Basic Info

Gene ID OGI # | Score   Accession | Assembly | Annotation Location Links
Os07g0107900 OGI:07001090 | 16/16 Nipponbare | IRGSP 1.0 | RAP-db Chr07:428798-431607
Gene Symbol -
DNA seq

CATATTGCGCGTTAGATTCTGGCGTGATCTGAGCCATGAGTCCATCCATGGCCCCAACCTAGCTAGTGCGTGTTGTGTTCTTTAGTTGGTCGCCACACGGGCAATGCCAAAGTAAAGCCAGGCATGATGCCGGAGGAGGAGGAGGAGAATATGAGATGAGATGAACACTTAAAAGGAGAAAGAAAGAAGGAGGAGAATATACAAAGGGAAGTTGTTCCCATCTGATCTGATCCATCATCCATCTCAATGTGCAGCAGCAGCAGAAGCAGTGTATTATTCTGTTGTTAGGAGAGAAGTTCAGAGAAGTAGTAGTAGTCCCTATAAGAAAGGGGAAAGAAAAAAAAAAGAAGAAACCCTATCCAAACAAAAACAAAGGGAAGAGAGAAGAAAGTTGGAGACTTGGAGGAGGAACCCTCCACCACCAGCAAAGCCAATAGAGGGATCATCCGCCGTAATCTATCTAGCCATCAATCCATCTCCCTCTCCTCCTCTGCTCTCCATGAAGAGCAAATCCTCCAGGAAGGCCGCCGACGAGGTAACCTCACTATCCCGCTTTGGTCGATTTCGGTAGGGTTTGTGCGCTCCTCAACAATCTCGCCCCGCGATTAGGGTATTTGCGATAAATTACTGCGGAAAATCTGTTTCTTGGGGGTTGGACTACCCCGGACGCGGTGCCAAATGAAGCGCTGGGATTATCACGATGCGCTGCCGATTCTTCAGCCGAGTTCTTCGGGGATCGTATTAACTGATTTCTTTTGTTTGAAATTTCTTGTTAGGATGAGGCCAAGTCCAAGAAGCTCCGATCCTCCCGCGGCAAGCAGCGGCCTAAGCAGCGCCGGCGAGGCCGCTGCAGCAGCACCTCCTCCCGCTCTGAATCCCCACCCCGCAAGCGCTCCAAGAAGCTCAAGGTCTCTGACAAGAAGAGCACCAAGAACAAGGGCCGCAGACGCCACCACAGTCTTAGCCCCAGCCCCAGCCCTTCATCGTCGTCCGTGAGTTACTCAACGCGCAGCAGCAGCGGTGGCGGCGGCGGCGCTTCTGAGAGGTCGGTGAGCCCACCGCGTAGGAGCCGCTCTAGAGATGTTAGGAAGAAGAAGAAGGAGAGGGGGAGGGACAGCAAGAGGGTGAGGAGGTCAAGAAGATCTACAAGCTATTCAACCAGTGGAGAGAGTAATTCCAGTAGTCGCAGCAGGAGTAGGAGCAATAATAGTAAGAGCAGGAATCGCAAGTCCGGTGGCAATAAGGATCATGCAAGCAGGAATAAGATTGTGCAGGATTATGACAATGGCCATGCTCATCGGGCTGAGAATGTGAAATCTGTTGAGATTGCGGATAGGGATGAGAAAGCCATGGCTGATACCAGCAAGGGGAGCTCTATTGAGATATCTCACTCAATTATTGATCATGAGAAGAATGAGTCCGTTGAGAAGATGGAGAGCGCTCCTACCAAGGATGCTGATGAAACACAAGACATCTTACCTGCTGGTAGTGGAAGCCCTGATGCTCAGGATCTGGAGCTGATTCTCAGGCAGAAAGCTCTTGAGAACTTCAGAAAATTTAGAGGAGCAGCGCTCATGGCAGGCAAGCCGCAAACCAATGGTACAGGGAAGGAAGTGGTAACGGATAGCCCCAAGAGCAGTGACACGAAAATTGCTGAAGCGAGTTCTGTTGACAAACCTTTTCAGAGGCAAAGAAGTGGTCTTTCAGTGAACTGCTCTGTTGGATCCCCTAGATTGGAGGATTTCGGGAACCATATAACTCCTCGAAAGCAGGAAAGCTCCGCTGGCAAGAGCGTTGGCGTTGAATCACCTGGAACATTTGAGGCCGGCAGCACCAGCGGGCGAACTGAGCAGAAAGGAAGCAGTCTAGAACCTACTCGATCAAATTCACAGATTAGGCTACAGGATGGTAGGAGTAGTTCCAGCATAATGCATAGGTTGGGAAGCCCTCCAAGGAGCTCTGCCAGCGTGATTCGAAGGTTAGGAAGCAGCGCAGGGGTGAATTATGTGAATGGAAATCCCAGAGTTAGATCAGTTGTGAGCATACCCACTAAGGAAGGGCTTGATAGTGGTACATCTATCACTACCCCTAGTGCTTGTGATAATTCTCCCCCTGTTGAAAACATTAGTGAAGTCAGGCATCCTCCTATTGATACTAACAAAATTGAAGGAACTAAAGGGGATGAAAGAAATTCAGGTGAAGCTTCAGCTCCTAATGTTTCTACTTTGTCAACTGGTGAGGTCAAGGATCAGCCTGGGACTGAGGTCAAAGATGGTTCTCAGTTTGAGAAAAAGACATTCTCTAGAATGCATGAGGGAGAAACTGTGCAGGTGAGCAAGAAACCTCTCTTTTTTCTTCAAATGTATGCCTTATCTCTACATTGTACTGATTAGCTTTCTTGCATTTGTTAGGTCAGTTACAAAGTCTACATACCAAAGAAAAGTCCAGCACTTGCAAGGAGGAAGCTACAGCGCTGAAGTTGCCAAGATTGTCACCAAATTCTCATTATTTGTCTTGTCTACACCTTAGTTATGTAGCTGGATATACTTTTACTCTCTGCTGCCATGTATTGACAATACATGCCTTCCGGAAATCATTCCCACATCAAAATTGCTCATATTTCAGTTTTGATGCTCGATAGCTCAGATAGAAGCCTGGATAGTCAAAACATGTCATAGTTGTTTCTTTTTTACTGCAAAATGAACATTTTGACTGTAACTCGCTCCGAATTCTGACACAGTGTATGGGCAGCTACTGTTGTCATGGCCTGCAGTGAACTATTGCAATGAATTATTGGACAAATATCTGGC

