Rice Gene Index (RGI): a comprehensive pan-genome database for comparative and functional genomics of Asian rice.

Basic Info

Gene ID		OGI # \| Score			Accession \| Assembly \| Annotation			Location		Links
OsARC_07g0005030		OGI:07013080 \| 16/16			ARC 10497 \| Os117425RS1 \| Gramene(+IsoSeq)			Chr07:4212119-4214765		Homologues MicroCollinearity RGI-JBrowse
Gene Symbol		ARF20, OsARF20
DNA seq		TTAGCCCTGTGATCCATCTCGAGGATTTACAATGCGAAACGCGGAGCCACGACTCGGGATAATTGGTGCGGATGAAGAAGAAGAGGATGCCATTGTCTGAAGTTGCAGCGCCAACGATGGAGCAGACGTGGTGGCATCTCCGGCGTGCGCAGTCGATGTGGTTGCTGCTGCCGCCTCCTCATCAGAACCCTGTGGTGGAAGAGCGAGCTGAACGGGTTGGACTTGCCAAGAATTAACTCGTCTGTTCATCGTGGGAGCGAGCGGGGAGTCACGATCCCAGTCAACCTGCAGATCGATCGAGATATACATGCAATCAGATTGATCGATCGATCGATCAAACAGCAACCCAGCAGCATGTCGAATCCTGGAAAATGGTGATCAAAGAACTGAAGAACAATTGATTTTGTCAGGCAATTATACCTCGAGCATGCGCCACTCGCTCCGGCAATGGACGTCCCTGACGGTGCCGTACACCGGTGGCTGGCTGCGGCGGCGCGCGTCGTCGGGGTTCATCAGTAAGCGCACCCTCGTCCCCGGAGCGAGCGGCGGCGAGCCTTCCACCTCCTCGCGGCGCACCACGAACTCCGCCGTGCCCTGCCATGGGCAGTAGGTCACCCTGAACGGTTGGGCGGACGACGCGTCGAGCCAGGCGTCCGCCACGTGCTTGTCGGGGATCCCGACCGGCATGCCGCCGTGCGGCTTGCGGCGCACCCCGACGAGCGGCTCGCCGCCGGGGCGGCGGCGCATGAAGATCACGGTGTCCCCGACGCAGAGGCGCTTGGCCTTGACGAACGCGCTCCAGCCGGCGGCGAGCGTGTGGGAGGAGGAGCGGCGGTCCGTGTCGGCGTCGCTCCAGGTGTGGCCGAACTCCCAGCGGCCGCCTTGCAGGTTCGTCACGCGGAGGTCCGGGATCCGCGGAAGGACGTGCTCGGCGGCGCTGGGCTTGGGGATCACGAAGAGGGCGCCGCTGCCGCCGCCGTTCGCCGCGGCGTCGCTCGGCGACAGCTTCTTGTCGAAGAAGCAGAACTCCCGCTGGCCTCCGACGGGGTCGCGCGCGGCGGGAAGCGGGCGGTGCGTGACGTAGCAGTCGCCCGGAAAGAGGGAAATCATGGCGTAGGAATCATCGGACTGGGCGTCGACAGCGAATCGATGCCGGTGACGGTGCAGCGTAAGCGATGGCGGTTGTCCGGGATCAGGCACGTCGTGCAGGTGTGGCATTGCTCGGCGTGGCCTTGGGGGAAGTAGTAGACCGCCGAGCCGACGACGGGGAGGCGGCCGGAGTACGGCGTGGCGCAGGCGAGCCAGATGTCGTGGTCGATGACCGGCACCATTCCCGTCGTCGTCGTCGGCGGCGGCGGCCTCGGCAGCGCCATTATCTGAACTTGCGGGGTGGCAACAATGGCATCCCGAATTCGCACAGCCGAAGTAGTTGCTGCTGGCTGAGGCTGACGCAGGACTTGCCAAGAATTAACTTGTCTGTGTATCCTGTAGGAGATCGGGGAGGCCGCTTGATCCCAATCAACCTGCACACATGCACCGATCGAGCAATTTCAGATCAACGATCGATCAATCATCTCAACATGCAACGATCGAATTGATCGATGAACAAATCAGATTGGGTAGGAAGGGGATGATGAGATGATGAAATTAATACCTCGAGCATGCGCCATGGGCGTAGATGGTCGAAGGTCCTGACGGTGCCCGAAATCGATTGGGCGATCTGCAGCGGGTTCATCCGCAAGTGCACCGTCGTCCCGGGAACGAAAGGGTAGAACGGCGAGAAGGAGAAGCCGATGTACTCGTCGCGCGACACCACGAACTCGAATGTGCCCTCCCGTGGGTAGTAGGTCACCTCGAACGGCGTCACGCCCTGCATCGCCAGCCACACCTCGGACACCACCTTGTTGTCTTCGACCCCGGGCCTCGGGTGGTGGCCGCCGCGCGCGCGGGGCGCGCGCCGCACCCCGACAAGCAGCTCGCCGTCGCCGTCGCCGTCGCCGCCGCCGCGGCGCATGAAGACCACGGTGTCCCTGGTGGCGAGGCGCTTGGCTTTGACGAACCCTCTCCAGCCGTCGTTGTCGTTGACGCCGAGGTCGCCGAGCATGTAGCGGCAGCGCTTCTTGTCCCAGATGTGCACGAACTCGAAGCGCTTGCCTCGCAGGTCCCTCACGTCGAAGAGCCGGGCGGTCTGGTAGGCGGCGATGTCGAGCGGCGGAAGGACGTGCTCGGCGCCGGCGGGGAGGACGAGGGCGTTGCTGGTGACGTCGGCCGGCGACAGCTGCTTCTCGAAGAAGCGGAACCCCGGCTCGCCGTGGGCGGGGACCTGGCGCCGCGCGGTCGTGTCGTCGTGGCTGCCTGGAAGGAGGGAGATGGTGGCGTACGCCTCGCCGCTCTCGGCGTCGACGTCGAGGACGAGGTCGGCAACGGTGCAGGGCACGGGGTGGATGGGGTCCGGGAGGCGGGAGAGCAGCAGCGCGGGATCCTCGGCGCACTGTTCGATGTGGCCATGGGGGATGTAGTAGACCAGTGTGCCGACGCCGGGGAGGACGCCGGAGTACGGGACGGCGCAGGCGTGCCAGACATCCCGGTCGATGACTACCGGCGGCGGGACGGCGGCGGCGGCGGCGGCGTCAGGCGGCTGCGCCAT More
CDS seq		ATGGCGCAGCCGCCTGACGCCGCCGCCGCCGCCGCCGTCCCGCCGCCGGTAGTCATCGACCGGGATGTCTGGCACGCCTGCGCCGTCCCGTACTCCGGCGTCCTCCCCGGCGTCGGCACACTGGTCTACTACATCCCCCATGGCCACATCGAACAGTGCGCCGAGGATCCCGCGCTGCTGCTCTCCCGCCTCCCGGACCCCATCCACCCCGTGCCCTGCACCGTTGCCGACCTCGTCCTCGACGTCGACGCCGAGAGCGGCGAGGCGTACGCCACCATCTCCCTCCTTCCAGGCAGCCACGACGACACGACCGCGCGGCGCCAGGTCCCCGCCCACGGCGAGCCGGGGTTCCGCTTCTTCGAGAAGCAGCTGTCGCCGGCCGACGTCACCAGCAACGCCCTCGTCCTCCCCGCCGGCGCCGAGCACGTCCTTCCGCCGCTCGACATCGCCGCCTACCAGACCGCCCGGCTCTTCGACGTGAGGGACCTGCGAGGCAAGCGCTTCGAGTTCGTGCACATCTGGGACAAGAAGCGCTGCCGCTACATGCTCGGCGACCTCGGCGTCAACGACAACGACGGCTGGAGAGGGTTCGTCAAAGCCAAGCGCCTCGCCACCAGGGACACCGTGGTCTTCATGCGCCGCGGCGGCGGCGACGGCGACGGCGACGGCGAGCTGCTTGTCGGGGTGCGGCGCGCGCCCCGCGCGCGCGGCGGCCACCACCCGAGGCCCGGGGTCGAAGACAACAAGGTGGTGTCCGAGGTGTGGCTGGCGATGCAGGGCGTGACGCCGTTCGAGGTGACCTACTACCCACGGGAGGGCACATTCGAGTTCGTGGTGTCGCGCGACGAGTACATCGGCTTCTCCTTCTCGCCGTTCTACCCTTTCGTTCCCGGGACGACGGTGCACTTGCGGATGAACCCGCTGCAGATCGCCCAATCGATTTCGGGCACCGTCAGGACCTTCGACCATCTACGCCCATGGCGCATGCTCGAGGTTGATTGGGATCAAGCGGCCTCCCCGATCTCCTACAGGATACACAGACAAGTTAATTCTTGGCAAGTCCTGCGTCAGCCTCAGCCAGCAGCAACTACTTCGGCTGTGCGAATTCGGGATGCCATTGTTGCCACCCCGCAAGTTCAGATAATGGCGCTGCCGAGGCCGCCGCCGCCGACGACGACGACGGGAATGGTGCCGGTCATCGACCACGACATCTGGCTCGCCTGCGCCACGCCGTACTCCGGCCGCCTCCCCGTCGTCGGCTCGGCGTCCGATGATTCCTACGCCATGATTTCCCTCTTTCCGGGCGACTGCTACGTCACGCACCGCCCGCTTCCCGCCGCGCGCGACCCCGTCGGAGGCCAGCGGGAGTTCTGCTTCTTCGACAAGAAGCTGTCGCCGAGCGACGCCGCGGCGAACGGCGGCGGCAGCGGCGCCCTCTTCGTGATCCCCAAGCCCAGCGCCGCCGAGCACGTCCTTCCGCGGATCCCGGACCTCCGCGTGACGAACCTGCAAGGCGGCCGCTGGGAGTTCGGCCACACCTGGAGCGACGCCGACACGGACCGCCGCTCCTCCTCCCACACGCTCGCCGCCGGCTGGAGCGCGTTCGTCAAGGCCAAGCGCCTCTGCGTCGGGGACACCGTGATCTTCATGCGCCGCCGCCCCGGCGGCGAGCCGCTCGTCGGGGTGCGCCGCAAGCCGCACGGCGGCATGCCGGTCGGGATCCCCGACAAGCACGTGGCGGACGCCTGGCTCGACGCGTCGTCCGCCCAACCGTTCAGGGTGACCTACTGCCCATGGCAGGGCACGGCGGAGTTCGTGGTGCGCCGCGAGGAGGTGGAAGGCTCGCCGCCGCTCGCTCCGGGGACGAGGGTGCGCTTACTGATGAACCCCGACGACGCGCGCCGCCGCAGCCAGCCACCGGTGTACGGCACCGTCAGGGACGTCCATTGCCGGAGCGAGTGGCGCATGCTCGAGGTTGACTGGGATCGTGACTCCCCGCTCGCTCCCACGATGAACAGACGAGTTAATTCTTGGCAAGTCCAACCCGTTCAGCTCGCTCTTCCACCACAGGGTTCTGATGAGGAGGCGGCAGCAGCAACCACATCGACTGCGCACGCCGGAGATGCCACCACGTCTGCTCCATCGTTGGCGCTGCAACTTCAGACAATGGCATCCTCTTCTTCTTCATCCGCACCAATTATCCCGAGTCGTGGCTCCGCGTTTCGCATTGTAAATCCTCGAGATGGATCACAGGGCTAA More
Protein seq		MAQPPDAAAAAAVPPPVVIDRDVWHACAVPYSGVLPGVGTLVYYIPHGHIEQCAEDPALLLSRLPDPIHPVPCTVADLVLDVDAESGEAYATISLLPGSHDDTTARRQVPAHGEPGFRFFEKQLSPADVTSNALVLPAGAEHVLPPLDIAAYQTARLFDVRDLRGKRFEFVHIWDKKRCRYMLGDLGVNDNDGWRGFVKAKRLATRDTVVFMRRGGGDGDGDGELLVGVRRAPRARGGHHPRPGVEDNKVVSEVWLAMQGVTPFEVTYYPREGTFEFVVSRDEYIGFSFSPFYPFVPGTTVHLRMNPLQIAQSISGTVRTFDHLRPWRMLEVDWDQAASPISYRIHRQVNSWQVLRQPQPAATTSAVRIRDAIVATPQVQIMALPRPPPPTTTTGMVPVIDHDIWLACATPYSGRLPVVGSASDDSYAMISLFPGDCYVTHRPLPAARDPVGGQREFCFFDKKLSPSDAAANGGGSGALFVIPKPSAAEHVLPRIPDLRVTNLQGGRWEFGHTWSDADTDRRSSSHTLAAGWSAFVKAKRLCVGDTVIFMRRRPGGEPLVGVRRKPHGGMPVGIPDKHVADAWLDASSAQPFRVTYCPWQGTAEFVVRREEVEGSPPLAPGTRVRLLMNPDDARRRSQPPVYGTVRDVHCRSEWRMLEVDWDRDSPLAPTMNRRVNSWQVQPVQLALPPQGSDEEAAAATTSTAHAGDATTSAPSLALQLQTMASSSSSSAPIIPSRGSAFRIVNPRDGSQG
Function		Putative auxin response factor 20 [UniProtKB/Swiss-Prot:A3BH85]

