Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsLiXu_07g0000630 | OGI:07000750 | 16/16 | LIU XU | Os125827RS1 | Gramene(+IsoSeq) | Chr07:441436-443914 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | ttatttcttgtgaagattggacgtcgatgagctattgatcatggatgatgagcttggccttggagtcaccggccacttgccgatccgatacacgtcgcctatccccatgtgcgccatgaggaaccatgcatggtgatgagctcgccgccacggctgagctggcgcacgtgtgtgctcccctggcacttgccggccgcgtaagtcagcatctccctccacactccggccaccaccacggctgagctggcgcacgtgtgtgctcccctggcacttgccggccgcgtaagtcagcatctccctccacactccggccaccaccctccacatggtgtcgtagtccagctcccagagcaccttggccaggatgcaggagtcgaacagcaccgacttgctccggtcgcccttcacatccgccggcttcttggacgtgttgacggaaagcagcatccggcgggcgtcgtcgtggttggggtcccacgcctccgccgacttgaagaagcggcgcgcctcggcgcacgtgtcccggtagcggagtaggccgatgccggcggtggccgacagcatctccggttgcctgacgaggaggtagagcatgtactccgacagggtctcgctgatggacatcaagccgttggtgtcgtgcatctgagtaggccctttccgctctcggtgacagcataggtcagtggcgatgtgccatagcagcagcgactcgtcgaactccctctcgatgctgttccgcaggacgccatccagcttctccttcaccatcttctcgaccaagtactcggactcgtccatctcctcctccttgttggttgatgagctattatccttcttgttgagctccacctttcgtgttgccttggtcagctccatcttgatgactgtgacaagctcctcgtcatccacgagggtcccctcgccgcggtagccgcacagcttcttcatcaagccgtagtccgtggagcccttgatttttgggcctccttcttaagcctatcgaagacatacgtgagcacgtcgacgtgcggcttctcctccttgtgccagcagcacaagtgattcatcttgttgttgttgttgtcgatgtgactgcagctcaccggcttgcgctggatgaagaagaagtagtccaacaaggtctccctgacgatcaccttgtcggcgacccagatgaggaaccgcatcacactcggcgggatcgtcttcctcctgcagcagtggcggcgaccctcctgctccttgggcttgcgtaggcagtagcagatgaggttcagctgcgaggtccgctccgaccaccgctttgtccgcggccgcacggccctggccacccgggaaagccacgccatgtgcttggcttcgaggaagacgatcatccggttggagcagaggagcatgaggatggcggccacgtcgagcgccagcccgccgagcagcagcgcgtaggtgatggcacggtccacggggaggatggcggtcttgtcgaggagcgcgaagaggaggatggcgatgacgaggcaggcggtgccgacgcagcggaggacgcagcctgtgaagctgtgggacacgagcgccttggtgtacaccatgtcgtagatgaagttgagctccacctccaccacctcgaacgccttgcccgccgtcatgtcgtggcggtccaggaagtaggcctggctgatcctcctctccttgtagctgaggatgaggttgacgaagagcagccggaacatggtgaagaagtcgtacgccatcgcctccaggctcttgttgctctccttcaccagccgaacctcctcgccctcctccagcgcctccttcgccttgctggcctcgccgtccgcgatggtgatctccaccagcagtccggctttcttcttggagtcgaactccgtcatgagcttggcgtagttgggcccagggttgggttcgccgaggatcttgtcgcggaagccggagacgctgccggagtagagagagtaggtgcgctcgccgtacttgatgacgccgacgaggaagatgagggcggtggcgggaccatggggttgctcctgatggagcaggagaagacgaccaaggcggagaagagctcgaagagcaagccaatgaggtggcggagccagagctcgttgtcgtcgacggagtaggcggtgatggtgtcggggccgcccaggtggagcaggaggaacggcgtccagaaggcgaagatgggcgggccgccgccggcaccggcagagaggtggctgctgctgctgccgatgttgccgaggttgttgaggaggaggccgagggcgaggtcggcgacccagtcggcgaggaggtagcacgaccagacggcgatgtgcgggacatgttgggagaagcgcttgcgcatgggccccacgaagatgaggatgacctgaaggaggaggctgagcagcacagccacccggatctcccagtcgctgtcattctgcggcaccggcggattgaaacccat
