Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| Os07g0183050 | OGI:07013060 | 1/16 | Nipponbare | IRGSP 1.0 | RAP-db | Chr07:4401187-4402039 | ||||||||
| Gene Symbol | ARF20, OsARF20 | ||||||||||
| DNA seq | GGCTTGCGGCGCACCCCGACGAGCGGCTCGCCGCCGGGGCGGCGGCGCATGAAGATCACGGTGTCCCCGACGCAGAGGCGCTTGGCCTTGACGAACGCGCTCCAGCCGGCGGCGAGCGTGTGGGAGGAGGAGCGGCGGTCCGTGTCGGCGTCGCTCCAGGTGTGGCCGAACTCCCAGCGGCCGCCTTGCAGGTTCGTCACGCGGAGGTCCGGGATCCGCGGAAGGACGTGCTCGGCGGCGCTGGGCTTGGGGATCACGAAGAGGGCGCCGCTGCCGCCGCCGTTCGCCGCGGCGTCGCTCGGCGACAGCTTCTTGTCGAAGAAGCAGAACTCCCGCTGGCCTCCGACGGGGTCGCGCGCGGCGGGAAGCGGGCGGTGCGTGACGTAGCAGTCGCCCGGAAAGAGGGAAATCATGGCGTAGGAATCATCGGACTGGGCGTCGACAGCGAATCGATGCCGGTGACGGTGCAGCGTAAGCGATGGCGGTTGTCCGGGATCAGGCACGTCGTGCAGGTGTGGCATTGCTCGGCGTGGCCTTGGGGGAAGTAGTAGACCGCCGAGCCGACGACGGGGAGGCGGCCGGAGTACGGCGTGGCGCAGGCGAGCCAGATGTCGTGGTCGATGACCGGCACCATTCCCGTCGTCGTCGTCGGCGGCGGCGGCCTCGGCAGCGCCATTATCTGAACTTGCGGGGTGGCAACAATGGCATCCCGAATTCGCACAGCCGAAGTAGTTGCTGCTGGCTGAGGCTGACGCAGGACTTGCCAAGAATTAACTTGTCTGTGTATCCTGTAGGAGATCGGGGAGGCCGCTTGATCCCAATCAACCTGCACACATGCACCGATCGAGCAATT
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| CDS seq | AATTGCTCGATCGGTGCATGTGTGCAGGTTGATTGGGATCAAGCGGCCTCCCCGATCTCCTACAGGATACACAGACAAGTTAATTCTTGGCAAGTCCTGCGTCAGCCTCAGCCAGCAGCAACTACTTCGGCTGTGCGAATTCGGGATGCCATTGTTGCCACCCCGCAAGTTCAGATAATGGCGCTGCCGAGGCCGCCGCCGCCGACGACGACGACGGGAATGGTGCCGGTCATCGACCACGACATCTGGCTCGCCTGCGCCACGCCGTACTCCGGCCGCCTCCCCGTCGTCGGCTCGGCGGTCTACTACTTCCCCCAAGGCCACGCCGAGCAATGCCACACCTGCACGACGTGCCTGATCCCGGACAACCGCCATCGCTTACGCTGCACCGTCACCGGCATCGATTCGCTGTCGACGCCCAGTCCGATGATTCCTACGCCATGA
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| Protein seq | NCSIGACVQVDWDQAASPISYRIHRQVNSWQVLRQPQPAATTSAVRIRDAIVATPQVQIMALPRPPPPTTTTGMVPVIDHDIWLACATPYSGRLPVVGSAVYYFPQGHAEQCHTCTTCLIPDNRHRLRCTVTGIDSLSTPSPMIPTP |
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| Function | Putative auxin response factor 20 [UniProtKB/Swiss-Prot:A3BH85] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| Os07g0183050 | Os07t0183050-00 | Chr07 | 4401187 | 4402039 | - | irgsp1_rep | ||
| CDS seq | AATTGCTCGATCGGTGCATGTGTGCAGGTTGATTGGGATCAAGCGGCCTCCCCGATCTCCTACAGGATACACAGACAAGTTAATTCTTGGCAAGTCCTGCGTCAGCCTCAGCCAGCAGCAACTACTTCGGCTGTGCGAATTCGGGATGCCATTGTTGCCACCCCGCAAGTTCAGATAATGGCGCTGCCGAGGCCGCCGCCGCCGACGACGACGACGGGAATGGTGCCGGTCATCGACCACGACATCTGGCTCGCCTGCGCCACGCCGTACTCCGGCCGCCTCCCCGTCGTCGGCTCGGCGGTCTACTACTTCCCCCAAGGCCACGCCGAGCAATGCCACACCTGCACGACGTGCCTGATCCCGGACAACCGCCATCGCTTACGCTGCACCGTCACCGGCATCGATTCGCTGTCGACGCCCAGTCCGATGATTCCTACGCCATGA
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| Protein seq | NCSIGACVQVDWDQAASPISYRIHRQVNSWQVLRQPQPAATTSAVRIRDAIVATPQVQIMALPRPPPPTTTTGMVPVIDHDIWLACATPYSGRLPVVGSAVYYFPQGHAEQCHTCTTCLIPDNRHRLRCTVTGIDSLSTPSPMIPTP |
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | None | None | None |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_07g0183050 | RBH | 0.0 | 0.0 | 0.0 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os07g08520 | SBH | 0.0 | 0.0 | 0.0 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os07g0183100 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_07g0005230 | SBH | 0.0 | 0.0 | 0.0 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_07g0005190 | SBH | 0.0 | 0.0 | 0.0 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_07g0005100 | SBH | 0.0 | 0.0 | 0.0 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_07g0005030 | SBH | 0.0 | 0.0 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_07g0005150 | SBH | 0.0 | 0.0 | 0.0 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_07G0074200 | SBH | 0 | 0 | 0 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_07g0005670 | SBH | 0.0 | 0.0 | 0.0 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_07G0077200 | SBH | 0 | 0 | 0 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_07g0005130 | SBH | 0.0 | 0.0 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_07g0005140 | SBH | 0.0 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_07g0005180 | SBH | 0.0 | 0.0 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_07g0005260 | SBH | 0.0 | 0.0 | 0.0 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_07g0005120 | SBH | 0.0 | 0.0 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_07G005310 | SBH | 0.0 | 0.0 | 0.0 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_07g0005090 | SBH | 0.0 | 0.0 | 0.0 |