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CDS seq

ATGAAGAGCAAATCCTCCAGGAAGGCCGCCGACGAGGATGAGGCCAAGTCCAAGAAGCTCCGATCCTCCCGCGGCAAGCAGCGGCCTAAGCAGCGCCGGCGAGGCCGCTGCAGCAGCACCTCCTCCCGCTCTGAATCCCCACCCCGCAAGCGCTCCAAGAAGCTCAAGGTCTCTGACAAGAAGAGCACCAAGAACAAGGGCCGCAGACGCCACCACAGTCTTAGCCCCAGCCCCAGCCCTTCATCGTCGTCCGTGAGTTACTCAACGCGCAGCAGCAGCGGTGGCGGCGGCGGCGCTTCTGAGAGGTCGGTGAGCCCACCGCGTAGGAGCCGCTCTAGAGATGTTAGGAAGAAGAAGAAGGAGAGGGGGAGGGACAGCAAGAGGGTGAGGAGGTCAAGAAGATCTACAAGCTATTCAACCAGTGGAGAGAGTAATTCCAGTAGTCGCAGCAGGAGTAGGAGCAATAATAGTAAGAGCAGGAATCGCAAGTCCGGTGGCAATAAGGATCATGCAAGCAGGAATAAGATTGTGCAGGATTATGACAATGGCCATGCTCATCGGGCTGAGAATGTGAAATCTGTTGAGATTGCGGATAGGGATGAGAAAGCCATGGCTGATACCAGCAAGGGGAGCTCTATTGAGATATCTCACTCAATTATTGATCATGAGAAGAATGAGTCCGTTGAGAAGATGGAGAGCGCTCCTACCAAGGATGCTGATGAAACACAAGACATCTTACCTGCTGGTAGTGGAAGCCCTGATGCTCAGGATCTGGAGCTGATTCTCAGGCAGAAAGCTCTTGAGAACTTCAGAAAATTTAGAGGAGCAGCGCTCATGGCAGGCAAGCCGCAAACCAATGGTACAGGGAAGGAAGTGGTAACGGATAGCCCCAAGAGCAGTGACACGAAAATTGCTGAAGCGAGTTCTGTTGACAAACCTTTTCAGAGGCAAAGAAGTGGTCTTTCAGTGAACTGCTCTGTTGGATCCCCTAGATTGGAGGATTTCGGGAACCATATAACTCCTCGAAAGCAGGAAAGCTCCGCTGGCAAGAGCGTTGGCGTTGAATCACCTGGAACATTTGAGGCCGGCAGCACCAGCGGGCGAACTGAGCAGAAAGGAAGCAGTCTAGAACCTACTCGATCAAATTCACAGATTAGGCTACAGGATGGTAGGAGTAGTTCCAGCATAATGCATAGGTTGGGAAGCCCTCCAAGGAGCTCTGCCAGCGTGATTCGAAGGTTAGGAAGCAGCGCAGGGGTGAATTATGTGAATGGAAATCCCAGAGTTAGATCAGTTGTGAGCATACCCACTAAGGAAGGGCTTGATAGTGGTACATCTATCACTACCCCTAGTGCTTGTGATAATTCTCCCCCTGTTGAAAACATTAGTGAAGTCAGGCATCCTCCTATTGATACTAACAAAATTGAAGGAACTAAAGGGGATGAAAGAAATTCAGGTGAAGCTTCAGCTCCTAATGTTTCTACTTTGTCAACTGGTGAGGTCAAGGATCAGCCTGGGACTGAGGTCAAAGATGGTTCTCAGTTTGAGAAAAAGACATTCTCTAGAATGCATGAGGGAGAAACTGTGCAGGTCAGTTACAAAGTCTACATACCAAAGAAAAGTCCAGCACTTGCAAGGAGGAAGCTACAGCGCTGA

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Protein seq

MKSKSSRKAADEDEAKSKKLRSSRGKQRPKQRRRGRCSSTSSRSESPPRKRSKKLKVSDKKSTKNKGRRRHHSLSPSPSPSSSSVSYSTRSSSGGGGGASERSVSPPRRSRSRDVRKKKKERGRDSKRVRRSRRSTSYSTSGESNSSSRSRSRSNNSKSRNRKSGGNKDHASRNKIVQDYDNGHAHRAENVKSVEIADRDEKAMADTSKGSSIEISHSIIDHEKNESVEKMESAPTKDADETQDILPAGSGSPDAQDLELILRQKALENFRKFRGAALMAGKPQTNGTGKEVVTDSPKSSDTKIAEASSVDKPFQRQRSGLSVNCSVGSPRLEDFGNHITPRKQESSAGKSVGVESPGTFEAGSTSGRTEQKGSSLEPTRSNSQIRLQDGRSSSSIMHRLGSPPRSSASVIRRLGSSAGVNYVNGNPRVRSVVSIPTKEGLDSGTSITTPSACDNSPPVENISEVRHPPIDTNKIEGTKGDERNSGEASAPNVSTLSTGEVKDQPGTEVKDGSQFEKKTFSRMHEGETVQVSYKVYIPKKSPALARRKLQR

Function -

Transcripts

Gene Transcript Chromosome Start End Strand Source
Os07g0107900 Os07t0107900-01 Chr07 428798 431565 + irgsp1_rep
CDS seq