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| CDS seq | atgggtttcaatccgccggtgccgcagaatgacagcgactgggagatccgggtggctgtgctgctcagcctcctccttcaggtcatcctcatcttcgtggggcccatgcgcaagcgcttctcccaacatgtcccgcacatcgccgtctggtcgtgctacctcctcgccgactgggtcgccgacctcgccctcggcctcctcctcaacaacctcggcaacatcggcagcagcagcagccacctctctgccggtgccggcggcggcccgcccatcttcgccttctggacgccgttcctcctgctccacctgggcggccccgacaccatcaccgcctactccgtcgacgacaacgagctctggctccgccacctcattggcttgctcttcgagctcttctccgccttggtcgtcttctcctgctccatcaggagcaaccccatgtacggcgagcgcacctactctctctactccggcagcgtctccggcttccgcgacaagatcctcggcgaacccaaccctgggcccaactacgccaagctcatgacggagttcgactccaagaagaaagccggactgctggtggagatcaccatcgcggacggcgaggccagcaaggcgaaggaggcgctggaggagggcgaggaggttcggctggtgaaggagagcaacaagagcctggaggcgatggcgtacgacttcttcaccatgttccggctgctcttcgtcaacctcatcctcagctacaaggagaggaggatcagccaggcctacttcctggaccgccacgacatgacggcgggcaaggcgttcgaggtggtggaggtggagctcaacttcatctacgacatggtgtacaccaaggcgctcgtgtcccacagcttcacaggctgcgtcctccgctgcgtcggcaccgcctgcctcgtcatcgccatcctcctcttcgcgctcctcgacaagaccgccatcctccccgtggaccgtgccatcacctacgcgctgctgctcggcgggctggcgctcgacgtggccgccatcctcatgctcctctgctccaaccggatgatcgtcttcctcgaagccaagcacatggcgtggctttcccgggtggccagggccgtgcggccgcggacaaagcggtggtcggagcggacctcgcagctgaacctcatctgctactgcctacgcaagcccaaggagcaggagggtcgccgccactgctgcaggaggaagacgatcccgccgagtgtgatgcggttcctcatctgggtcgccgacaaggtgatcgtcagggagaccttgttggactacttcttcttcatccagcgcaagccgggctccacggactacggcttgatgaagaagctgtgcggctaccgcggcgaggggaccctcgtggatgacgaggagcttgtcacagtcatcaagatggagctgaccaaggcaacacgaaaggtggagctcaacaagaaggataatagctcatcaaccaacaaggaggaggagatggacgagtccgagtacttggtcgagaagatggtgaaggagaagctggatggcgtcctgcggaacagcatcgagagggagttcgacgagtcgctgctgctatggcacatcgccactgacctatgctgtcaccgagagcggaaagggcctactcagatgcacgacaccaacggcttgatgtccatcagcgagaccctgtcggagtacatgctctacctcctcgtcaggcaaccggagatgctgtcggccaccgccggcatcggcctactccgctaccgggacacgtgcgccgaggcgcgccgcttcttcaagtcggcggaggcgtgggaccccaaccacgacgacgcccgccggatgctgctttccgtcaacacgtccaagaagccggcggatgtgaagggcgaccggagcaagtcggtgctgttcgactcctgcatcctggccaaggtgctctgggagctggactacgacaccatgtggagggtggtggccggagtgtggagggagatgctgacttacgcggccggcaagtgccaggggagcacacacgtgcgccagctcagccgtggtggtggccggagtgtggagggagatgctgacttacgcggccggcaagtgccaggggagcacacacgtgcgccagctcagccgtggcggcgagctcatcaccatgcatggttcctcatggcgcacatggggataggcgacgtgtatcggatcggcaagtggccggtgactccaaggccaagctcatcatccatgatcaatagctcatcgacgtccaatcttcacaagaaataa
