Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| Os06g0641600 | OGI:06073650 | 16/16 | Nipponbare | IRGSP 1.0 | RAP-db | Chr06:26097154-26098278 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | TTATATTGTAGGCAAGGGTACGTGGACTACAGGAATAAGGACAAGGTCATGGAGCCGCCGCGTGGTGAATCGCATCTCCTCTGTCATGTCTAGGTTCTCAGCGTGTATCCCGCTCGGCAGTTCCCAGTTGAAATGGTACAGGAGGCTCGCTAATGTGAGCTCCACATTGGCTAGACCAAACGCCATGCCAGGGCACATCCTCCGACCTGCTCCAAATGGTGTGTACTCAAAATGTGTGCCTTTAAAGTCAACATCACTATGCTCAAACCTCTCTGGAATAAACTCTTCAGCTTCGTCCCAGTACTTGGGATCCCTACCAATAGCCGATACGTTAACAAACACCGTTGCTCCCTTGGGTATATCGTATCCTAGGACTTGGCACGTGCGTCGGCATTCCCGTGGTAGCAGCAATGATCCCGGTGGGTGTAGCCGGAGTGCCTCCTTGATGACCATATGCATGTAATTCAGTCTACATAGGGTATCTTCTGTCACTTTACGATGCCCGATGAGCTCTCGTCGTACTTCATCTTGTGCCTTCTGCATCACTTTCGGATTCCTCACGAGCTCCGCCATGATCCAATGCAGCGTCGTTGCTGCGGTCTCGCTGCCCCCAACCAACATGTCCTGTACACACATAACACGAAGCCAAATTCATTAGCGTTACTACCTCCGTTTCAAACCATAGGCCTATTCAGATTTATAACATTAGGATGTATCATATTCGGTTCTAGATTGCTATATATTGAGGCAAGTAGTATTACATTTCCTAGAAAGTGACGTGGTATTTCGTAGTTAAAAGGTCCTTACTCCAATTGTTGCCTTGATGCTTTCACTGGACAGGGGAAACTGCAGGTCGCCTTCCCTCTGGATCCTCAAGAGCACGTCGAGCAAGTCGTTGTCGTCGTCGGCGGCGGCTGATCTGTTCTCTTGGTGCTCCTGGATGATGGCGTCCAGGAACGCGACCATGTCCCGGTGATGCTGCTTCATCCGACGCGGCATTCGACTGAGGAGCATGGCGAGGCGCGACGACGGGTAGAGATCCGGCAGTGCAGGCTTGGCGAACAGCTTGAGGCCGCGCTCCAGCATCGCCAAGAACGCGTCGCGGTCCCTGAACCGATCGCCCAT
More
|
||||||||||
| CDS seq | ATGGGCGATCGGTTCAGGGACCGCGACGCGTTCTTGGCGATGCTGGAGCGCGGCCTCAAGCTGTTCGCCAAGCCTGCACTGCCGGATCTCTACCCGTCGTCGCGCCTCGCCATGCTCCTCAGTCGAATGCCGCGTCGGATGAAGCAGCATCACCGGGACATGGTCGCGTTCCTGGACGCCATCATCCAGGAGCACCAAGAGAACAGATCAGCCGCCGCCGACGACGACAACGACTTGCTCGACGTGCTCTTGAGGATCCAGAGGGAAGGCGACCTGCAGTTTCCCCTGTCCAGTGAAAGCATCAAGGCAACAATTGGAGACATGTTGGTTGGGGGCAGCGAGACCGCAGCAACGACGCTGCATTGGATCATGGCGGAGCTCGTGAGGAATCCGAAAGTGATGCAGAAGGCACAAGATGAAGTACGACGAGAGCTCATCGGGCATCGTAAAGTGACAGAAGATACCCTATGTAGACTGAATTACATGCATATGGTCATCAAGGAGGCACTCCGGCTACACCCACCGGGATCATTGCTGCTACCACGGGAATGCCGACGCACGTGCCAAGTCCTAGGATACGATATACCCAAGGGAGCAACGGTGTTTGTTAACGTATCGGCTATTGGTAGGGATCCCAAGTACTGGGACGAAGCTGAAGAGTTTATTCCAGAGAGGTTTGAGCATAGTGATGTTGACTTTAAAGGCACACATTTTGAGTACACACCATTTGGAGCAGGTCGGAGGATGTGCCCTGGCATGGCGTTTGGTCTAGCCAATGTGGAGCTCACATTAGCGAGCCTCCTGTACCATTTCAACTGGGAACTGCCGAGCGGGATACACGCTGAGAACCTAGACATGACAGAGGAGATGCGATTCACCACGCGGCGGCTCCATGACCTTGTCCTTATTCCTGTAGTCCACGTACCCTTGCCTACAATATAA
More
|
||||||||||
| Protein seq | MGDRFRDRDAFLAMLERGLKLFAKPALPDLYPSSRLAMLLSRMPRRMKQHHRDMVAFLDAIIQEHQENRSAAADDDNDLLDVLLRIQREGDLQFPLSSESIKATIGDMLVGGSETAATTLHWIMAELVRNPKVMQKAQDEVRRELIGHRKVTEDTLCRLNYMHMVIKEALRLHPPGSLLLPRECRRTCQVLGYDIPKGATVFVNVSAIGRDPKYWDEAEEFIPERFEHSDVDFKGTHFEYTPFGAGRRMCPGMAFGLANVELTLASLLYHFNWELPSGIHAENLDMTEEMRFTTRRLHDLVLIPVVHVPLPTI |
||||||||||
| Function | Ent-cassadiene hydroxylase [UniProtKB/Swiss-Prot:Q6YV88] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| Os06g0641600 | Os06t0641600-00 | Chr06 | 26097154 | 26098278 | - | irgsp1_rep | ||
