Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| Os07g0539300 | OGI:07058810 | 16/16 | Nipponbare | IRGSP 1.0 | RAP-db | Chr07:21238284-21241263 | ||||||||
| Gene Symbol | GNS13, Gns13, OsGns13 | ||||||||||
| DNA seq | GAATACTAACAGCAGGGTTTCATTCAACAGGAGTGAACGGTACATTTATTCGTCTCTTCAATCCCAACTAATTATTAATGGTACCATTATTTTTTTCTCTGCAGAAAAATATGAAGTGATTCTTTAATCCATCCTCACTGCCAAGCTGTTGCTGGTAAGTTTGCAGTCGATTGATCTTCAATTGCAGTTTGTTCTGTCCCAGCATTGTTTGGTGGGAGCACGCAGTTTCCTATTTCTGTAAATTATTGAACAAGCACTAATAAGATAACCACTTACTACTTGAAACAGAAGTGTGCAATTTTTCTTAGGGAATATGTACATTAGTAGCAGTAGGGCATATATATCATGCACAGTAAAATGAGAGAAAACTCACTTGGTTGCTGGTTGACAATAGAAGCAGCACCGGCAAAGTCACACGATCCACTAGCCCGGCCGGTGGTCTGGTAAAAATCGTTGAATGCATAGGTCGCGTGTGCTACCTTAGTGTCAGGATCAAAGCACCGTGCACCTGGTTGAATGGCGCTGCAGTCCGCGCAGCTACCACATGCATAGTCTAGTGCATTTTGTAGTTGTGCGTCCCCGACCTCCGATTTCGCAACGCACCAACTTGGGTTCGGATCACATATGCCTATATCTCGGGAAACAATTCACAGGACAAATAAACAATGAGATGGAATCAAGATATGAATGCACATTTGCGAAAGCCTCATTGATCTTAAAGATTGAGAGCAAAACATTACTTGGCGATGGCTTGAATACGATGGAAGCGGCGCCAGAGAAGTTGCAAGTGCCGCTGGCCTGGCCCTTGCGTTGGTAGTAGTCGTTGAATGCGTACGACGCGTGTGCAACCAAGGTGTTTGGTTCGAAACACACACTGCCCTGCCGGATAGCGCTGCAGTCCGCGCCGTTACCGCACGCAAAGTCCAATGCTGACTGCAATGCTGCACTCCCAACATCTGTTCTTGCCACACACCAACTTGTCTTTGTGGGGCAAGCTCCGCCACCGCCACCGCCCCTAAAGTCAACCTCATACACCTTCTGACCATTTGGGTAGAACAAGCCAAAGTTTCTCTCTATGGCTGGCCCAGGCTTCTCGTTTTCATTGAAAAGAGAGAAGATGTAGGCGGAGACGTCACGCATACCGGAGGCTCCGGATACTACACGTCTGATAAGCCCATTGTTGTACGCTTGGGCATCGGCTATCGTGGCTATCGAGTCCGTATCGGCTGCAGCTAGCATGGAAAATAGGGGAAATGTACCTCCAGAGGGGTGCCCTGATTCTGAAGCTTGCACACTAAGGATTCCATCTCGTCGAGCCATTGAGACCGTTAAGCTACCACCAGAAACCCTGTTTATCGCAGCATAAACAGCGTCGAGCTGAGCATCAAAGAGGCTGAAGTACCTGATGCCGGTATTGCCATCAAGCACACCAGCGTTAGGGCGGAACGTCGCGAACTCCAGAGAGATTTTGTCAGGCTGAGCCACGTATGCGAAGTACGGGTAGAGATTGACCATGAAGTACGAGCCGGTCTGTTTCAAGAAGTCAATCATGGGCTTCATCACCGATTGCGCGATCTCATCTTTAAACTCCCCCGCAGATGGAGGGGACGACTGCTTGAGCGCATCGAAGGCGATCGGCGTGGACACCTTTACGTCGTTCGCCAGGTTCAGGTTCTCCAGCGCCTTGTGCAAGTTTCGCATGGCCGAGACGAGCATCCCGGTCAGTTCGGGTCTCTGCCTGAACACCTCGTTCCCGACGGCGACGCCGTTGATCAGCGTGCCCCGGCTGCGATACGGCACCACGTTGTTCGTCACCCAGTCGGTCGCGCTGCGCAGATCCTGGCCGGCGGCGGCCAGATCGGCGTTGGGTATCGCCACCATCACCTTGATGCCGGTGTTCGCCATCGCGTCCAGCACCGTCTGGTCCGCGTCGAAGATCCTCACCGCGGAGATGCCGTTCGCCTTCAGAAGGCTCACCGCCGCCGGTGGGTCGATCAGGTTGTTCGCGTCCCTCCCGTAGCACACCCCGATCTCGCCAGCATCTGCATTGACGAGCAAGGAATTACTCCATCGTTTGGCGTTGCCGATCAGCTGCATTGGCAGGAAAGCCAGAAGCACGTTACCTGCAGCACGGGGGAGAAGGAGCAGCGGCAACGCCGCGGCCACGAGGAGGGCGTGGAGGAGGTGACTGAATGCCATGCTCTACTCTGCAACTGCACAGTGCACACCGTGGCAAGAGGCAGCGTAAATCAAGAGGGCTGATTGCTTCTTTGGAGATCCCTACATCTGGTCCATCTGGAGCAAGAAAGAAAAGAAAAACACACTTTTCAAGCTGGACATCGAAACTTTGACTCAAAATCCTCGAATATTTCTACTCGTTGTCTTGAACTTTCAGTTCGAGTCCCCAAACTTATCACACAAAAATCATAACTTTGAACTAAAATATCCAAACGTTTCTATGCAAAAGCCTCTAACTTGGAACTCGAGTATCTAAAATTTGTATTAGAACCATGAACTTCCTACTCGAATCATAACAATTCCAATTTGAATCAACAAGCTCTCACCCAAAAATCACAGCAGCAGCCAGCAGGTCCGATCTTAGAGCTGTCAAGATGGCTTCCTTGTGTCTTCCCGTCAGTTAAAGAGAAAGGGCAGTGGATCTTTGAATACGGAATGGTGCAAAGGAAAGCGAAGAACTTGGAAAGCTGAGGAGATGGAAGACGAATTGGCTAAGTCTTAAAAGATTCATGGCGTTCGGTACTAAACGTGACTAAAAAAGTATTAATTCGAGATATACCCTACATCTTTGACTAACACCCAGCTAATGTGCCGACAAAACAGAAGCTAAGTTGCAGCATAAATACTTCAGCAATAGCATCTCAACTACTCCTATTGCATTGGATACTCTTTGGTGGAACGGTTAACAAACATATTTATCGGTACAATAGAGTAACCTATGTCTCTTGATATATATGCCCAT
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| CDS seq | ATGGCATTCAGTCACCTCCTCCACGCCCTCCTCGTGGCCGCGGCGTTGCCGCTGCTCCTTCTCCCCCGTGCTGCAGATGCTGGCGAGATCGGGGTGTGCTACGGGAGGGACGCGAACAACCTGATCGACCCACCGGCGGCGGTGAGCCTTCTGAAGGCGAACGGCATCTCCGCGGTGAGGATCTTCGACGCGGACCAGACGGTGCTGGACGCGATGGCGAACACCGGCATCAAGGTGATGGTGGCGATACCCAACGCCGATCTGGCCGCCGCCGGCCAGGATCTGCGCAGCGCGACCGACTGGGTGACGAACAACGTGGTGCCGTATCGCAGCCGGGGCACGCTGATCAACGGCGTCGCCGTCGGGAACGAGGTGTTCAGGCAGAGACCCGAACTGACCGGGATGCTCGTCTCGGCCATGCGAAACTTGCACAAGGCGCTGGAGAACCTGAACCTGGCGAACGACGTAAAGGTGTCCACGCCGATCGCCTTCGATGCGCTCAAGCAGTCGTCCCCTCCATCTGCGGGGGAGTTTAAAGATGAGATCGCGCAATCGGTGATGAAGCCCATGATTGACTTCTTGAAACAGACCGGCTCGTACTTCATGGTCAATCTCTACCCGTACTTCGCATACGTGGCTCAGCCTGACAAAATCTCTCTGGAGTTCGCGACGTTCCGCCCTAACGCTGGTGTGCTTGATGGCAATACCGGCATCAGGTACTTCAGCCTCTTTGATGCTCAGCTCGACGCTGTTTATGCTGCGATAAACAGGGTTTCTGGTGGTAGCTTAACGGTCTCAATGGCTCGACGAGATGGAATCCTTAGTGTGCAAGCTTCAGAATCAGGGCACCCCTCTGGAGGTACATTTCCCCTATTTTCCATGCTAGCTGCAGCCGATACGGACTCGATAGCCACGATAGCCGATGCCCAAGCGTACAACAATGGGCTTATCAGACGTGTAGTATCCGGAGCCTCCGGTATGCGTGACGTCTCCGCCTACATCTTCTCTCTTTTCAATGAAAACGAGAAGCCTGGGCCAGCCATAGAGAGAAACTTTGGCTTGTTCTACCCAAATGGTCAGAAGGTGTATGAGGTTGACTTTAGGGGCGGTGGCGGTGGCGGAGCTTGCCCCACAAAGACAAGTTGGTGTGTGGCAAGAACAGATGTTGGGAGTGCAGCATTGCAGTCAGCATTGGACTTTGCGTGCGGTAACGGCGCGGACTGCAGCGCTATCCGGCAGGGCAGTGTGTGTTTCGAACCAAACACCTTGGTTGCACACGCGTCGTACGCATTCAACGACTACTACCAACGCAAGGGCCAGGCCAGCGGCACTTGCAACTTCTCTGGCGCCGCTTCCATCGTATTCAAGCCATCGCCAAGCATATGTGATCCGAACCCAAGTTGGTGCGTTGCGAAATCGGAGGTCGGGGACGCACAACTACAAAATGCACTAGACTATGCATGTGGTAGCTGCGCGGACTGCAGCGCCATTCAACCAGGTGCACGGTGCTTTGATCCTGACACTAAGGTAGCACACGCGACCTATGCATTCAACGATTTTTACCAGACCACCGGCCGGGCTAGTGGATCGTGTGACTTTGCCGGTGCTGCTTCTATTGTCAACCAGCAACCAAAAATAGGAAACTGCGTGCTCCCACCAAACAATGCTGGGACAGAACAAACTGCAATTGAAGATCAATCGACTGCAAACTTACCAGCAACAGCTTGGCAGTGA
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| Protein seq | MAFSHLLHALLVAAALPLLLLPRAADAGEIGVCYGRDANNLIDPPAAVSLLKANGISAVRIFDADQTVLDAMANTGIKVMVAIPNADLAAAGQDLRSATDWVTNNVVPYRSRGTLINGVAVGNEVFRQRPELTGMLVSAMRNLHKALENLNLANDVKVSTPIAFDALKQSSPPSAGEFKDEIAQSVMKPMIDFLKQTGSYFMVNLYPYFAYVAQPDKISLEFATFRPNAGVLDGNTGIRYFSLFDAQLDAVYAAINRVSGGSLTVSMARRDGILSVQASESGHPSGGTFPLFSMLAAADTDSIATIADAQAYNNGLIRRVVSGASGMRDVSAYIFSLFNENEKPGPAIERNFGLFYPNGQKVYEVDFRGGGGGGACPTKTSWCVARTDVGSAALQSALDFACGNGADCSAIRQGSVCFEPNTLVAHASYAFNDYYQRKGQASGTCNFSGAASIVFKPSPSICDPNPSWCVAKSEVGDAQLQNALDYACGSCADCSAIQPGARCFDPDTKVAHATYAFNDFYQTTGRASGSCDFAGAASIVNQQPKIGNCVLPPNNAGTEQTAIEDQSTANLPATAWQ |
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| Function | Glucan endo-1,3-beta-glucosidase 12 [UniProtKB/Swiss-Prot:Q8VYE5] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| Os07g0539300 | Os07t0539300-01 | Chr07 | 21238284 | 21241263 | - | irgsp1_rep | ||
| CDS seq | ATGGCATTCAGTCACCTCCTCCACGCCCTCCTCGTGGCCGCGGCGTTGCCGCTGCTCCTTCTCCCCCGTGCTGCAGATGCTGGCGAGATCGGGGTGTGCTACGGGAGGGACGCGAACAACCTGATCGACCCACCGGCGGCGGTGAGCCTTCTGAAGGCGAACGGCATCTCCGCGGTGAGGATCTTCGACGCGGACCAGACGGTGCTGGACGCGATGGCGAACACCGGCATCAAGGTGATGGTGGCGATACCCAACGCCGATCTGGCCGCCGCCGGCCAGGATCTGCGCAGCGCGACCGACTGGGTGACGAACAACGTGGTGCCGTATCGCAGCCGGGGCACGCTGATCAACGGCGTCGCCGTCGGGAACGAGGTGTTCAGGCAGAGACCCGAACTGACCGGGATGCTCGTCTCGGCCATGCGAAACTTGCACAAGGCGCTGGAGAACCTGAACCTGGCGAACGACGTAAAGGTGTCCACGCCGATCGCCTTCGATGCGCTCAAGCAGTCGTCCCCTCCATCTGCGGGGGAGTTTAAAGATGAGATCGCGCAATCGGTGATGAAGCCCATGATTGACTTCTTGAAACAGACCGGCTCGTACTTCATGGTCAATCTCTACCCGTACTTCGCATACGTGGCTCAGCCTGACAAAATCTCTCTGGAGTTCGCGACGTTCCGCCCTAACGCTGGTGTGCTTGATGGCAATACCGGCATCAGGTACTTCAGCCTCTTTGATGCTCAGCTCGACGCTGTTTATGCTGCGATAAACAGGGTTTCTGGTGGTAGCTTAACGGTCTCAATGGCTCGACGAGATGGAATCCTTAGTGTGCAAGCTTCAGAATCAGGGCACCCCTCTGGAGGTACATTTCCCCTATTTTCCATGCTAGCTGCAGCCGATACGGACTCGATAGCCACGATAGCCGATGCCCAAGCGTACAACAATGGGCTTATCAGACGTGTAGTATCCGGAGCCTCCGGTATGCGTGACGTCTCCGCCTACATCTTCTCTCTTTTCAATGAAAACGAGAAGCCTGGGCCAGCCATAGAGAGAAACTTTGGCTTGTTCTACCCAAATGGTCAGAAGGTGTATGAGGTTGACTTTAGGGGCGGTGGCGGTGGCGGAGCTTGCCCCACAAAGACAAGTTGGTGTGTGGCAAGAACAGATGTTGGGAGTGCAGCATTGCAGTCAGCATTGGACTTTGCGTGCGGTAACGGCGCGGACTGCAGCGCTATCCGGCAGGGCAGTGTGTGTTTCGAACCAAACACCTTGGTTGCACACGCGTCGTACGCATTCAACGACTACTACCAACGCAAGGGCCAGGCCAGCGGCACTTGCAACTTCTCTGGCGCCGCTTCCATCGTATTCAAGCCATCGCCAAGCATATGTGATCCGAACCCAAGTTGGTGCGTTGCGAAATCGGAGGTCGGGGACGCACAACTACAAAATGCACTAGACTATGCATGTGGTAGCTGCGCGGACTGCAGCGCCATTCAACCAGGTGCACGGTGCTTTGATCCTGACACTAAGGTAGCACACGCGACCTATGCATTCAACGATTTTTACCAGACCACCGGCCGGGCTAGTGGATCGTGTGACTTTGCCGGTGCTGCTTCTATTGTCAACCAGCAACCAAAAATAGGAAACTGCGTGCTCCCACCAAACAATGCTGGGACAGAACAAACTGCAATTGAAGATCAATCGACTGCAAACTTACCAGCAACAGCTTGGCAGTGA
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| Protein seq | MAFSHLLHALLVAAALPLLLLPRAADAGEIGVCYGRDANNLIDPPAAVSLLKANGISAVRIFDADQTVLDAMANTGIKVMVAIPNADLAAAGQDLRSATDWVTNNVVPYRSRGTLINGVAVGNEVFRQRPELTGMLVSAMRNLHKALENLNLANDVKVSTPIAFDALKQSSPPSAGEFKDEIAQSVMKPMIDFLKQTGSYFMVNLYPYFAYVAQPDKISLEFATFRPNAGVLDGNTGIRYFSLFDAQLDAVYAAINRVSGGSLTVSMARRDGILSVQASESGHPSGGTFPLFSMLAAADTDSIATIADAQAYNNGLIRRVVSGASGMRDVSAYIFSLFNENEKPGPAIERNFGLFYPNGQKVYEVDFRGGGGGGACPTKTSWCVARTDVGSAALQSALDFACGNGADCSAIRQGSVCFEPNTLVAHASYAFNDYYQRKGQASGTCNFSGAASIVFKPSPSICDPNPSWCVAKSEVGDAQLQNALDYACGSCADCSAIQPGARCFDPDTKVAHATYAFNDFYQTTGRASGSCDFAGAASIVNQQPKIGNCVLPPNNAGTEQTAIEDQSTANLPATAWQ
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| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| Os07g0539300 | Os07t0539300-02 | Chr07 | 21238304 | 21241013 | - | irgsp1_rep | ||
| CDS seq | ATGGCATTCAGTCACCTCCTCCACGCCCTCCTCGTGGCCGCGGCGTTGCCGCTGCTCCTTCTCCCCCGTGCTGCAGATGCTGGCGAGATCGGGGTGTGCTACGGGAGGGACGCGAACAACCTGATCGACCCACCGGCGGCGGTGAGCCTTCTGAAGGCGAACGGCATCTCCGCGGTGAGGATCTTCGACGCGGACCAGACGGTGCTGGACGCGATGGCGAACACCGGCATCAAGGTGATGGTGGCGATACCCAACGCCGATCTGGCCGCCGCCGGCCAGGATCTGCGCAGCGCGACCGACTGGGTGACGAACAACGTGGTGCCGTATCGCAGCCGGGGCACGCTGATCAACGGCGTCGCCGTCGGGAACGAGGTGTTCAGGCAGAGACCCGAACTGACCGGGATGCTCGTCTCGGCCATGCGAAACTTGCACAAGGCGCTGGAGAACCTGAACCTGGCGAACGACGTAAAGGTGTCCACGCCGATCGCCTTCGATGCGCTCAAGCAGTCGTCCCCTCCATCTGCGGGGGAGTTTAAAGATGAGATCGCGCAATCGGTGATGAAGCCCATGATTGACTTCTTGAAACAGACCGGCTCGTACTTCATGGTCAATCTCTACCCGTACTTCGCATACGTGGCTCAGCCTGACACTAAGGTAGCACACGCGACCTATGCATTCAACGATTTTTACCAGACCACCGGCCGGGCTAGTGGATCGTGTGACTTTGCCGGTGCTGCTTCTATTGTCAACCAGCAACCAAAAATAGGAAACTGCGTGCTCCCACCAAACAATGCTGGGACAGAACAAACTGCAATTGAAGATCAATCGACTGCAAACTTACCAGCAACAGCTTGGCAGTGA
