Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| Os07g0434500 | OGI:07040960 | 16/16 | Nipponbare | IRGSP 1.0 | RAP-db | Chr07:14506007-14510037 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | CAGGAAACAGTGGCATTATTTAAGTTGTTGCCGCAAGCAGGAACGGCAGAAACCATAGTTATTAATCCTGGAGATTTTCAGTAAGAAATGAGACTAGGATCAGCACGCTAACCGCTGCACCAAGCTGGCACATGTTACAAATCGGACAGTGGTTCAAAACAGGTAGGGAAATGACGGAGGTTAACGAAAAATCCTAGCATGAAGGGAACGCCGGCACTAGAAGGGGCTACTGCCACACCCTGTAGGAAGAAAAATGATATAGGTTAACGAAAAAGCATCATGGTCATACAATCAGAACAGAATAAGGAGCAAAGATTTTGTAATGTGAAGAATGATTCAAGAGAAATCCCCTTACTTCACAGCAATGATCATCCAGAAAGATCAGCATTGCATTATGTACATGGTATACAGCAGCCACATACAGCTTGTTACCTACAAGACAATTTTGGATAAGACAGAGAACACCTTCAGGGTTTAACTTGCATTATGTGCACACGGAGAAAAAGATAGCTCACCTTCTATACAAAGCCTTGATATCCTGGCGAATAGCATTAGCCTCCAATAGTTCATCTTCAGAGTCATCAATATCAACTTGATTCAGTTTGAAGTCTTCAGTAGTGCAGAGCTCACTCCATTCAAACCATAGCTTTGGTATAACTTCTTTCTTGAACGCAGTTTCATGGAACTTCACCTCTGGAGAATCAGCAGCAACAAGCCTGTACACAAACACTTTCTTCTGCTGTCCGGGCCTGAATGCACGTCCAATTGCTTGACGGGTGACAGATGGGTTCAAATGAACATCTAGAATGATGACTCTCGATGCACCAACAAGGGAGATTCCCTCTCCACAGGCCTTGATGGAACCAAACAAAACTTTTGCATCGGCAGAGTTGTTAAACTGATCCATCGCCACTTCTCTGTCGTCTGCACTAGTATCACCAGATATCATGAAAATCTCCTTCCCTACATGCCAGCCCAGCCTCTTAACCAACAACCTTTCCAAAAATTTCATGGGAAGTATATATTGACTGAAGGCAAGCAACTTCTCTCCTGCAGAGTTAGCAAGAGACAGAATGTTAAAGAAAAACTTGGCTTTCACCCCATCTTTAATGATGATAGACTCAATCAAGCTGTCAACAGTGGCATCTGTCAAGTTGGTCGCCCTATCTGCAGCATCACCCTCTGAAATTTCTGACAGGCAGGGATGAATGTACAATGCAGTCCCCACCGCACTTCTTTTGAACTTTTCATAGGCTTCTATCTTGTGAACAATTTCTTTCTGCTTGGTACTGAGTTTCAAGAACACACTAAAATCCACTAGGCCAGGTAGTTCATCTAAGATATCACCCTTGTAATAGTGAAGCACATCTTTTGTTAATTCTCTAAGACTTCTAATAACATGAGACTTTCTAGTGAAGTTGTCATCATTCAGCAGGGTGTCTTCTACTGACTCAGTGAATGCACTGTCATGAACCCCTTTTAAACTCCTGATACCTGATATTGCTACCTGACTCATTATACGTCTAGCGATAGGACGGGATGATTCCATCTTGAGAAACTTAGGGCGCACGAGGTCCAAGATGTTAAACACTTCCGAAACATGATTCTGGAAAAGTGTACCAGACAGGACCACTTTGCGTGGTGTTTGGACTCTTTTTAGTGATGCCAGTACATCTGTTTCCCGATTTCTTGGTGTATGACCCTCGTCTAGTATAAGTAGGTTGGGGACCATAAGCAGCCTGTCCCGGCACGCAGCTGCAATGTTTCCATCTCCATCACCACAGATGATTCGTGAGAACTGCTTGTATCCAAGAAATAGTATGCTCATCCGGGCTTCCCAAGATTTGAGGACTTCCAGTTGCTCTGTTCTTTTATCAGCCTTAACAGAATAGAAATCATATAGTGGTATGTCCTCCACTTGCCACCGCTGAAACTCCCTCTTCCAAGTACCTAAAATCCCTTTCGGAAGCACTACGAGGGGCCTTGCAGAAGGATACTTTGCTAAGAAGCTTTGAATGAAACTTATGAGCATAAATGTCTTCCCTGAACCAGGAGCATGAGCTAGAATACAACCTCCAGGTTTGTCTCCAACTAGATTCTTGACCAGGAAGCTGAATCCTTCCAACTGATGTGGTCTCATTTGCTTCGCATGTCTTGGATGAATGGCAATATCAGAGACAATGAAATCTTCAGAAACTTTAACAGCACCAGTATCAATATCATCAGCATCCTTTGAACGTGATTCATAGTAATTTGTTCTTGTCCTTGAAGCCTGATATAATGTAAGCATGAAGTTAACTTTCTTATCCACGTAGGAAAATCCAACAAACGTTAGAAAACTGATGCAAGCATTCCATCTTTGCTACAGGACCCATGCTCTGGATACTGCCCAGGCTCCCAGCTTAGCTCAGGTACAAGCCACTAAAGAAATCCATATGATTTGCAAAACGACTATTACTATATACTCCAAAGCGGTATCAATATCAATATAGTTGGTAATGAAAACACTCTCCCATTTTAGGAAGTATTTCAGTAAAGAGAAGATCCCCCATAGCAGGTTTTTCTACAAAAGAAACCAGAATCCCTAGATATTCATAGTGAATCTAACAAGCATTACAAAAACCATATATCAGTAATTTTCATTCAGCATGACTCCACAAATTTCTCTTGATCGTGATGCCCTTCCACTGCCTAAAGTCCTTCAAGGTACTGTGCCTTAATATTAATAGCATTTGCATAGGAGGTGAGGAAAATGGTTTTTGACATGAACACGGCAAGTGGATACGGCTGGTGTGTAGGGTCAAGTATAACCAGATCTAACTCTTGGGGCTTTAAAAGTGGACACTGTATGGGACATGAGGGGTTTCATGTAAATAATCAACTTGCAGTTTCTTTATGAAGAAAACAATTCCCAAAGTTGATTGTCTGCTTATATTAATTTCCTCAAAGTAAAACTAGAGTCTGTTATGGATTGGTTAGGTAAGGGTCCCAGGACCGGGGGATAGGGCACTCGCCCTATAATAGCAGAGGCAGGGCTTCTCCCTGCTGAGCTAAAAGAGGCTCTGAGGCTTAGGGCTAACTTTAGATTCATTGATTGATTGATACTAGAGTACATGGGGTCCCTTTACATATAGGGAGGACATACTAGACACATAAGGAACTAGTCTCTAGTATTATATAAACCAATCCAATCTCTATCTCTAACTTTCTAATAAACCTCATATCTTTCCTAACTAGATAATCTCCTATATTCATATGACTTATTCCTAATTTATCATGCCTAAACTGTTGCATGGGCCTGGCCCATTCCCATAACAGAATCATAGACATCACAGGTTTGAGAACTTTGAAGTATCATATGTCCAAAACATGGTATGTACCTTTTTCCACTGATAATCAATTATTGTTTCAGCCTTTCTAACAATCATGCCACAAATACGGCATACATGGCCTAGATCTTCATGAATCCGAATGTCATGATTGCAATCGTCATCCATCTCGTTTTCATCATCCACATCTTTTTCATTGGACATGTCTTCATTTGTATCAAGCTGGACAAAGAATATTACTTTGATCATTATTGGAAAAAGACACAAATCAGATAGAAATAATCAACTGAAATGCTTCAAAACTTTGTCAAAATACGCATTTAACTGATTTAAATGACAAATGAACGCCTTTTCAAACTCTAGCTTATCTTATAAAATACACTTTGCCATGAAACTTACTTTGTGGACAGTGGTATTCAATCTTGAAACAAAAAATAAAGATTACAGCATGTATTTCCGAGTACAATTAGAGGTCAGCTGGAAAAAGAACCAACAGTATTATAAGGCTGCAGAATAAAAGTAAAAAAGAACATCTGTGATTACATCTTGTACCTTTGTACATTCAGCAGCCAATGAAAAATCTTTCCAAAGATCCTCGAGACCATCACTTTCTTTTACAGGTTTCTCCTCTTCTATCATAGTCCTGTAGCTTTGTGAAGGAACATCATTTTGTTGCAAAGGAACAACAGTTTGTTGCAAATC
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| CDS seq | ATGATAGAAGAGGAGAAACCTGTAAAAGAAAGTGATGGTCTCGAGGATCTTTGGAAAGATTTTTCATTGGCTGCTGAATGTACAAAGCTTGATACAAATGAAGACATGTCCAATGAAAAAGATGTGGATGATGAAAACGAGATGGATGACGATTGCAATCATGACATTCGGATTCATGAAGATCTAGGCCATGTATGCCGTATTTGTGGCATGATTGTTAGAAAGGCTGAAACAATAATTGATTATCAGTGGAAAAAGGCTTCAAGGACAAGAACAAATTACTATGAATCACGTTCAAAGGATGCTGATGATATTGATACTGGTGCTGTTAAAGTTTCTGAAGATTTCATTGTCTCTGATATTGCCATTCATCCAAGACATGCGAAGCAAATGAGACCACATCAGTTGGAAGGATTCAGCTTCCTGGTCAAGAATCTAGTTGGAGACAAACCTGGAGGTTGTATTCTAGCTCATGCTCCTGGTTCAGGGAAGACATTTATGCTCATAAGTTTCATTCAAAGCTTCTTAGCAAAGTATCCTTCTGCAAGGCCCCTCGTAGTGCTTCCGAAAGGGATTTTAGGTACTTGGAAGAGGGAGTTTCAGCGGTGGCAAGTGGAGGACATACCACTATATGATTTCTATTCTGTTAAGGCTGATAAAAGAACAGAGCAACTGGAAGTCCTCAAATCTTGGGAAGCCCGGATGAGCATACTATTTCTTGGATACAAGCAGTTCTCACGAATCATCTGTGGTGATGGAGATGGAAACATTGCAGCTGCGTGCCGGGACAGGCTGCTTATGGTCCCCAACCTACTTATACTAGACGAGGGTCATACACCAAGAAATCGGGAAACAGATGTACTGGCATCACTAAAAAGAGTCCAAACACCACGCAAAGTGGTCCTGTCTGGTACACTTTTCCAGAATCATGTTTCGGAAGTGTTTAACATCTTGGACCTCGTGCGCCCTAAGTTTCTCAAGATGGAATCATCCCGTCCTATCGCTAGACGTATAATGAGTCAGGTAGCAATATCAGGTATCAGGAGTTTAAAAGGGGTTCATGACAGTGCATTCACTGAGTCAGTAGAAGACACCCTGCTGAATGATGACAACTTCACTAGAAAGTCTCATGTTATTAGAAGTCTTAGAGAATTAACAAAAGATGTGCTTCACTATTACAAGGGTGATATCTTAGATGAACTACCTGGCCTAGTGGATTTTAGTGTGTTCTTGAAACTCAGTACCAAGCAGAAAGAAATTGTTCACAAGATAGAAGCCTATGAAAAGTTCAAAAGAAGTGCGGTGGGGACTGCATTGTACATTCATCCCTGCCTGTCAGAAATTTCAGAGGGTGATGCTGCAGATAGGGCGACCAACTTGACAGATGCCACTGTTGACAGCTTGATTGAGTCTATCATCATTAAAGATGGGGTGAAAGCCAAGTTTTTCTTTAACATTCTGTCTCTTGCTAACTCTGCAGGAGAGAAGTTGCTTGCCTTCAGTCAATATATACTTCCCATGAAATTTTTGGAAAGGTTGTTGGTTAAGAGGCTGGGCTGGCATGTAGGGAAGGAGATTTTCATGATATCTGGTGATACTAGTGCAGACGACAGAGAAGTGGCGATGGATCAGTTTAACAACTCTGCCGATGCAAAAGTTTTGTTTGGTTCCATCAAGGCCTGTGGAGAGGGAATCTCCCTTGTTGGTGCATCGAGAGTCATCATTCTAGATGTTCATTTGAACCCATCTGTCACCCGTCAAGCAATTGGACGTGCATTCAGGCCCGGACAGCAGAAGAAAGTGTTTGTGTACAGGCTTGTTGCTGCTGATTCTCCAGAGGTGAAGTTCCATGAAACTGCGTTCAAGAAAGAAGTTATACCAAAGCTATGGTTTGAATGGAGTGAGCTCTGCACTACTGAAGACTTCAAACTGAATCAAGTTGATATTGATGACTCTGAAGATGAACTATTGGAGGCTAATGCTATTCGCCAGGATATCAAGGCTTTGTATAGAAGGTAA
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| Protein seq | MIEEEKPVKESDGLEDLWKDFSLAAECTKLDTNEDMSNEKDVDDENEMDDDCNHDIRIHEDLGHVCRICGMIVRKAETIIDYQWKKASRTRTNYYESRSKDADDIDTGAVKVSEDFIVSDIAIHPRHAKQMRPHQLEGFSFLVKNLVGDKPGGCILAHAPGSGKTFMLISFIQSFLAKYPSARPLVVLPKGILGTWKREFQRWQVEDIPLYDFYSVKADKRTEQLEVLKSWEARMSILFLGYKQFSRIICGDGDGNIAAACRDRLLMVPNLLILDEGHTPRNRETDVLASLKRVQTPRKVVLSGTLFQNHVSEVFNILDLVRPKFLKMESSRPIARRIMSQVAISGIRSLKGVHDSAFTESVEDTLLNDDNFTRKSHVIRSLRELTKDVLHYYKGDILDELPGLVDFSVFLKLSTKQKEIVHKIEAYEKFKRSAVGTALYIHPCLSEISEGDAADRATNLTDATVDSLIESIIIKDGVKAKFFFNILSLANSAGEKLLAFSQYILPMKFLERLLVKRLGWHVGKEIFMISGDTSADDREVAMDQFNNSADAKVLFGSIKACGEGISLVGASRVIILDVHLNPSVTRQAIGRAFRPGQQKKVFVYRLVAADSPEVKFHETAFKKEVIPKLWFEWSELCTTEDFKLNQVDIDDSEDELLEANAIRQDIKALYRR |