Transcripts

Gene	Transcript	Chromosome	Start	End	Strand	Source
OsARC_07g0005030	OsARC_07g0005030.01	Chr07	4212119	4214765	-	NAM
CDS seq	ATGGCGCAGCCGCCTGACGCCGCCGCCGCCGCCGCCGTCCCGCCGCCGGTAGTCATCGACCGGGATGTCTGGCACGCCTGCGCCGTCCCGTACTCCGGCGTCCTCCCCGGCGTCGGCACACTGGTCTACTACATCCCCCATGGCCACATCGAACAGTGCGCCGAGGATCCCGCGCTGCTGCTCTCCCGCCTCCCGGACCCCATCCACCCCGTGCCCTGCACCGTTGCCGACCTCGTCCTCGACGTCGACGCCGAGAGCGGCGAGGCGTACGCCACCATCTCCCTCCTTCCAGGCAGCCACGACGACACGACCGCGCGGCGCCAGGTCCCCGCCCACGGCGAGCCGGGGTTCCGCTTCTTCGAGAAGCAGCTGTCGCCGGCCGACGTCACCAGCAACGCCCTCGTCCTCCCCGCCGGCGCCGAGCACGTCCTTCCGCCGCTCGACATCGCCGCCTACCAGACCGCCCGGCTCTTCGACGTGAGGGACCTGCGAGGCAAGCGCTTCGAGTTCGTGCACATCTGGGACAAGAAGCGCTGCCGCTACATGCTCGGCGACCTCGGCGTCAACGACAACGACGGCTGGAGAGGGTTCGTCAAAGCCAAGCGCCTCGCCACCAGGGACACCGTGGTCTTCATGCGCCGCGGCGGCGGCGACGGCGACGGCGACGGCGAGCTGCTTGTCGGGGTGCGGCGCGCGCCCCGCGCGCGCGGCGGCCACCACCCGAGGCCCGGGGTCGAAGACAACAAGGTGGTGTCCGAGGTGTGGCTGGCGATGCAGGGCGTGACGCCGTTCGAGGTGACCTACTACCCACGGGAGGGCACATTCGAGTTCGTGGTGTCGCGCGACGAGTACATCGGCTTCTCCTTCTCGCCGTTCTACCCTTTCGTTCCCGGGACGACGGTGCACTTGCGGATGAACCCGCTGCAGATCGCCCAATCGATTTCGGGCACCGTCAGGACCTTCGACCATCTACGCCCATGGCGCATGCTCGAGGTTGATTGGGATCAAGCGGCCTCCCCGATCTCCTACAGGATACACAGACAAGTTAATTCTTGGCAAGTCCTGCGTCAGCCTCAGCCAGCAGCAACTACTTCGGCTGTGCGAATTCGGGATGCCATTGTTGCCACCCCGCAAGTTCAGATAATGGCGCTGCCGAGGCCGCCGCCGCCGACGACGACGACGGGAATGGTGCCGGTCATCGACCACGACATCTGGCTCGCCTGCGCCACGCCGTACTCCGGCCGCCTCCCCGTCGTCGGCTCGGCGTCCGATGATTCCTACGCCATGATTTCCCTCTTTCCGGGCGACTGCTACGTCACGCACCGCCCGCTTCCCGCCGCGCGCGACCCCGTCGGAGGCCAGCGGGAGTTCTGCTTCTTCGACAAGAAGCTGTCGCCGAGCGACGCCGCGGCGAACGGCGGCGGCAGCGGCGCCCTCTTCGTGATCCCCAAGCCCAGCGCCGCCGAGCACGTCCTTCCGCGGATCCCGGACCTCCGCGTGACGAACCTGCAAGGCGGCCGCTGGGAGTTCGGCCACACCTGGAGCGACGCCGACACGGACCGCCGCTCCTCCTCCCACACGCTCGCCGCCGGCTGGAGCGCGTTCGTCAAGGCCAAGCGCCTCTGCGTCGGGGACACCGTGATCTTCATGCGCCGCCGCCCCGGCGGCGAGCCGCTCGTCGGGGTGCGCCGCAAGCCGCACGGCGGCATGCCGGTCGGGATCCCCGACAAGCACGTGGCGGACGCCTGGCTCGACGCGTCGTCCGCCCAACCGTTCAGGGTGACCTACTGCCCATGGCAGGGCACGGCGGAGTTCGTGGTGCGCCGCGAGGAGGTGGAAGGCTCGCCGCCGCTCGCTCCGGGGACGAGGGTGCGCTTACTGATGAACCCCGACGACGCGCGCCGCCGCAGCCAGCCACCGGTGTACGGCACCGTCAGGGACGTCCATTGCCGGAGCGAGTGGCGCATGCTCGAGGTTGACTGGGATCGTGACTCCCCGCTCGCTCCCACGATGAACAGACGAGTTAATTCTTGGCAAGTCCAACCCGTTCAGCTCGCTCTTCCACCACAGGGTTCTGATGAGGAGGCGGCAGCAGCAACCACATCGACTGCGCACGCCGGAGATGCCACCACGTCTGCTCCATCGTTGGCGCTGCAACTTCAGACAATGGCATCCTCTTCTTCTTCATCCGCACCAATTATCCCGAGTCGTGGCTCCGCGTTTCGCATTGTAAATCCTCGAGATGGATCACAGGGCTAA More
Protein seq	MAQPPDAAAAAAVPPPVVIDRDVWHACAVPYSGVLPGVGTLVYYIPHGHIEQCAEDPALLLSRLPDPIHPVPCTVADLVLDVDAESGEAYATISLLPGSHDDTTARRQVPAHGEPGFRFFEKQLSPADVTSNALVLPAGAEHVLPPLDIAAYQTARLFDVRDLRGKRFEFVHIWDKKRCRYMLGDLGVNDNDGWRGFVKAKRLATRDTVVFMRRGGGDGDGDGELLVGVRRAPRARGGHHPRPGVEDNKVVSEVWLAMQGVTPFEVTYYPREGTFEFVVSRDEYIGFSFSPFYPFVPGTTVHLRMNPLQIAQSISGTVRTFDHLRPWRMLEVDWDQAASPISYRIHRQVNSWQVLRQPQPAATTSAVRIRDAIVATPQVQIMALPRPPPPTTTTGMVPVIDHDIWLACATPYSGRLPVVGSASDDSYAMISLFPGDCYVTHRPLPAARDPVGGQREFCFFDKKLSPSDAAANGGGSGALFVIPKPSAAEHVLPRIPDLRVTNLQGGRWEFGHTWSDADTDRRSSSHTLAAGWSAFVKAKRLCVGDTVIFMRRRPGGEPLVGVRRKPHGGMPVGIPDKHVADAWLDASSAQPFRVTYCPWQGTAEFVVRREEVEGSPPLAPGTRVRLLMNPDDARRRSQPPVYGTVRDVHCRSEWRMLEVDWDRDSPLAPTMNRRVNSWQVQPVQLALPPQGSDEEAAAATTSTAHAGDATTSAPSLALQLQTMASSSSSSAPIIPSRGSAFRIVNPRDGSQG More