| CDS seq | ATGGGCGATCGGTTCAGGGACCGCGACGCGTTCTTGGCGATGCTGGAGCGCGGCCTCAAGCTGTTCGCCAAGCCTGCACTGCCGGATCTCTACCCGTCGTCGCGCCTCGCCATGCTCCTCAGTCGAATGCCGCGTCGGATGAAGCAGCATCACCGGGACATGGTCGCGTTCCTGGACGCCATCATCCAGGAGCACCAAGAGAACAGATCAGCCGCCGCCGACGACGACAACGACTTGCTCGACGTGCTCTTGAGGATCCAGAGGGAAGGCGACCTGCAGTTTCCCCTGTCCAGTGAAAGCATCAAGGCAACAATTGGAGACATGTTGGTTGGGGGCAGCGAGACCGCAGCAACGACGCTGCATTGGATCATGGCGGAGCTCGTGAGGAATCCGAAAGTGATGCAGAAGGCACAAGATGAAGTACGACGAGAGCTCATCGGGCATCGTAAAGTGACAGAAGATACCCTATGTAGACTGAATTACATGCATATGGTCATCAAGGAGGCACTCCGGCTACACCCACCGGGATCATTGCTGCTACCACGGGAATGCCGACGCACGTGCCAAGTCCTAGGATACGATATACCCAAGGGAGCAACGGTGTTTGTTAACGTATCGGCTATTGGTAGGGATCCCAAGTACTGGGACGAAGCTGAAGAGTTTATTCCAGAGAGGTTTGAGCATAGTGATGTTGACTTTAAAGGCACACATTTTGAGTACACACCATTTGGAGCAGGTCGGAGGATGTGCCCTGGCATGGCGTTTGGTCTAGCCAATGTGGAGCTCACATTAGCGAGCCTCCTGTACCATTTCAACTGGGAACTGCCGAGCGGGATACACGCTGAGAACCTAGACATGACAGAGGAGATGCGATTCACCACGCGGCGGCTCCATGACCTTGTCCTTATTCCTGTAGTCCACGTACCCTTGCCTACAATATAA
More
|
|||||||
| Protein seq | MGDRFRDRDAFLAMLERGLKLFAKPALPDLYPSSRLAMLLSRMPRRMKQHHRDMVAFLDAIIQEHQENRSAAADDDNDLLDVLLRIQREGDLQFPLSSESIKATIGDMLVGGSETAATTLHWIMAELVRNPKVMQKAQDEVRRELIGHRKVTEDTLCRLNYMHMVIKEALRLHPPGSLLLPRECRRTCQVLGYDIPKGATVFVNVSAIGRDPKYWDEAEEFIPERFEHSDVDFKGTHFEYTPFGAGRRMCPGMAFGLANVELTLASLLYHFNWELPSGIHAENLDMTEEMRFTTRRLHDLVLIPVVHVPLPTI
More
|
|||||||
| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | None | None | None |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_06g0641600 | RBH | 0.0 | 0.0 | 0.0 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os06g43420 | RBH | 0.0 | 0.0 | 0.0 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os06g0641800 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_06g0023910 | RBH | 0.433880 | 0.0 | 0.223596 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_06g0023710 | SBH | 0.150415 | 0.0 | 2.182080 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_06g0023890 | SBH | 1.535936 | 0.0 | 1.516414 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_06g0023460 | RBH | 0.153229 | 0.105208 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_06g0023920 | RBH | 1.217959 | 2.052969 | 1.587025 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_06G0409700 | SBH | 0.0079535 | 0.027835 | 0 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_06g0023400 | SBH | 0.172572 | 0.0 | 0.292555 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_06G0391000 | SBH | 2.740199 | 1.682734 | 0.5640175 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_06g0023850 | SBH | 0.0 | 0.0 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_06g0023790 | RBH | 0.297153 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_06g0023470 | RBH | 0.403470 | 1.452883 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_06g0024120 | SBH | 0.0 | 0.141510 | 0.813795 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_06g0023710 | SBH | 0.076374 | 0.0 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_06G023530 | RBH | 0.344035 | 0.000000 | 0.634839 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_06g0023730 | SBH | 0.818922 | 0.000000 | 0.450842 |
