGCCACCGGCGCGCGCGGCGAGACGCCGAGGCTGAAGAAGGTGGGCAAGCTCGTCGACCTGTACCTCGCCGAGGTCGCCCCGGACCCGTCGCTGCGCCCGGCCATGTTCGTCGAGCTCGCCACGGCGCTGCCCGCCGCGGCGAGGGACTGCCACGACGCGCTTTACCGCGCCATCGACGTCTACTTCCAGGTTCACACGCGGCTGACGGAGGAGGAGAAGATGAGGATCTGCAAGGGGATAAACTACGAGAAGCTCTCGCCGGAGTGCTGCAAGCACCTCGCCCGGAACGCCGGATTCCCGACGAGGGCGGCGGTGCAGGCGCTGGCGTCGCAGCACACGGTGCTCAAGAGCCTCCTCCGCGGCGGCGGCCCGGACGAACACCTGAGGCCGGTGTCCGCGGCGAAGCACCGCGCCGGCGGCGAGGACCACGACGACCTCGTCGCCGCCGGCGGCCAGGTCGTCCTGTACGCCGGGAGGCTCGACCTGTCGCTGGAGAGCCAGAATCTCAGGTCGCTCCTCGACGGGATGCACTGGCGGGTGATGGAGCTCGAGAAGGTGTGCAGCCGGATGAAGACGCAGATGAGCAAGATGAAGGCGGCGAGGAGAGCCACCGGAGGCGGCGGCGGCGCCGCCGCCGGCCGCCGCGCTGCTTCAAGATCACTTCCCCGGATGTGTTCTTGA More
Protein seq	MDMAAAAAEVSTPPSLVKMTEKALDEMPQWSWQSVVDAVRQCQRLLPTADATGVFDRVVGALVSHVAVSPGDATPTSSSPESSAFRFSCDTKSSCLSARCTSRTWWFEDLAVVLGPGMVERVAGALLARGTDHGVVSRFLFYYLKCRVAGAATADDKRAMLEAAIAAMSGLDRSSVSCRGLFGILRISSPLKLPTSCHDSLVAMIGAKLDHATLDNLLVPAPPGTTSSLYDVTLVLRFLDAFLHHAAATGARGETPRLKKVGKLVDLYLAEVAPDPSLRPAMFVELATALPAAARDCHDALYRAIDVYFQVHTRLTEEEKMRICKGINYEKLSPECCKHLARNAGFPTRAAVQALASQHTVLKSLLRGGGPDEHLRPVSAAKHRAGGEDHDDLVAAGGQVVLYAGRLDLSLESQNLRSLLDGMHWRVMELEKVCSRMKTQMSKMKAARRATGGGGGAAAGRRAASRSLPRMCS More

Event Type

Chromosome

Start

End

Strand

Alternative mRNAs

Total mRNAs

Source

Expression

	Leaf	Root	Panicle
FPKM	0.384409	0.071904	0.199918

Homologues

Genome & Annotation	Homologs	Type	Expression(FPKM)
Genome & Annotation	Homologs	Type	Leaf	Root	Panicle
Nipponbare \| IRGSP 1.0 \| Gramene(+IsoSeq)	OsNip_07g0546400	RBH	0.463867	0.107503	0.420112
Nipponbare \| IRGSP 1.0 \| MSU	NA	NA	NA	NA	NA
Nipponbare \| IRGSP 1.0 \| RAP-db	Os07g0546400	RBH	None	None	None
Azucena \| AzucenaRS1 \| Gramene(+IsoSeq)	OsAzu_07g0018610	RBH	0.0	2.805842	1.086437
KETAN NANGKA \| Os128077RS1 \| Gramene(+IsoSeq)	OsKeNa_07g0018530	RBH	0.000000	0.0	0.535826
CHAO MEO \| Os132278RS1 \| Gramene(+IsoSeq)	OsCMeo_07g0018470	RBH	0.000000	6.128960	3.798020
ARC 10497 \| Os117425RS1 \| Gramene(+IsoSeq)	OsARC_07g0018370	RBH	0.048528	0.049360	None
PR 106 \| Os127742RS1 \| Gramene(+IsoSeq)	OsPr106_07g0018460	RBH	2.507303	1.479480	1.515346
Minghui 63 \| MH63RS3 \| HZAU	OsMH63_07G0353900	RBH	4.1437785	5.5615165	12.033778
IR 64 \| OsIR64RS1 \| Gramene(+IsoSeq)	OsIR64_07g0018960	RBH	0.000000	0.0	0.235346
Zhenshan 97 \| ZS97RS3 \| HZAU	OsZS97_07G0365200	RBH	4.9315995	4.447686	6.4898335
LIMA \| Os127564RS1 \| Gramene(+IsoSeq)	OsLima_07g0018240	RBH	0.035479	0.037546	None
KHAO YAI GUANG \| Os127518RS1 \| Gramene(+IsoSeq)	OsKYG_07g0018390	RBH	0.000000	0.0	None
GOBOL SAIL \| Os132424RS1 \| Gramene(+IsoSeq)	OsGoSa_07g0018240	RBH	0.0	0.0	None
LIU XU \| Os125827RS1 \| Gramene(+IsoSeq)	OsLiXu_07g0018550	RBH	0.356091	0.326430	0.196455
LARHA MUGAD \| Os125619RS1 \| Gramene(+IsoSeq)	OsLaMu_07g0018350	RBH	0.050920	3.508542	None
N22 \| OsN22RS2 \| Gramene(+IsoSeq)	OsN22_07G018230	RBH	0.000000	0.0	2.085891
NATEL BORO \| Os127652RS1 \| Gramene(+IsoSeq)	OsNaBo_07g0018330	RBH	0.000000	0.0	1.014058

Custom TreePlot

Powered by

© 2021- Rice Gene Index @Zhang Lab. All Rights Reserved.

National Key Laboratory of Crop Genetic Improvement

Huazhong Agricultural University

Any comments and suggestions, please contact us.