Event Type

Chromosome

Start

End

Strand

Alternative mRNAs

Total mRNAs

Source

Expression

	Leaf	Root	Panicle
FPKM	0.0	0.0	None

Homologues

Genome & Annotation	Homologs	Type	Expression(FPKM)
Genome & Annotation	Homologs	Type	Leaf	Root	Panicle
Nipponbare \| IRGSP 1.0 \| Gramene(+IsoSeq)	OsNip_07g0183100	RBH	0.0	0.0	0.0
Nipponbare \| IRGSP 1.0 \| MSU	LOC_Os07g08520	RBH	0.0	0.0	0.0
Nipponbare \| IRGSP 1.0 \| RAP-db	Os07g0183100	RBH	None	None	None
Azucena \| AzucenaRS1 \| Gramene(+IsoSeq)	OsAzu_07g0005230	RBH	0.0	0.0	0.0
KETAN NANGKA \| Os128077RS1 \| Gramene(+IsoSeq)	OsKeNa_07g0005190	RBH	0.0	0.0	0.0
CHAO MEO \| Os132278RS1 \| Gramene(+IsoSeq)	OsCMeo_07g0005100	RBH	0.0	0.0	0.0
ARC 10497 \| Os117425RS1 \| Gramene(+IsoSeq)	OsARC_07g0005050	SBH	0.0	0.0	None
PR 106 \| Os127742RS1 \| Gramene(+IsoSeq)	OsPr106_07g0005150	RBH	0.0	0.0	0.0
Minghui 63 \| MH63RS3 \| HZAU	OsMH63_07G0073900	RBH	0	0	0
IR 64 \| OsIR64RS1 \| Gramene(+IsoSeq)	OsIR64_07g0005670	RBH	0.0	0.0	0.0
Zhenshan 97 \| ZS97RS3 \| HZAU	OsZS97_07G0077000	RBH	0	0	0
LIMA \| Os127564RS1 \| Gramene(+IsoSeq)	OsLima_07g0005130	RBH	0.0	0.0	None
KHAO YAI GUANG \| Os127518RS1 \| Gramene(+IsoSeq)	OsKYG_07g0005140	RBH	0.0	0.0	None
GOBOL SAIL \| Os132424RS1 \| Gramene(+IsoSeq)	OsGoSa_07g0005180	RBH	0.0	0.0	None
LIU XU \| Os125827RS1 \| Gramene(+IsoSeq)	OsLiXu_07g0005260	RBH	0.0	0.0	0.0
LARHA MUGAD \| Os125619RS1 \| Gramene(+IsoSeq)	OsLaMu_07g0005120	RBH	0.0	0.0	None
N22 \| OsN22RS2 \| Gramene(+IsoSeq)	OsN22_07G005310	RBH	0.0	0.0	0.0
NATEL BORO \| Os127652RS1 \| Gramene(+IsoSeq)	OsNaBo_07g0005090	RBH	0.0	0.0	0.0

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National Key Laboratory of Crop Genetic Improvement

Huazhong Agricultural University

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