ATGAAGAGCAAATCCTCCAGGAAGGCCGCCGACGAGGATGAGGCCAAGTCCAAGAAGCTCCGATCCTCCCGCGGCAAGCAGCGGCCTAAGCAGCGCCGGCGAGGCCGCTGCAGCAGCACCTCCTCCCGCTCTGAATCCCCACCCCGCAAGCGCTCCAAGAAGCTCAAGGTCTCTGACAAGAAGAGCACCAAGAACAAGGGCCGCAGACGCCACCACAGTCTTAGCCCCAGCCCCAGCCCTTCATCGTCGTCCGTGAGTTACTCAACGCGCAGCAGCAGCGGTGGCGGCGGCGGCGCTTCTGAGAGGTCGGTGAGCCCACCGCGTAGGAGCCGCTCTAGAGATGTTAGGAAGAAGAAGAAGGAGAGGGGGAGGGACAGCAAGAGGGTGAGGAGGTCAAGAAGATCTACAAGCTATTCAACCAGTGGAGAGAGTAATTCCAGTAGTCGCAGCAGGAGTAGGAGCAATAATAGTAAGAGCAGGAATCGCAAGTCCGGTGGCAATAAGGATCATGCAAGCAGGAATAAGATTGTGCAGGATTATGACAATGGCCATGCTCATCGGGCTGAGAATGTGAAATCTGTTGAGATTGCGGATAGGGATGAGAAAGCCATGGCTGATACCAGCAAGGGGAGCTCTATTGAGATATCTCACTCAATTATTGATCATGAGAAGAATGAGTCCGTTGAGAAGATGGAGAGCGCTCCTACCAAGGATGCTGATGAAACACAAGACATCTTACCTGCTGGTAGTGGAAGCCCTGATGCTCAGGATCTGGAGCTGATTCTCAGGCAGAAAGCTCTTGAGAACTTCAGAAAATTTAGAGGAGCAGCGCTCATGGCAGGCAAGCCGCAAACCAATGGTACAGGGAAGGAAGTGGTAACGGATAGCCCCAAGAGCAGTGACACGAAAATTGCTGAAGCGAGTTCTGTTGACAAACCTTTTCAGAGGCAAAGAAGTGGTCTTTCAGTGAACTGCTCTGTTGGATCCCCTAGATTGGAGGATTTCGGGAACCATATAACTCCTCGAAAGCAGGAAAGCTCCGCTGGCAAGAGCGTTGGCGTTGAATCACCTGGAACATTTGAGGCCGGCAGCACCAGCGGGCGAACTGAGCAGAAAGGAAGCAGTCTAGAACCTACTCGATCAAATTCACAGATTAGGCTACAGGATGGTAGGAGTAGTTCCAGCATAATGCATAGGTTGGGAAGCCCTCCAAGGAGCTCTGCCAGCGTGATTCGAAGGTTAGGAAGCAGCGCAGGGGTGAATTATGTGAATGGAAATCCCAGAGTTAGATCAGTTGTGAGCATACCCACTAAGGAAGGGCTTGATAGTGGTACATCTATCACTACCCCTAGTGCTTGTGATAATTCTCCCCCTGTTGAAAACATTAGTGAAGTCAGGCATCCTCCTATTGATACTAACAAAATTGAAGGAACTAAAGGGGATGAAAGAAATTCAGGTGAAGCTTCAGCTCCTAATGTTTCTACTTTGTCAACTGGTGAGGTCAAGGATCAGCCTGGGACTGAGGTCAAAGATGGTTCTCAGTTTGAGAAAAAGACATTCTCTAGAATGCATGAGGGAGAAACTGTGCAGGTCAGTTACAAAGTCTACATACCAAAGAAAAGTCCAGCACTTGCAAGGAGGAAGCTACAGCGCTGA

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Protein seq

MKSKSSRKAADEDEAKSKKLRSSRGKQRPKQRRRGRCSSTSSRSESPPRKRSKKLKVSDKKSTKNKGRRRHHSLSPSPSPSSSSVSYSTRSSSGGGGGASERSVSPPRRSRSRDVRKKKKERGRDSKRVRRSRRSTSYSTSGESNSSSRSRSRSNNSKSRNRKSGGNKDHASRNKIVQDYDNGHAHRAENVKSVEIADRDEKAMADTSKGSSIEISHSIIDHEKNESVEKMESAPTKDADETQDILPAGSGSPDAQDLELILRQKALENFRKFRGAALMAGKPQTNGTGKEVVTDSPKSSDTKIAEASSVDKPFQRQRSGLSVNCSVGSPRLEDFGNHITPRKQESSAGKSVGVESPGTFEAGSTSGRTEQKGSSLEPTRSNSQIRLQDGRSSSSIMHRLGSPPRSSASVIRRLGSSAGVNYVNGNPRVRSVVSIPTKEGLDSGTSITTPSACDNSPPVENISEVRHPPIDTNKIEGTKGDERNSGEASAPNVSTLSTGEVKDQPGTEVKDGSQFEKKTFSRMHEGETVQVSYKVYIPKKSPALARRKLQR