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| Function | Protein CHROMATIN REMODELING 35 [UniProtKB/Swiss-Prot:Q9SIW2] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| Os07g0434500 | Os07t0434500-01 | Chr07 | 14506007 | 14510037 | - | irgsp1_rep | ||
| CDS seq | ATGATAGAAGAGGAGAAACCTGTAAAAGAAAGTGATGGTCTCGAGGATCTTTGGAAAGATTTTTCATTGGCTGCTGAATGTACAAAGCTTGATACAAATGAAGACATGTCCAATGAAAAAGATGTGGATGATGAAAACGAGATGGATGACGATTGCAATCATGACATTCGGATTCATGAAGATCTAGGCCATGTATGCCGTATTTGTGGCATGATTGTTAGAAAGGCTGAAACAATAATTGATTATCAGTGGAAAAAGGCTTCAAGGACAAGAACAAATTACTATGAATCACGTTCAAAGGATGCTGATGATATTGATACTGGTGCTGTTAAAGTTTCTGAAGATTTCATTGTCTCTGATATTGCCATTCATCCAAGACATGCGAAGCAAATGAGACCACATCAGTTGGAAGGATTCAGCTTCCTGGTCAAGAATCTAGTTGGAGACAAACCTGGAGGTTGTATTCTAGCTCATGCTCCTGGTTCAGGGAAGACATTTATGCTCATAAGTTTCATTCAAAGCTTCTTAGCAAAGTATCCTTCTGCAAGGCCCCTCGTAGTGCTTCCGAAAGGGATTTTAGGTACTTGGAAGAGGGAGTTTCAGCGGTGGCAAGTGGAGGACATACCACTATATGATTTCTATTCTGTTAAGGCTGATAAAAGAACAGAGCAACTGGAAGTCCTCAAATCTTGGGAAGCCCGGATGAGCATACTATTTCTTGGATACAAGCAGTTCTCACGAATCATCTGTGGTGATGGAGATGGAAACATTGCAGCTGCGTGCCGGGACAGGCTGCTTATGGTCCCCAACCTACTTATACTAGACGAGGGTCATACACCAAGAAATCGGGAAACAGATGTACTGGCATCACTAAAAAGAGTCCAAACACCACGCAAAGTGGTCCTGTCTGGTACACTTTTCCAGAATCATGTTTCGGAAGTGTTTAACATCTTGGACCTCGTGCGCCCTAAGTTTCTCAAGATGGAATCATCCCGTCCTATCGCTAGACGTATAATGAGTCAGGTAGCAATATCAGGTATCAGGAGTTTAAAAGGGGTTCATGACAGTGCATTCACTGAGTCAGTAGAAGACACCCTGCTGAATGATGACAACTTCACTAGAAAGTCTCATGTTATTAGAAGTCTTAGAGAATTAACAAAAGATGTGCTTCACTATTACAAGGGTGATATCTTAGATGAACTACCTGGCCTAGTGGATTTTAGTGTGTTCTTGAAACTCAGTACCAAGCAGAAAGAAATTGTTCACAAGATAGAAGCCTATGAAAAGTTCAAAAGAAGTGCGGTGGGGACTGCATTGTACATTCATCCCTGCCTGTCAGAAATTTCAGAGGGTGATGCTGCAGATAGGGCGACCAACTTGACAGATGCCACTGTTGACAGCTTGATTGAGTCTATCATCATTAAAGATGGGGTGAAAGCCAAGTTTTTCTTTAACATTCTGTCTCTTGCTAACTCTGCAGGAGAGAAGTTGCTTGCCTTCAGTCAATATATACTTCCCATGAAATTTTTGGAAAGGTTGTTGGTTAAGAGGCTGGGCTGGCATGTAGGGAAGGAGATTTTCATGATATCTGGTGATACTAGTGCAGACGACAGAGAAGTGGCGATGGATCAGTTTAACAACTCTGCCGATGCAAAAGTTTTGTTTGGTTCCATCAAGGCCTGTGGAGAGGGAATCTCCCTTGTTGGTGCATCGAGAGTCATCATTCTAGATGTTCATTTGAACCCATCTGTCACCCGTCAAGCAATTGGACGTGCATTCAGGCCCGGACAGCAGAAGAAAGTGTTTGTGTACAGGCTTGTTGCTGCTGATTCTCCAGAGGTGAAGTTCCATGAAACTGCGTTCAAGAAAGAAGTTATACCAAAGCTATGGTTTGAATGGAGTGAGCTCTGCACTACTGAAGACTTCAAACTGAATCAAGTTGATATTGATGACTCTGAAGATGAACTATTGGAGGCTAATGCTATTCGCCAGGATATCAAGGCTTTGTATAGAAGGTAA
