Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| Os06g0621600 | OGI:06070600 | 16/16 | Nipponbare | IRGSP 1.0 | RAP-db | Chr06:24954264-24959578 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | CAACTTAATGTGATATGCTCAAATCTCAAAATGTCATTTCAATCTCCGGTATTTATCTCAAAAGCCAGCATACATATTGTGTGATACATATCTGATTATTCCAAAGAAAAGGGAAAAAATAACTCCACAAGAAAGATACTCCTGGTGAGCAGATGGCAACATTGCATCTTGTAGAAAAAGTATAAAACGCAAGCAATGAATGGTGAATGTTCTGTAATGCATAAATAATAGGTTTAGATGTGAAAATGCACAAGCCTCATAATAAGTTGGCTTGATTAAAATAGAACCCACAGGTGGAATTTTTTTTTTTTTGGCCAGGTCAGCACAGCCACACAGGTAGATGTGATGAAGCTGTAGGTGATCACCGGCAGGCCTACAGCTTCGGAGGACAGCCCAGATAGTTTACTGAAGAAAACTGGAAGAACTTGCTGAAGAATCAGTTGGATGCAGTAGACTGGATTGAATTGACCGCTGGATTATATCATTCTCGCGAAGTATTTCCTCAGCTATATCTGCAATAGGTTGGCACTAACACAAATCAGTGGATTGTGGTAATATTTTTGCAACAAATAATTGCTAGACCTATCCTTTTCAAAATTCAAGCTGCTGTGAATTACCTTGACCATATCCTATCGATTCACCAGCAAACAAACATGACGGCAACATGGCATACTTCTCCCACTCAACACCATGTTGCCATTCAAACTGCTCCTCTAGCAATGGATGGCATCCATTCAAATACAAAAATTTAAGGGTCAGAGGAAGACCATCTTCCGGTAAAGAAACAATTTCAGGGCATTTGTGTATGATCATGACTCTGAGGGAGAAGAAGTCAAACATCTCAGGCAAAGCCACTAACTTCAGGCAATTTCTGATCTCCAGTTTGGAAAGGAAAGAAAGGTTTCTCAAGCTCCTCAGTGATACCAGTTTGTTGCAGTGCTCTATAAGAACCTCTGTCAAGGTTGTTAGGTGTCCATCCTCTTGTAGTTCATTCAATTCGGGGCAATCTTGTATGATCAAGTTCTTGAGGACAGGAAAATATCTGAAGTCCAACAACGATGTTATGTTGGGGCAACCAACAATTTTCATTTCTGTTAAACTCGCAAACGCACGGTGTAAATCAGCATACCAGCAGATAAATGGTCCTTGGTGGGATGGAAGATTGGGGCCTAGATCTCTAAGCCCATCATTCACCATGTCTGCTCCGTCAAAGCTAATTTCTGCAATTTCCACAGATTCCTGGTGACATACGTGAAAAATACCCGAAAGGCTAGTTAAGCTAACCTCCTTTTGAGTAATACATGTGTCCAGGCGATGATCAGTATGCTGTGTGTAAACGATGGTGGATGGGAGCACTTCCATTTTTACAGGTGGAGGAAAGACTGGTGGCAGTTCTTTCAGCTTTGGACACCTACTGATGAGTACATCGTGAAGAACAGGAAAAGCATAATCGATTGAAGACCAATCTGCCAATTCTGGCAATTCTGTCAATTCTAGTGTTTTCAGGGAGGGAAAGCCAGCATCTCCATAGAAAGATGTGCCGATGCACTCTAATGATTTCATTCCATCAATATGAAGTTCCCTGAGAGATGGTAACTGACCTAAAGGTGGAAGCAACTTCCAACATGTGCAATCATGAATGCTGATGTGTTGCAATCTAGATAGCCACTTGGACTCCAGCCAACATGGAGATGTACAGCCTGAGTATCCTTCAACATTCAATTCCTCAAGGCAAGGATGAGGTGTTAAAGCATTGAGCACATCATATTCTTTGTCAGATTGGCTATCTGCATTAGAAAAACTCCATTGTAGGTCCAACCTAGATATTTGACTCTTGTTGACTAACTGAGCATCAATTGCTTCATCCTTGTTTTTCACATTCTCGAGAGATGTAAATATAAGAAACCCTCGGAGTTCATTCATGTCATGCAGGAGAAATGCCCAGGGGTCTTCCGGCTAGCTCCACAAGGTGGTGGGCTAGACGACCTGGGTTCAAAGCCTCACCCCTCCTAATTATTTGATATTAGGTCCTTCCCTAATATTCTAGTTTTTTTTTTCATTCATGTCATGCAGCACCTCTAGCCCCTGCGCTTTCCTCTTCTCAACACAGAATTCCCCTGCAGCCCGGAGGTATGGCATATGCCCCACAGAAGCCAAATCAACAGTAAGATCCCTATGAACATCAATAGTCAAAATATTGCTCAGGTTATCCAGGTTTTTGGGGAAGATGACATGTTTTGCACATATAAAACATGAATGCCGGTGTAGAAACAACATTTGTAAATGGTAAAGACTGCAGAGTGAATCAGGTAGAGGACGGTTAGTATTTGGGAGAATTAAGCACCTAAGGTGTATCATGTGATTTAAGTCCGGCAAATATCTTAAGCAGCAACCAGTCAAATCCAATAATCTCAAGCTCTTGAACTCTTTGAAAAAATCTACTCCCACACAAACTCGTTAGCAATAACATCTTTCTTTATTCCAAATTATTAGGGTGCGCAGCCTTTGCAACTTACAGGCACGAAGAAGGTCAACTCTTTCAGCCAGTATAGACAGATGTTGAACTTCTGGAAAAATCTCTTGAGGTTCATTGGCTTCTACTCTGTAACACTTACCATTGGACACGTGGACAGCAAGATCATTCATGAGGTCATGCATAACATAATGCACTGTACCTCCATATCGAAGTGCCTGGAAAAATGATCTTGATAACAACTCATCAAAATAACTTTTCCCAGTGCTTGTCAAGCTTCCATAGGTGCGTCCACGATCCTGAATAAATTCATGAGCTATCCACATGTTAACCAACATGTCAGGCTCGAAATAATAACCTTTTGGGAACAAACCACAGAACGAAAAGCATTGCTGAAGGTGCTCTGGCAAGCATTCATAGCTTAGGCGTAAAATTGTCATAATATCTTTCTCATTCGATAGACCACTTTTTAGAACTCGATTCCATTCTTCATAGTTGAAGTTTGAACTAAGATGCCCACCAACAGCCTTTATAGCTAATGCCGATCCATTCAATTTTTGCACAATGTGTTCACCTATAGACTTCAATTCGAGATGTTCATTTGGATCTCTAGTGCTAAATGCACATCTTCTGAAAAGTTCCCAGCTATCTTTACTCTCTAGACCACTCAAACAGAATGGAGTGGCACATCCTAATGTATTTGCAACAATACCCATTCGAGTTGTAACTAAAATCTTGATTACTTTCGCCCCATGCCATAAAGGAGCAAACAATTCTCTCCATCTATCAGCATTTATGGGTACCCCAACCTTTTCATCATACCAAACATCATCCAATACAAGTAGAAACTTCTTCATGGTTATTTTGTTCTTGAGTTCTTCTTGCAGCATGCTAAAATTAAAATTCGTTAGGTCAATGCTTTTATCAATAGTTGTTAGGATTTCTTTGGTGATTCTGACCTTATCAAAGACATGTGATACACATACCCATGCCCTCATATCAAAATTATCCTCGATTCTTTTATCATTGTAAATAAGTTGAGCTAAAGTAGTTTTTCCAATTCCGCCATTGCCGACTATAGTAATTACCTCTAATGATGTTGACCTTGCTCCTTTGCTTCTAGATTCAGGTTTGTCAGATTGTTCCAGCAATTGGTGCACTAGTTCTTCCCGTTCCTTCTGACGACCAACTACAAACTCACCAATTGAAATCGAGCTGGAGATACGCCATTGAAGGGGCTCAGGTAACATGTGTGAACTAAAGTTTTCTACTCCCATCACCCTGACGAGCATATGGGCACATTCCTTTACTGTACTCAAGCTTTTGAGCATCTTTCCCAATTTGGACCGAAACTTGTCATGGCCAACCAAACGCTTGGCAATAGAGATAGAACTGGAGCCTAAGCTTCTTAGCTTTCTCTTTTGAGCATTCGCTTTCAGAAACATGTAATCAAATTCATCCATGATGTCCTCGGCATCGTAGACAGCATCTTTCAGCTGGCGGAGTAAAGCTTGCTGATTGCAATCAAGTGTTCTCCGCCTTTCTGCAGTGCCTACTACCAAGAGAATTTCAGTTAAAATAGTCTCCAGCTTTTTAAGGTCATCCACCAAATTGGACTGCCACTTGTACTGAGTTGATATATATGATTGGACCTTCTCAAACATAAGCTTGATGACAGGAGATACTACCCATCCAACTCCAGTGGCTAGTGGTAAAGTGGCCATGTTGCTCAATATACTGTCTCTTGGCTCTTCAGTTTCTCCTTACAGCTTTCAACTGATGTACCTAGCATTGATAAGATAATTAATTAAATATAAGAACATAAAGAAAACATGTCGAAGTGAGGCATACTGGTGTCCATTAGTCAGTACATTTAATAGAACAATTCAGAAATAAAATCCGCATTATTCAAATGCATGTAAGATTACTATCAGAGATGGAACTATATAAAATTTCCCATTATTCCTTGATTCCATTAATTAGTTAAACCAGTAGACCCCTAGACACCAAAAAAATTAGTACTAATGTTGCAGCTATCTCGGACTCTCTGTGTCTCAGCTGCAGTTGTCTTTTGTTAAGTAGACTTCAGTTCCTAAAATTTCCTAGGAGGGAAATTATGAAATATTTAATTTTGTTAAAATACTTTTAAGAATAATCTATATCATGTTCTAGCTTCTTCAAACTAAATATTTTAAAAGTTATAGATAGCCCTCAATTTTGTCCAAACGTCAAGAATTATGGAACTCCATATGCTAAATACTCCCTATGTCCCATATAAGCGATTTTGGAGGGATGTGACACATCCTAGTTCTAGTTCTAGAATCTGGATAGAGAGGCTGTCCGGATTCGTGGTAATACTATGTTCTAGATTTGTAATACTATGATGCGTCACATCCCTCCAAAAATCCATTATATTTTAGAATGGAGGGAGTACGTGGTTTTGCAATACAGCGGCATAAATCTATAGTTTTGACAAAAATATCTATGGTTTTGCAAAATTAACTCCATATGTATTTCAGCAAAAGGGAAACATAGATAACTCATATGCCTGGGAAGCAAAGAGGAGCTACATACGGATCAAGATCCACCAAGTAAATTCAATATAATCGTTTTACTATGGTGAGAAATCCTTAAAAATTTGACAGCCTACAAATGCTGAACTCATGCTATCAAGTGAAAGAAACCAAGAATAATACCTTATCAATATATAAAATCCCTTTTTCCTCTCAGAACAAAAACAAAAAAAACCATGGAGAAGCTGGAGCAAACAAAAAGAAAACCATGGAGAAGCTGAAGGCTGAAGCAGGCCAAAGAGCAGCAGCCAGCAGGAGAAAGGCAGAGC
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| CDS seq | ATGATACACCTTAGGTGCTTAATTCTCCCAAATACTAACCGTCCTCTACCTGATTCACTCTGCAGTCTTTACCATTTACAAATGTTGTTTCTACACCGGCATTCATGTTTTATATGTGCAAAACATGTCATCTTCCCCAAAAACCTGGATAACCTGAGCAATATTTTGACTATTGATGTTCATAGGGATCTTACTGTTGATTTGGCTTCTGTGGGGCATATGCCATACCTCCGGGCTGCAGGGGAATTCTGTGTTGAGAAGAGGAAAGCGCAGGGGCTAGAGGTGCTGCATGACATGAATGAAAAAAAAAACTAG |