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Gene Transcript Chromosome Start End Strand Source
Os07g0107900 Os07t0107900-02 Chr07 429005 431607 + irgsp1_rep
CDS seq

ATGAAGAGCAAATCCTCCAGGAAGGCCGCCGACGAGGATGAGGCCAAGTCCAAGAAGCTCCGATCCTCCCGCGGCAAGCAGCGGCCTAAGCAGCGCCGGCGAGGCCGCTGCAGCAGCACCTCCTCCCGCTCTGAATCCCCACCCCGCAAGCGCTCCAAGAAGCTCAAGGTCTCTGACAAGAAGAGCACCAAGAACAAGGGCCGCAGACGCCACCACAGTCTTAGCCCCAGCCCCAGCCCTTCATCGTCGTCCGTGAGTTACTCAACGCGCAGCAGCAGCGGTGGCGGCGGCGGCGCTTCTGAGAGGTCGGTGAGCCCACCGCGTAGGAGCCGCTCTAGAGATGTTAGGAAGAAGAAGAAGGAGAGGGGGAGGGACAGCAAGAGGGTGAGGAGGTCAAGAAGATCTACAAGCTATTCAACCAGTGGAGAGAGTAATTCCAGTAGTCGCAGCAGGAGTAGGAGCAATAATAGTAAGAGCAGGAATCGCAAGTCCGGTGGCAATAAGGATCATGCAAGCAGGAATAAGATTGTGCAGGATTATGACAATGGCCATGCTCATCGGGCTGAGAATGTGAAATCTGTTGAGATTGCGGATAGGGATGAGAAAGCCATGGCTGATACCAGCAAGGGGAGCTCTATTGAGATATCTCACTCAATTATTGATCATGAGAAGAATGAGTCCGTTGAGAAGATGGAGAGCGCTCCTACCAAGGATGCTGATGAAACACAAGACATCTTACCTGCTGGTAGTGGAAGCCCTGATGCTCAGGATCTGGAGCTGATTCTCAGGCAGAAAGCTCTTGAGAACTTCAGAAAATTTAGAGGAGCAGCGCTCATGGCAGGCAAGCCGCAAACCAATGGTACAGGGAAGGAAGTGGTAACGGATAGCCCCAAGAGCAGTGACACGAAAATTGCTGAAGCGAGTTCTGTTGACAAACCTTTTCAGAGGCAAAGAAGTGGTCTTTCAGTGAACTGCTCTGTTGGATCCCCTAGATTGGAGGATTTCGGGAACCATATAACTCCTCGAAAGCAGGAAAGCTCCGCTGGCAAGAGCGTTGGCGTTGAATCACCTGGAACATTTGAGGCCGGCAGCACCAGCGGGCGAACTGAGCAGAAAGGAAGCAGTCTAGAACCTACTCGATCAAATTCACAGATTAGGCTACAGGATGGTAGGAGTAGTTCCAGCATAATGCATAGGTTGGGAAGCCCTCCAAGGAGCTCTGCCAGCGTGATTCGAAGGTTAGGAAGCAGCGCAGGGGTGAATTATGTGAATGGAAATCCCAGAGTTAGATCAGTTGTGAGCATACCCACTAAGGAAGGGCTTGATAGTGGTACATCTATCACTACCCCTAGTGCTTGTGATAATTCTCCCCCTGTTGAAAACATTAGTGAAGTCAGGCATCCTCCTATTGATACTAACAAAATTGAAGGAACTAAAGGGGATGAAAGAAATTCAGGTGAAGCTTCAGCTCCTAATGTTTCTACTTTGTCAACTGGTGAGGTCAAGGATCAGCCTGGGACTGAGGTCAAAGATGGTTCTCAGTTTGAGAAAAAGACATTCTCTAGAATGCATGAGGGAGAAACTGTGCAGGTCAGTTACAAAGTCTACATACCAAAGAAAAGTCCAGCACTTGCAAGGAGGAAGCTACAGCGCTGA