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| Protein seq | MIEEEKPVKESDGLEDLWKDFSLAAECTKLDTNEDMSNEKDVDDENEMDDDCNHDIRIHEDLGHVCRICGMIVRKAETIIDYQWKKASRTRTNYYESRSKDADDIDTGAVKVSEDFIVSDIAIHPRHAKQMRPHQLEGFSFLVKNLVGDKPGGCILAHAPGSGKTFMLISFIQSFLAKYPSARPLVVLPKGILGTWKREFQRWQVEDIPLYDFYSVKADKRTEQLEVLKSWEARMSILFLGYKQFSRIICGDGDGNIAAACRDRLLMVPNLLILDEGHTPRNRETDVLASLKRVQTPRKVVLSGTLFQNHVSEVFNILDLVRPKFLKMESSRPIARRIMSQVAISGIRSLKGVHDSAFTESVEDTLLNDDNFTRKSHVIRSLRELTKDVLHYYKGDILDELPGLVDFSVFLKLSTKQKEIVHKIEAYEKFKRSAVGTALYIHPCLSEISEGDAADRATNLTDATVDSLIESIIIKDGVKAKFFFNILSLANSAGEKLLAFSQYILPMKFLERLLVKRLGWHVGKEIFMISGDTSADDREVAMDQFNNSADAKVLFGSIKACGEGISLVGASRVIILDVHLNPSVTRQAIGRAFRPGQQKKVFVYRLVAADSPEVKFHETAFKKEVIPKLWFEWSELCTTEDFKLNQVDIDDSEDELLEANAIRQDIKALYRR
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | None | None | None |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_07g0434500 | RBH | 0.514981 | 0.347959 | 3.810807 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os07g25390 | RBH | 0.330788 | 0.222292 | 0.893509 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os06g0255700 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_07g0012500 | RBH | 0.302517 | 5.174341 | 4.475111 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_07g0012310 | RBH | 0.037728 | 1.257050 | 2.223460 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_07g0012300 | RBH | 0.766671 | 3.915031 | 8.252726 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_07g0012210 | RBH | 0.153577 | 0.219886 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_07g0012170 | RBH | 3.127262 | 5.061702 | 16.047586 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_07G0243400 | RBH | 3.366536 | 10.4417805 | 32.528056 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_07g0012660 | RBH | 0.059524 | 0.164460 | 1.728935 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_07G0247300 | RBH | 4.3166505 | 6.413232 | 17.536795 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_07g0012160 | RBH | 0.024488 | 0.107277 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_07g0012200 | RBH | 0.087302 | 1.934845 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_07g0012120 | RBH | 3.742273 | 6.149449 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_07g0012400 | RBH | 0.0 | 0.411222 | 0.828189 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_07g0012230 | RBH | 0.191833 | 3.878842 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_07G012170 | RBH | 0.108839 | 2.592635 | 2.807196 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_07g0012030 | RBH | 0.766757 | 12.412567 | 13.725542 |