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| Protein seq | MGFNPPVPQNDSDWEIRVAVLLSLLLQVILIFVGPMRKRFSQHVPHIAVWSCYLLADWVADLALGLLLNNLGNIGSSSSHLSAGAGGGPPIFAFWTPFLLLHLGGPDTITAYSVDDNELWLRHLIGLLFELFSALVVFSCSIRSNPMYGERTYSLYSGSVSGFRDKILGEPNPGPNYAKLMTEFDSKKKAGLLVEITIADGEASKAKEALEEGEEVRLVKESNKSLEAMAYDFFTMFRLLFVNLILSYKERRISQAYFLDRHDMTAGKAFEVVEVELNFIYDMVYTKALVSHSFTGCVLRCVGTACLVIAILLFALLDKTAILPVDRAITYALLLGGLALDVAAILMLLCSNRMIVFLEAKHMAWLSRVARAVRPRTKRWSERTSQLNLICYCLRKPKEQEGRRHCCRRKTIPPSVMRFLIWVADKVIVRETLLDYFFFIQRKPGSTDYGLMKKLCGYRGEGTLVDDEELVTVIKMELTKATRKVELNKKDNSSSTNKEEEMDESEYLVEKMVKEKLDGVLRNSIEREFDESLLLWHIATDLCCHRERKGPTQMHDTNGLMSISETLSEYMLYLLVRQPEMLSATAGIGLLRYRDTCAEARRFFKSAEAWDPNHDDARRMLLSVNTSKKPADVKGDRSKSVLFDSCILAKVLWELDYDTMWRVVAGVWREMLTYAAGKCQGSTHVRQLSRGGGRSVEGDADLRGRQVPGEHTRAPAQPWRRAHHHAWFLMAHMGIGDVYRIGKWPVTPRPSSSSMINSSSTSNLHKK |
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| Function | - | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLiXu_07g0000630 | OsLiXu_07g0000630.01 | Chr07 | 441436 | 443914 | - | NAM | ||
| CDS seq | atgggtttcaatccgccggtgccgcagaatgacagcgactgggagatccgggtggctgtgctgctcagcctcctccttcaggtcatcctcatcttcgtggggcccatgcgcaagcgcttctcccaacatgtcccgcacatcgccgtctggtcgtgctacctcctcgccgactgggtcgccgacctcgccctcggcctcctcctcaacaacctcggcaacatcggcagcagcagcagccacctctctgccggtgccggcggcggcccgcccatcttcgccttctggacgccgttcctcctgctccacctgggcggccccgacaccatcaccgcctactccgtcgacgacaacgagctctggctccgccacctcattggcttgctcttcgagctcttctccgccttggtcgtcttctcctgctccatcaggagcaaccccatgtacggcgagcgcacctactctctctactccggcagcgtctccggcttccgcgacaagatcctcggcgaacccaaccctgggcccaactacgccaagctcatgacggagttcgactccaagaagaaagccggactgctggtggagatcaccatcgcggacggcgaggccagcaaggcgaaggaggcgctggaggagggcgaggaggttcggctggtgaaggagagcaacaagagcctggaggcgatggcgtacgacttcttcaccatgttccggctgctcttcgtcaacctcatcctcagctacaaggagaggaggatcagccaggcctacttcctggaccgccacgacatgacggcgggcaaggcgttcgaggtggtggaggtggagctcaacttcatctacgacatggtgtacaccaaggcgctcgtgtcccacagcttcacaggctgcgtcctccgctgcgtcggcaccgcctgcctcgtcatcgccatcctcctcttcgcgctcctcgacaagaccgccatcctccccgtggaccgtgccatcacctacgcgctgctgctcggcgggctggcgctcgacgtggccgccatcctcatgctcctctgctccaaccggatgatcgtcttcctcgaagccaagcacatggcgtggctttcccgggtggccagggccgtgcggccgcggacaaagcggtggtcggagcggacctcgcagctgaacctcatctgctactgcctacgcaagcccaaggagcaggagggtcgccgccactgctgcaggaggaagacgatcccgccgagtgtgatgcggttcctcatctgggtcgccgacaaggtgatcgtcagggagaccttgttggactacttcttcttcatccagcgcaagccgggctccacggactacggcttgatgaagaagctgtgcggctaccgcggcgaggggaccctcgtggatgacgaggagcttgtcacagtcatcaagatggagctgaccaaggcaacacgaaaggtggagctcaacaagaaggataatagctcatcaaccaacaaggaggaggagatggacgagtccgagtacttggtcgagaagatggtgaaggagaagctggatggcgtcctgcggaacagcatcgagagggagttcgacgagtcgctgctgctatggcacatcgccactgacctatgctgtcaccgagagcggaaagggcctactcagatgcacgacaccaacggcttgatgtccatcagcgagaccctgtcggagtacatgctctacctcctcgtcaggcaaccggagatgctgtcggccaccgccggcatcggcctactccgctaccgggacacgtgcgccgaggcgcgccgcttcttcaagtcggcggaggcgtgggaccccaaccacgacgacgcccgccggatgctgctttccgtcaacacgtccaagaagccggcggatgtgaagggcgaccggagcaagtcggtgctgttcgactcctgcatcctggccaaggtgctctgggagctggactacgacaccatgtggagggtggtggccggagtgtggagggagatgctgacttacgcggccggcaagtgccaggggagcacacacgtgcgccagctcagccgtggtggtggccggagtgtggagggagatgctgacttacgcggccggcaagtgccaggggagcacacacgtgcgccagctcagccgtggcggcgagctcatcaccatgcatggttcctcatggcgcacatggggataggcgacgtgtatcggatcggcaagtggccggtgactccaaggccaagctcatcatccatgatcaatagctcatcgacgtccaatcttcacaagaaataa