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Protein seq

MKSKSSRKAADEDEAKSKKLRSSRGKQRPKQRRRGRCSSTSSRSESPPRKRSKKLKVSDKKSTKNKGRRRHHSLSPSPSPSSSSVSYSTRSSSGGGGGASERSVSPPRRSRSRDVRKKKKERGRDSKRVRRSRRSTSYSTSGESNSSSRSRSRSNNSKSRNRKSGGNKDHASRNKIVQDYDNGHAHRAENVKSVEIADRDEKAMADTSKGSSIEISHSIIDHEKNESVEKMESAPTKDADETQDILPAGSGSPDAQDLELILRQKALENFRKFRGAALMAGKPQTNGTGKEVVTDSPKSSDTKIAEASSVDKPFQRQRSGLSVNCSVGSPRLEDFGNHITPRKQESSAGKSVGVESPGTFEAGSTSGRTEQKGSSLEPTRSNSQIRLQDGRSSSSIMHRLGSPPRSSASVIRRLGSSAGVNYVNGNPRVRSVVSIPTKEGLDSGTSITTPSACDNSPPVENISEVRHPPIDTNKIEGTKGDERNSGEASAPNVSTLSTGEVKDQPGTEVKDGSQFEKKTFSRMHEGETVQVSYKVYIPKKSPALARRKLQR

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Event Type Chromosome Start End Strand Alternative mRNAs Total mRNAs Source

Expression

Leaf Root Panicle
FPKM None None None

Homologues

Genome & Annotation Homologs Type Expression(FPKM)
Leaf Root Panicle
Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) OsNip_07g0107900 RBH 0.847754 1.059990 3.977400
Nipponbare | IRGSP 1.0 | MSU LOC_Os07g01720 RBH 0.533592 0.619355 1.057445
Nipponbare | IRGSP 1.0 | RAP-db NA NA NA NA NA
Azucena | AzucenaRS1 | Gramene(+IsoSeq) OsAzu_07g0000490 SBH 0.265764 11.061124 3.065799
KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) OsKeNa_07g0000540 SBH 0.085125 0.395479 0.302581
CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) OsCMeo_07g0000470 SBH 0.805605 1.512653 5.278978
ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) OsARC_07g0000470 SBH 0.165445 0.085371 None
PR 106 | Os127742RS1 | Gramene(+IsoSeq) OsPr106_07g0000490 SBH 2.017027 6.287436 7.842426
Minghui 63 | MH63RS3 | HZAU OsMH63_07G0007000 RBH 7.5497315 10.7794895 17.17813
IR 64 | OsIR64RS1 | Gramene(+IsoSeq) OsIR64_07g0000480 SBH 0.186278 0.275313 1.042029
Zhenshan 97 | ZS97RS3 | HZAU OsZS97_07G0005200 SBH 3.6301755 5.0874595 9.688477
LIMA | Os127564RS1 | Gramene(+IsoSeq) OsLima_07g0000500 SBH 0.136143 0.193959 None
KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) OsKYG_07g0000510 SBH 0.224890 2.443970 None
GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) OsGoSa_07g0000520 SBH 2.849826 6.217840 None
LIU XU | Os125827RS1 | Gramene(+IsoSeq) OsLiXu_07g0000550 SBH 0.000000 0.000000 0.000000
LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) OsLaMu_07g0000510 SBH 0.209329 2.592500 None
N22 | OsN22RS2 | Gramene(+IsoSeq) OsN22_07G000520 SBH 0.204629 1.114532 1.296076
NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) OsNaBo_07g0000520 SBH 0.997154 5.910871 5.730480
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National Key Laboratory of Crop Genetic Improvement

Huazhong Agricultural University

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