Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| Os07g0129200 | OGI:07004540 | 16/16 | Nipponbare | IRGSP 1.0 | RAP-db | Chr07:1512025-1512958 | ||||||||
| Gene Symbol | PR1A, OsPR1a, OsPR-1a, PR1a, OsPR1#074, OsPR1-74, PR-1a, OsSCP, SCP, OsPR1, OsPR1b | ||||||||||
| DNA seq | ACACAACCATACTAGCTAGTGATCTCTCGATCTCCATCATCTCTTCGTCTACTAACAAAGTTATAATATCAAATTAAGGTATATATATATATATATAGTAGCTAGCTTCAATTAATGGCGAGTTCGTCGAGCAGGTTATCCTGCTGCTTGCTGGTGCTCGCGGCGGCGGCCATGGCGGCGACGGCGCAGAACTCGGCGCAGGACTTCGTGGACCCGCACAACGCGGCGAGGGCCGACGTCGGGGTGGGGCCGGTGAGCTGGGACGACACGGTGGCGGCGTACGCGGAGAGCTACGCGGCGCAGCGGCAGGGCGACTGCAAGCTGGAGCACTCGGACTCCGGCGGGAAGTACGGCGAGAACATCTTCTGGGGCTCCGCCGGCGGCGACTGGACGGCGGCGAGCGCCGTGTCGGCGTGGGTGTCGGAGAAGCAGTGGTACGACCACGGCAGCAACAGCTGCTCGGCGCCGGAGGGGAGCTCGTGCGGGCACTACACGCAGGTGGTGTGGCGCGACTCGACGGCGATCGGCTGCGCCCGCGTCGTCTGCGACGGCGACCTCGGCGTCTTCATCACCTGCAACTACTCGCCGCCGGGCAACTTCGTCGGCCAATCTCCCTACTGATTAATTAATTAATTATATTATCACACTCACTAATTAATCATATCGTATGCTATGCTACGTGTTTATGCATGTATGGACATGTAGTGTCATATGGTATATCGTATATGTGTACGTATAATATACGTACGTATGCTGGTGAGAATAAATCCGATGAATAAATAAATAAAGCTGTACTGTCAGCCGTATTTGCTTAGTGTATATACCGTGTATGCATTTACACTTTAGCTGTCCTTCGTGGTTACATGCATGGTCTGATGGTCATGTACATATATAGCTGGTTTTTGCTGGTTAATTAATTTGTCCTTAATTTTGA
More
|
||||||||||
| CDS seq | ATGGCGAGTTCGTCGAGCAGGTTATCCTGCTGCTTGCTGGTGCTCGCGGCGGCGGCCATGGCGGCGACGGCGCAGAACTCGGCGCAGGACTTCGTGGACCCGCACAACGCGGCGAGGGCCGACGTCGGGGTGGGGCCGGTGAGCTGGGACGACACGGTGGCGGCGTACGCGGAGAGCTACGCGGCGCAGCGGCAGGGCGACTGCAAGCTGGAGCACTCGGACTCCGGCGGGAAGTACGGCGAGAACATCTTCTGGGGCTCCGCCGGCGGCGACTGGACGGCGGCGAGCGCCGTGTCGGCGTGGGTGTCGGAGAAGCAGTGGTACGACCACGGCAGCAACAGCTGCTCGGCGCCGGAGGGGAGCTCGTGCGGGCACTACACGCAGGTGGTGTGGCGCGACTCGACGGCGATCGGCTGCGCCCGCGTCGTCTGCGACGGCGACCTCGGCGTCTTCATCACCTGCAACTACTCGCCGCCGGGCAACTTCGTCGGCCAATCTCCCTACTGA
More
|
||||||||||
| Protein seq | MASSSSRLSCCLLVLAAAAMAATAQNSAQDFVDPHNAARADVGVGPVSWDDTVAAYAESYAAQRQGDCKLEHSDSGGKYGENIFWGSAGGDWTAASAVSAWVSEKQWYDHGSNSCSAPEGSSCGHYTQVVWRDSTAIGCARVVCDGDLGVFITCNYSPPGNFVGQSPY |
||||||||||
| Function | Pathogenesis-related protein 1 [UniProtKB/Swiss-Prot:Q05968] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| Os07g0129200 | Os07t0129200-01 | Chr07 | 1512025 | 1512958 | + | irgsp1_rep | ||
| CDS seq | ATGGCGAGTTCGTCGAGCAGGTTATCCTGCTGCTTGCTGGTGCTCGCGGCGGCGGCCATGGCGGCGACGGCGCAGAACTCGGCGCAGGACTTCGTGGACCCGCACAACGCGGCGAGGGCCGACGTCGGGGTGGGGCCGGTGAGCTGGGACGACACGGTGGCGGCGTACGCGGAGAGCTACGCGGCGCAGCGGCAGGGCGACTGCAAGCTGGAGCACTCGGACTCCGGCGGGAAGTACGGCGAGAACATCTTCTGGGGCTCCGCCGGCGGCGACTGGACGGCGGCGAGCGCCGTGTCGGCGTGGGTGTCGGAGAAGCAGTGGTACGACCACGGCAGCAACAGCTGCTCGGCGCCGGAGGGGAGCTCGTGCGGGCACTACACGCAGGTGGTGTGGCGCGACTCGACGGCGATCGGCTGCGCCCGCGTCGTCTGCGACGGCGACCTCGGCGTCTTCATCACCTGCAACTACTCGCCGCCGGGCAACTTCGTCGGCCAATCTCCCTACTGA
More
|
|||||||
| Protein seq | MASSSSRLSCCLLVLAAAAMAATAQNSAQDFVDPHNAARADVGVGPVSWDDTVAAYAESYAAQRQGDCKLEHSDSGGKYGENIFWGSAGGDWTAASAVSAWVSEKQWYDHGSNSCSAPEGSSCGHYTQVVWRDSTAIGCARVVCDGDLGVFITCNYSPPGNFVGQSPY |
|||||||
| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | None | None | None |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_07g0129200 | RBH | 20.475433 | 15.962473 | 20.742544 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os07g03710 | RBH | 13.846554 | 10.736094 | 5.339535 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os07g0129300 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_07g0001810 | RBH | 0.0 | 667.583435 | 2.697793 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_07g0001810 | RBH | 0.0 | 42.178741 | 4.167984 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_07g0001690 | RBH | 0.0 | 395.574738 | 6.600452 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_07g0001690 | RBH | 0.0 | 1.088405 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_07g0001750 | RBH | 0.0 | 108.239494 | 40.411301 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_07G0026000 | RBH | 0.102754 | 4.827414 | 0.3130505 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_07g0001810 | RBH | 0.0 | 13.621264 | 2.095520 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_07G0022700 | RBH | 0.265995 | 8.0111045 | 0.276095 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_07g0001750 | SBH | 0.000000 | 0.118062 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_07g0001820 | RBH | 0.0 | 22.701403 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_07g0001800 | RBH | 0.0 | 39.938324 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_07g0001890 | RBH | 0.0 | 0.182498 | 1.414696 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_07g0001790 | SBH | 0.0 | 1.697424 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_07G001830 | RBH | 0.711452 | 0.000000 | 0.191643 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_07g0001760 | RBH | 0.0 | 45.302692 | 5.740110 |