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| Protein seq | MIHLRCLILPNTNRPLPDSLCSLYHLQMLFLHRHSCFICAKHVIFPKNLDNLSNILTIDVHRDLTVDLASVGHMPYLRAAGEFCVEKRKAQGLEVLHDMNEKKN |
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| Function | - | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| Os06g0621600 | Os06t0621600-01 | Chr06 | 24954264 | 24959578 | - | irgsp1_rep | ||
| CDS seq | ATGATACACCTTAGGTGCTTAATTCTCCCAAATACTAACCGTCCTCTACCTGATTCACTCTGCAGTCTTTACCATTTACAAATGTTGTTTCTACACCGGCATTCATGTTTTATATGTGCAAAACATGTCATCTTCCCCAAAAACCTGGATAACCTGAGCAATATTTTGACTATTGATGTTCATAGGGATCTTACTGTTGATTTGGCTTCTGTGGGGCATATGCCATACCTCCGGGCTGCAGGGGAATTCTGTGTTGAGAAGAGGAAAGCGCAGGGGCTAGAGGTGCTGCATGACATGAATGAAAAAAAAAACTAG
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| Protein seq | MIHLRCLILPNTNRPLPDSLCSLYHLQMLFLHRHSCFICAKHVIFPKNLDNLSNILTIDVHRDLTVDLASVGHMPYLRAAGEFCVEKRKAQGLEVLHDMNEKKN |
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | None | None | None |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_06g0621600 | RBH | 0.0 | 0.0 | 0.415951 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os06g41640 | RBH | 0.124991 | 0.145678 | 0.349249 |
| Nipponbare | IRGSP 1.0 | RAP-db | NA | NA | NA | NA | NA |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_06g0022700 | RBH | 0.000000 | 0.000000 | 0.000000 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_06g0022510 | RBH | 0.000000 | 0.000000 | 0.402157 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_06g0022600 | RBH | 0.530510 | 1.126720 | 2.169543 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_06g0022290 | RBH | 0.038255 | 0.053408 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_06g0022740 | RBH | 0.163133 | 0.000000 | 0.679083 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_06G0392600 | RBH | 0.0119685 | 0.059671 | 0.060281 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_06g0022190 | RBH | 0.0 | 0.024995 | 0.283764 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_06G0372000 | RBH | 1.2442655 | 4.2603205 | 3.8631925 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_06g0022660 | RBH | 0.037759 | 0.0 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_06g0022570 | RBH | 0.0 | 0.470782 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_06g0022220 | RBH | 1.559182 | 5.764866 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_06g0022960 | RBH | 0.0 | 0.026449 | 0.104927 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_06g0022560 | RBH | 0.0 | 0.000000 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_06G022240 | RBH | 0.244803 | 0.498085 | 0.810879 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_06g0022520 | RBH | 0.074060 | 0.0 | 0.611186 |