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| Protein seq | MGFNPPVPQNDSDWEIRVAVLLSLLLQVILIFVGPMRKRFSQHVPHIAVWSCYLLADWVADLALGLLLNNLGNIGSSSSHLSAGAGGGPPIFAFWTPFLLLHLGGPDTITAYSVDDNELWLRHLIGLLFELFSALVVFSCSIRSNPMYGERTYSLYSGSVSGFRDKILGEPNPGPNYAKLMTEFDSKKKAGLLVEITIADGEASKAKEALEEGEEVRLVKESNKSLEAMAYDFFTMFRLLFVNLILSYKERRISQAYFLDRHDMTAGKAFEVVEVELNFIYDMVYTKALVSHSFTGCVLRCVGTACLVIAILLFALLDKTAILPVDRAITYALLLGGLALDVAAILMLLCSNRMIVFLEAKHMAWLSRVARAVRPRTKRWSERTSQLNLICYCLRKPKEQEGRRHCCRRKTIPPSVMRFLIWVADKVIVRETLLDYFFFIQRKPGSTDYGLMKKLCGYRGEGTLVDDEELVTVIKMELTKATRKVELNKKDNSSSTNKEEEMDESEYLVEKMVKEKLDGVLRNSIEREFDESLLLWHIATDLCCHRERKGPTQMHDTNGLMSISETLSEYMLYLLVRQPEMLSATAGIGLLRYRDTCAEARRFFKSAEAWDPNHDDARRMLLSVNTSKKPADVKGDRSKSVLFDSCILAKVLWELDYDTMWRVVAGVWREMLTYAAGKCQGSTHVRQLSRGGGRSVEGDADLRGRQVPGEHTRAPAQPWRRAHHHAWFLMAHMGIGDVYRIGKWPVTPRPSSSSMINSSSTSNLHKK
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.0 | 0.000000 | 0.0 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_07g0105800 | RBH | 0.0 | 0.0 | 0.0 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os07g01520 | RBH | 0.0 | 0.0 | 0.0 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os07g0105800 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_07g0000380 | SBH | 0.0 | 0.0 | 0.0 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_07g0000620 | RBH | 0.0 | 0.429992 | 0.0 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_07g0000360 | SBH | 0.0 | 0.0 | 0.0 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_07g0000370 | SBH | 0.0 | 0.0 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_07g0000380 | SBH | 0.0 | 0.0 | 0.0 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_07G0005100 | RBH | 0.8110675 | 0.0284975 | 0.111165 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_07g0000380 | SBH | 0.0 | 0.0 | 0.0 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_07G0006100 | RBH | 0.427272 | 0.008307 | 0.2477125 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_07g0000580 | RBH | 0.0 | 0.0 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_07g0000600 | RBH | 0.0 | 1.202163 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_07g0000600 | RBH | 0.000000 | 12.585883 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_Ung0074550 | RBH | 0.0 | 0.0 | 0.0 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_07g0000600 | RBH | 0.0 | 0.0 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_07G000390 | SBH | 0.0 | 0.0 | 0.127382 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_07g0000390 | SBH | 0.0 | 0.0 | 0.0 |
