Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| Os07g0109100 | OGI:07001270 | 13/16 | Nipponbare | IRGSP 1.0 | RAP-db | Chr07:496582-498981 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | CTATTGATCATGGATGATGAGCTTGGCCTTGGAGTCACCGGCCAGCTCGCCGATCCGATACACGTCGCCTATCCCCATGTGCGCCATGAGGAACCATGCCATGGTGATGAGCTCGCCGCCACGGCTGAGCTGGCGCACGTGTGTGCTCCCCTGGCACTTGCCGGCCGCGTAAGTCAGCATCTCCCTCCACACTCCGGCCACCACCCTCCACATGGTGTCGTCGTCCAGCTCCCGGAGCACCTTGGCCAGGATGCAGGCGTCGAACAGCACCGACTTGCTCCGGTCGCCCTTCACATCGGCCGGCTTCTTGGACGTGTTGACGGAAAGCAGCATCCGGCGGGCGTCGTCGTGGTTGGGGTCCCACGCCTCCGCCGACTTGAAGAAGCGGCGCGCCTCGGCGCACGTGTCCCGGTAGCGGAGTAGGCCGATGCCGGCGGTGGCCGACAGCATCTCCGGTTGCCTGACGAGGAGGTAGAGCATGTACTCCGACAGGGTCTCGCTGATGGACATCAAGCCGATGGTGTCGAGCATCCGAGGCCCTTCCCGCTCTCGGTGACAGCATAGGTCAGTGGCGATGTGCCATAGCAGCAGCGACTCGTCGAACTCCCTCCCGATGCTGTTCCGCAGGACGCCATCCAGCTTCTCCTTCACCAAGTCGTCTATCTCCTTCTTCTTCTTGTCGGCCAGCTGCAGGACGTCATGTGTAATCTCCTCGGCCTCCTTCTTCTTGGTTGTTGAGCTCGAGCTCTCCTCCTCCGTAAGCCTAAGGTTGAGCTCCTCTCGTGTTGCCTTGGTCAGCTCCATCTTGATGTTTCGGAAGAGGCCCTCGTCATCCAATAGGGTCCCCTCGCCGCGGTAGCCGCGCAGCTTCTTCAAGTAGTAGTCCTCGGAGTCCCTGAATTTTATGGCCTCCCTCTGGAGACCAACGAAGACATACGCAAGGGCATCGATGGTCGTCGGCGCCCTCTCATCCCCCTCCTTGCAGTTGCACCATCGTCCCCGCCTCCCGATGACGCTCACCATCGTCACCGGCTTGCGCTGGATAAAGAAGAAGTCGTCCAAGGTCTCCCTGACGCCCACCTTGTTGGCGACCCAGATGAGGAACCGCATCACACTCGGCGGGATCGTCTTCCGCCTGCAGCACTGGCGGCGGCGACCCTCCTGCTCCTTGGGCTTGCCTAGGCAGTAGCAGATGAAGTTCAGCTGCGAGGTCCGCTCCGACCACCGCCTTGGCTGCAGCCGCACGGCCCTGGCCACCCGGGAAAGCCACGCCATGTGCTTGGCTTCGAGGAAGACGATCATCCGGTTGGAGCAGAGGAGCATGAGGATGGCGGCCACGTCGAGCGCCAGCCCGCCGAGCAGCAGCGCGTAGGTGATGCCACGGTCCACGGGGAGGATGCCGGTCTTGTCCAGGAGCACGAAGAGGACGATGGCGACGACGAGGCAGGTGGTGCAGATGAAGCGGAGGACGCAGCCTGCCGAGCTGTGGGACACGGGCGCCTTGGTGTACACCATGTCGTAGAGGTAGTTGAGCTCTATCTCCATCACCTCGAACGCCTTGTCCGCCGTCATGTCGCGGCGGTCCAGGAAGTAGGCCTGGCTGATCCTCCTCTCCTTGTAGCTGAGGTTGATGTCGACGTACAGCACCCGGAACATGGTGAAGAACTCGTACGCTATTGCCTCCAGGCTTTTGGTCGTCTCCACCAGCCGAACCTCACTGCCCTGCTGCAACACCTCCTTGGCCTTGCTGGCCTCGCCGTTGGCAATGGTGATCTCGACGAGAAGGCCGCCATTCCGCTTGCCGCCAAACACGGTCATGAGCTTGGCGTAGTTAGGGCCAGGATCAGGGGCCCGGAAGATTTTGGCGATGACACCGTCCACACTGCCGGAGTAGAGCGAGTAGGTGCGCTCGCCGTACTTGATGACGCCGACGACGAAGATGAGGGCGGTGGCCGGGATCATGGGGTTGCTCCTGATGGAGCAGGAGAAGACGACCAAGGCGGAGAAGAGCTCGAAGAGCAAGCCAATGAGGTGGCGGCGCCAGAGCTCGTTGTCGTCGACGGAGTAGGCGGTCATGGTGTCGGGGCCGCCCAGGTGGAGCAGGAGGAACGGCGTCCAGAAGGCGAAGATGGGCGGGCCGCCGCCGGCACCGGCAGAGAGGTGGCTGCTGCTGCTGCCGATGTTGCCGAGGTTGTTGAGGAGGAGGCCGAGGGCGAGGTCGGCGACCCAGTCGGCGAGGAGGTAGCATGCCCAGATGGCGAAGCACGGGACAGGGTGGGAGGTGCGCTTGCGCATGGGCCCCACGAAGATGAGGATGACCTGAAGGAGGAGGCTGAGCAGCACAGCCACCCGGATCTCCCACTCGCTGTCCTTCTGCGGCACCGGCGGATTGAAACCCAT
More
|
||||||||||
| CDS seq | ATGGGTTTCAATCCGCCGGTGCCGCAGAAGGACAGCGAGTGGGAGATCCGGGTGGCTGTGCTGCTCAGCCTCCTCCTTCAGGTCATCCTCATCTTCGTGGGGCCCATGCGCAAGCGCACCTCCCACCCTGTCCCGTGCTTCGCCATCTGGGCATGCTACCTCCTCGCCGACTGGGTCGCCGACCTCGCCCTCGGCCTCCTCCTCAACAACCTCGGCAACATCGGCAGCAGCAGCAGCCACCTCTCTGCCGGTGCCGGCGGCGGCCCGCCCATCTTCGCCTTCTGGACGCCGTTCCTCCTGCTCCACCTGGGCGGCCCCGACACCATGACCGCCTACTCCGTCGACGACAACGAGCTCTGGCGCCGCCACCTCATTGGCTTGCTCTTCGAGCTCTTCTCCGCCTTGGTCGTCTTCTCCTGCTCCATCAGGAGCAACCCCATGATCCCGGCCACCGCCCTCATCTTCGTCGTCGGCGTCATCAAGTACGGCGAGCGCACCTACTCGCTCTACTCCGGCAGTGTGGACGGTGTCATCGCCAAAATCTTCCGGGCCCCTGATCCTGGCCCTAACTACGCCAAGCTCATGACCGTGTTTGGCGGCAAGCGGAATGGCGGCCTTCTCGTCGAGATCACCATTGCCAACGGCGAGGCCAGCAAGGCCAAGGAGGTGTTGCAGCAGGGCAGTGAGGTTCGGCTGGTGGAGACGACCAAAAGCCTGGAGGCAATAGCGTACGAGTTCTTCACCATGTTCCGGGTGCTGTACGTCGACATCAACCTCAGCTACAAGGAGAGGAGGATCAGCCAGGCCTACTTCCTGGACCGCCGCGACATGACGGCGGACAAGGCGTTCGAGGTGATGGAGATAGAGCTCAACTACCTCTACGACATGGTGTACACCAAGGCGCCCGTGTCCCACAGCTCGGCAGGCTGCGTCCTCCGCTTCATCTGCACCACCTGCCTCGTCGTCGCCATCGTCCTCTTCGTGCTCCTGGACAAGACCGGCATCCTCCCCGTGGACCGTGGCATCACCTACGCGCTGCTGCTCGGCGGGCTGGCGCTCGACGTGGCCGCCATCCTCATGCTCCTCTGCTCCAACCGGATGATCGTCTTCCTCGAAGCCAAGCACATGGCGTGGCTTTCCCGGGTGGCCAGGGCCGTGCGGCTGCAGCCAAGGCGGTGGTCGGAGCGGACCTCGCAGCTGAACTTCATCTGCTACTGCCTAGGCAAGCCCAAGGAGCAGGAGGGTCGCCGCCGCCAGTGCTGCAGGCGGAAGACGATCCCGCCGAGTGTGATGCGGTTCCTCATCTGGGTCGCCAACAAGGTGGGCGTCAGGGAGACCTTGGACGACTTCTTCTTTATCCAGCGCAAGCCGGTGACGATGGTGAGCGTCATCGGGAGGCGGGGACGATGGTGCAACTGCAAGGAGGGGGATGAGAGGGCGCCGACGACCATCGATGCCCTTGCGTATGTCTTCGTTGGTCTCCAGAGGGAGGCCATAAAATTCAGGGACTCCGAGGACTACTACTTGAAGAAGCTGCGCGGCTACCGCGGCGAGGGGACCCTATTGGATGACGAGGGCCTCTTCCGAAACATCAAGATGGAGCTGACCAAGGCAACACGAGAGGAGCTCAACCTTAGGCTTACGGAGGAGGAGAGCTCGAGCTCAACAACCAAGAAGAAGGAGGCCGAGGAGATTACACATGACGTCCTGCAGCTGGCCGACAAGAAGAAGAAGGAGATAGACGACTTGGTGAAGGAGAAGCTGGATGGCGTCCTGCGGAACAGCATCGGGAGGGAGTTCGACGAGTCGCTGCTGCTATGGCACATCGCCACTGACCTATGCTGTCACCGAGAGCGGGAAGGGCCTCGGATGCTCGACACCATCGGCTTGATGTCCATCAGCGAGACCCTGTCGGAGTACATGCTCTACCTCCTCGTCAGGCAACCGGAGATGCTGTCGGCCACCGCCGGCATCGGCCTACTCCGCTACCGGGACACGTGCGCCGAGGCGCGCCGCTTCTTCAAGTCGGCGGAGGCGTGGGACCCCAACCACGACGACGCCCGCCGGATGCTGCTTTCCGTCAACACGTCCAAGAAGCCGGCCGATGTGAAGGGCGACCGGAGCAAGTCGGTGCTGTTCGACGCCTGCATCCTGGCCAAGGTGCTCCGGGAGCTGGACGACGACACCATGTGGAGGGTGGTGGCCGGAGTGTGGAGGGAGATGCTGACTTACGCGGCCGGCAAGTGCCAGGGGAGCACACACGTGCGCCAGCTCAGCCGTGGCGGCGAGCTCATCACCATGGCATGGTTCCTCATGGCGCACATGGGGATAGGCGACGTGTATCGGATCGGCGAGCTGGCCGGTGACTCCAAGGCCAAGCTCATCATCCATGATCAATAG
More
|
||||||||||
| Protein seq | MGFNPPVPQKDSEWEIRVAVLLSLLLQVILIFVGPMRKRTSHPVPCFAIWACYLLADWVADLALGLLLNNLGNIGSSSSHLSAGAGGGPPIFAFWTPFLLLHLGGPDTMTAYSVDDNELWRRHLIGLLFELFSALVVFSCSIRSNPMIPATALIFVVGVIKYGERTYSLYSGSVDGVIAKIFRAPDPGPNYAKLMTVFGGKRNGGLLVEITIANGEASKAKEVLQQGSEVRLVETTKSLEAIAYEFFTMFRVLYVDINLSYKERRISQAYFLDRRDMTADKAFEVMEIELNYLYDMVYTKAPVSHSSAGCVLRFICTTCLVVAIVLFVLLDKTGILPVDRGITYALLLGGLALDVAAILMLLCSNRMIVFLEAKHMAWLSRVARAVRLQPRRWSERTSQLNFICYCLGKPKEQEGRRRQCCRRKTIPPSVMRFLIWVANKVGVRETLDDFFFIQRKPVTMVSVIGRRGRWCNCKEGDERAPTTIDALAYVFVGLQREAIKFRDSEDYYLKKLRGYRGEGTLLDDEGLFRNIKMELTKATREELNLRLTEEESSSSTTKKKEAEEITHDVLQLADKKKKEIDDLVKEKLDGVLRNSIGREFDESLLLWHIATDLCCHREREGPRMLDTIGLMSISETLSEYMLYLLVRQPEMLSATAGIGLLRYRDTCAEARRFFKSAEAWDPNHDDARRMLLSVNTSKKPADVKGDRSKSVLFDACILAKVLRELDDDTMWRVVAGVWREMLTYAAGKCQGSTHVRQLSRGGELITMAWFLMAHMGIGDVYRIGELAGDSKAKLIIHDQ |
||||||||||
| Function | - | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| Os07g0109100 | Os07t0109100-00 | Chr07 | 496582 | 498981 | - | irgsp1_rep | ||
| CDS seq | ATGGGTTTCAATCCGCCGGTGCCGCAGAAGGACAGCGAGTGGGAGATCCGGGTGGCTGTGCTGCTCAGCCTCCTCCTTCAGGTCATCCTCATCTTCGTGGGGCCCATGCGCAAGCGCACCTCCCACCCTGTCCCGTGCTTCGCCATCTGGGCATGCTACCTCCTCGCCGACTGGGTCGCCGACCTCGCCCTCGGCCTCCTCCTCAACAACCTCGGCAACATCGGCAGCAGCAGCAGCCACCTCTCTGCCGGTGCCGGCGGCGGCCCGCCCATCTTCGCCTTCTGGACGCCGTTCCTCCTGCTCCACCTGGGCGGCCCCGACACCATGACCGCCTACTCCGTCGACGACAACGAGCTCTGGCGCCGCCACCTCATTGGCTTGCTCTTCGAGCTCTTCTCCGCCTTGGTCGTCTTCTCCTGCTCCATCAGGAGCAACCCCATGATCCCGGCCACCGCCCTCATCTTCGTCGTCGGCGTCATCAAGTACGGCGAGCGCACCTACTCGCTCTACTCCGGCAGTGTGGACGGTGTCATCGCCAAAATCTTCCGGGCCCCTGATCCTGGCCCTAACTACGCCAAGCTCATGACCGTGTTTGGCGGCAAGCGGAATGGCGGCCTTCTCGTCGAGATCACCATTGCCAACGGCGAGGCCAGCAAGGCCAAGGAGGTGTTGCAGCAGGGCAGTGAGGTTCGGCTGGTGGAGACGACCAAAAGCCTGGAGGCAATAGCGTACGAGTTCTTCACCATGTTCCGGGTGCTGTACGTCGACATCAACCTCAGCTACAAGGAGAGGAGGATCAGCCAGGCCTACTTCCTGGACCGCCGCGACATGACGGCGGACAAGGCGTTCGAGGTGATGGAGATAGAGCTCAACTACCTCTACGACATGGTGTACACCAAGGCGCCCGTGTCCCACAGCTCGGCAGGCTGCGTCCTCCGCTTCATCTGCACCACCTGCCTCGTCGTCGCCATCGTCCTCTTCGTGCTCCTGGACAAGACCGGCATCCTCCCCGTGGACCGTGGCATCACCTACGCGCTGCTGCTCGGCGGGCTGGCGCTCGACGTGGCCGCCATCCTCATGCTCCTCTGCTCCAACCGGATGATCGTCTTCCTCGAAGCCAAGCACATGGCGTGGCTTTCCCGGGTGGCCAGGGCCGTGCGGCTGCAGCCAAGGCGGTGGTCGGAGCGGACCTCGCAGCTGAACTTCATCTGCTACTGCCTAGGCAAGCCCAAGGAGCAGGAGGGTCGCCGCCGCCAGTGCTGCAGGCGGAAGACGATCCCGCCGAGTGTGATGCGGTTCCTCATCTGGGTCGCCAACAAGGTGGGCGTCAGGGAGACCTTGGACGACTTCTTCTTTATCCAGCGCAAGCCGGTGACGATGGTGAGCGTCATCGGGAGGCGGGGACGATGGTGCAACTGCAAGGAGGGGGATGAGAGGGCGCCGACGACCATCGATGCCCTTGCGTATGTCTTCGTTGGTCTCCAGAGGGAGGCCATAAAATTCAGGGACTCCGAGGACTACTACTTGAAGAAGCTGCGCGGCTACCGCGGCGAGGGGACCCTATTGGATGACGAGGGCCTCTTCCGAAACATCAAGATGGAGCTGACCAAGGCAACACGAGAGGAGCTCAACCTTAGGCTTACGGAGGAGGAGAGCTCGAGCTCAACAACCAAGAAGAAGGAGGCCGAGGAGATTACACATGACGTCCTGCAGCTGGCCGACAAGAAGAAGAAGGAGATAGACGACTTGGTGAAGGAGAAGCTGGATGGCGTCCTGCGGAACAGCATCGGGAGGGAGTTCGACGAGTCGCTGCTGCTATGGCACATCGCCACTGACCTATGCTGTCACCGAGAGCGGGAAGGGCCTCGGATGCTCGACACCATCGGCTTGATGTCCATCAGCGAGACCCTGTCGGAGTACATGCTCTACCTCCTCGTCAGGCAACCGGAGATGCTGTCGGCCACCGCCGGCATCGGCCTACTCCGCTACCGGGACACGTGCGCCGAGGCGCGCCGCTTCTTCAAGTCGGCGGAGGCGTGGGACCCCAACCACGACGACGCCCGCCGGATGCTGCTTTCCGTCAACACGTCCAAGAAGCCGGCCGATGTGAAGGGCGACCGGAGCAAGTCGGTGCTGTTCGACGCCTGCATCCTGGCCAAGGTGCTCCGGGAGCTGGACGACGACACCATGTGGAGGGTGGTGGCCGGAGTGTGGAGGGAGATGCTGACTTACGCGGCCGGCAAGTGCCAGGGGAGCACACACGTGCGCCAGCTCAGCCGTGGCGGCGAGCTCATCACCATGGCATGGTTCCTCATGGCGCACATGGGGATAGGCGACGTGTATCGGATCGGCGAGCTGGCCGGTGACTCCAAGGCCAAGCTCATCATCCATGATCAATAG
More
|
|||||||
| Protein seq | MGFNPPVPQKDSEWEIRVAVLLSLLLQVILIFVGPMRKRTSHPVPCFAIWACYLLADWVADLALGLLLNNLGNIGSSSSHLSAGAGGGPPIFAFWTPFLLLHLGGPDTMTAYSVDDNELWRRHLIGLLFELFSALVVFSCSIRSNPMIPATALIFVVGVIKYGERTYSLYSGSVDGVIAKIFRAPDPGPNYAKLMTVFGGKRNGGLLVEITIANGEASKAKEVLQQGSEVRLVETTKSLEAIAYEFFTMFRVLYVDINLSYKERRISQAYFLDRRDMTADKAFEVMEIELNYLYDMVYTKAPVSHSSAGCVLRFICTTCLVVAIVLFVLLDKTGILPVDRGITYALLLGGLALDVAAILMLLCSNRMIVFLEAKHMAWLSRVARAVRLQPRRWSERTSQLNFICYCLGKPKEQEGRRRQCCRRKTIPPSVMRFLIWVANKVGVRETLDDFFFIQRKPVTMVSVIGRRGRWCNCKEGDERAPTTIDALAYVFVGLQREAIKFRDSEDYYLKKLRGYRGEGTLLDDEGLFRNIKMELTKATREELNLRLTEEESSSSTTKKKEAEEITHDVLQLADKKKKEIDDLVKEKLDGVLRNSIGREFDESLLLWHIATDLCCHREREGPRMLDTIGLMSISETLSEYMLYLLVRQPEMLSATAGIGLLRYRDTCAEARRFFKSAEAWDPNHDDARRMLLSVNTSKKPADVKGDRSKSVLFDACILAKVLRELDDDTMWRVVAGVWREMLTYAAGKCQGSTHVRQLSRGGELITMAWFLMAHMGIGDVYRIGELAGDSKAKLIIHDQ
More
|
|||||||
| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | None | None | None |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_07g0109100 | RBH | 0.0 | 0.0 | 0.0 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os07g01840 | RBH | 0.0 | 0.0 | 0.0 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os07g0105800 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_07g0000570 | RBH | 0.0 | 0.0 | 0.253582 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_07g0000620 | RBH | 0.0 | 0.429992 | 0.0 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_07g0000550 | RBH | 0.0 | 0.0 | 0.0 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_07g0000550 | RBH | 0.0 | 0.028193 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_07g0000570 | RBH | 0.0 | 4.137484 | 0.452123 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_07G0008100 | RBH | 0.3455485 | 0.0364665 | 0.241305 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_07g0000560 | RBH | 0.0 | 0.106818 | 0.0 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_07G0003700 | SBH | 1.0403075 | 0 | 0.1438135 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_07g0000580 | RBH | 0.0 | 0.0 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_07g0000600 | RBH | 0.0 | 1.202163 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_07g0000600 | SBH | 0.000000 | 12.585883 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_07g0000630 | SBH | 0.0 | 0.000000 | 0.0 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_07g0000600 | RBH | 0.0 | 0.0 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_07G000600 | RBH | 0.0 | 0.0 | 0.000000 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_07g0000610 | RBH | 0.0 | 0.0 | 0.0 |