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| Protein seq | MAFSHLLHALLVAAALPLLLLPRAADAGEIGVCYGRDANNLIDPPAAVSLLKANGISAVRIFDADQTVLDAMANTGIKVMVAIPNADLAAAGQDLRSATDWVTNNVVPYRSRGTLINGVAVGNEVFRQRPELTGMLVSAMRNLHKALENLNLANDVKVSTPIAFDALKQSSPPSAGEFKDEIAQSVMKPMIDFLKQTGSYFMVNLYPYFAYVAQPDTKVAHATYAFNDFYQTTGRASGSCDFAGAASIVNQQPKIGNCVLPPNNAGTEQTAIEDQSTANLPATAWQ
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | None | None | None |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_07g0539300 | RBH | 0.958898 | 1.978592 | 0.557179 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os07g35510 | RBH | 0.644396 | 1.322434 | 0.122133 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os07g0538000 | SBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_07g0018100 | RBH | 0.000000 | 487.809998 | 1.160585 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_07g0018040 | SBH | 0.555259 | 3.514833 | 0.185651 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_07g0018020 | RBH | 1.783775 | 25.033304 | 1.999873 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_07g0017910 | SBH | 0.255038 | 0.294452 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_07g0018030 | RBH | 0.0 | 0.0 | 0.0 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_07G0346100 | RBH | 5.657342 | 7.7279825 | 0.8472735 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_07g0018530 | RBH | 0.0 | 0.477779 | 0.0 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_07G0359400 | SBH | 4.826267 | 4.8051665 | 0.0461295 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_07g0017770 | RBH | 0.0 | 0.0 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_07g0017930 | SBH | 0.287123 | 6.647925 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_07g0017820 | SBH | 0.0 | 126.710030 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_07g0018110 | RBH | 0.0 | 14.956555 | 0.0 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_07g0017880 | SBH | 0.0 | 85.263474 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_07G017840 | RBH | 0.058014 | 11.307003 | 0.619336 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_07g0017830 | SBH | 2.090966 | 33.446281 | 0.0 |
