Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| Os06g0531200 | OGI:06055070 | 16/16 | Nipponbare | IRGSP 1.0 | RAP-db | Chr06:19824521-19829594 | ||||||||
| Gene Symbol | OsDJ-1E, DJ-1E | ||||||||||
| DNA seq | TACCATCATCATATACCCCCCCCCCCCAACCCAAAGGTGCAATATCCATCTCTTTTTATTGCATTTGTACGGTTGTACACATAACAAGACGTCGTGTTATTGTGGAAGAGAAAGCCAAAAAAAAGGATTACGAAGTGCTTTCCACCACACCAGCTACGAGCAAAAGGATGCCTCATATTCAGAGTCTGACTATGGTGTTGTCTTACACGTAGTATGTAACAACACAACTCACATGAAGACCATGGTTTTGGCGAGCTCGACGGCCCTCTCCCGACCAAACAGCTTCTCCACGATGGCGAGAGAGAACTCCATGGATGTGCCTGGACCTTGGCTGGTGATTAGGTTGCCATCAACGACAACCCTGTTCTTGCATTCGCTTTGGTCCGAGAGCTTGTTCCACATACCAGGAAAGGATGTAGCCTTCTTTCCCTGATGCAAAAACATGTTACATACCAGTCAAAAAAGATTTGTCTTCCCAGTAAAAGAACAGGTGTTTCTGCATGTTTGCACCACAAGGATTTATGTTCATCGCATGATAGACAGCTGTATATACCTTCAGCAGGCCATGTGGTTCAAGGGCGATTGCTGGCGAGGCACATATAGCTCCATATAGCTTGTTTGCCTCAGCTTGCTTCTTGATCAGACCAATCAGTTTATCTGACTTTGCATATGCTTGGGCACCACCAAGACCACCCTACAGAAAACATGGAAGGTCATTTAACCAGCAAGCTAGATTATAAATTATTAGACATTAAATTAATCTAAAGTCCAACGTTCCCTTGAAATACTTCTTGAAGTCCATTTTTCACCTTAACATTCAAAAAACAGTTGTTTTCGCTCTTAAATTCCAAACGAGACAAACACCTTGAACCATATTCCATCACCTTATAATTAATATGGCAGTGGTTTTTGCAAATTTAGACATATATGGATACATGTTTTGTTGGTGTAGAACTGTAGACACCACGTGGTTGAGTACACATCAATGAAACTCAACTAATAGTTCAAATCAGCAAAAACTACCACCATATTAACCAAATCCACAATGGAATAGGGTGGAGTGTTTTCTCTGTCTGCTTTCAGAATTTTTTTTTTTTTTGGGGGGGGGGGTGCAAATATCTGTTATTTAGTTAAGGTCAAAATTGAAATACCCATTGATTCACTAAACTTACTGGTAACAAAATGAGATCATATTGCTGCTTAAGAGCATCATCCAACAGAACATCAGCAACCATCTTCACTTTCCTGGATGCAACAATCTCCAAAGTTTCCTCCAAGGACGCAACGACAACATTTGCTTTCGCCCTTCTGAGGATGTCGATTATCATAGTTGCTTCCATCTCCTCTGTCCCATTAGCAATTGGTACAAGAATCTGCAGCACAAGAACAAGATCTTGCTGGTGAAACCAAGCAGCAACACATAGTTTGAACATGTAAGCTGTTACTCCATGTTTAAGCCAATGACAAAAATGATAGAAAGCAGAGAAGCAACAAGCGTAAGTTCACCTAAATAATCACATGTAACATCAAACCTGCAAAATAACTTCAATCGATTGATGGTCCACAAAAGAGCATTTTAATTCCTTGACAGTAGCTACTAGGATTTATCTTTAATCATGTGCTAAATCCTTAACAAACATAAATCCCAACTCACATCCCTCCTATCATATTATTAATCCAGCTAGACATACTATATTTCATCCAACAAACTCTTGAAAGTAACCGACAAACTACATGCATCACTACCCAGCCCTCATCTTAAATCTATCAAATCTAGGGATTTAGCATCACTAAGAACGCAGTGAATGAAAAGAGTTATGAAGAGGTTTTGCCATTTCAAGATGACTTCCCTTCTCTTGTCATTAAATTACACAGTTTACCATATACTGCCTTATCCTACCTCTTGGTATTTAGGAAGCTTTACTAGAAAACTTGCCCATTTTCACCAAACATAGCAGACTACAAATTGTTACTCCAGGCAACATAAAATTTTATATAGTGTATACATTGCCATGAAACAAAAGAAAATGAGTGCTACATGTAACAAGTAGTTTCCATACTGAACTTTGAATACCTGAGGTGTTTCACCAACATTCCAACTAGTTGAATTCAACTCTTTCAATGAGAACTCCACACCATGCTGGGGGCGCATGACCTTAAAAGATGTAAGCACTAAATTAAATGCAAGCATCAGCTGTGGAAAATATGTAAACACTACTGAAAAAATTACAAACCCGAAAAAACAAAACAGCAGTACAAGTATCATAGAGAAAAGCTACTCAATCGAAATTAACCTTTGCAGTCCATGTGTGAAAAAAGTACTTCAATGTACGAATTTTATAAAAACAACACATTGAAGAAATTTCAAATGCAACTATAGCCAGTTTTGACTAGGAATAAGATGGCAGGGAGCAAAGGCTTTTTAAGGCCAATTAGATTCTACATATCCCAAAATGGCCATAGTTTCAAATAGAATGTTTTCTAGTTTTAGCATAAACTATAATACCTCAAGTTAGAAGATAGAAATTTCATCATGATTCACCACATCAAAAAATACTAATGAGTTAAAATCTTCATCTCAAGAATGATATCAAACAAAAGTAGAATGAAGTTGCATGGAAAAGTCTGCGATTTAAGATTTGATGCAAATGGTTTCTCATGCATGACAAGGTAAATGTATTTCAATTAATTCTGCATGATGAAGCATAAATTAGCACATAAGATGATGAACACGAATGTCATCCGTGCAATATCCACACTTCAAATTATTAGTCAAAGCAGGCACACTACACTTCTACGCTAAACAGCAGTCTAATAAACTTCAAATAAGAAACCACAGAGTAAAGTTTTCTCTAAAATGCAGAATGCAAATATTTACCTCCAAATTATTCTTTTCAAATGCCTTTCTGCAATGGAAATATAAGAAAACGCATTCCTAACAACTGTATGCAATCCAATGTTCAAAACGATTCCTACCATTGGACCAGCAACTTCATCAGCTTTTTCTTTGCCATATAATTGTTCGACCAAAACAACAGAATACTCCATGGCCGTTCCTGGTCCTCGACTGGTCACACAGTTCCCATCAATCTGCACCCTCGATTCTACAGCATTGACCTCTGAAGGAAGTTTATCCATGAATGAAGGATAACAAGTTGCCTGTCACAAAAGGCAAAACAAGCTTCTTAGAATTGAAAAGTAATAATATTGTGTATGCAAGAGCCAACTAATGATGAAAAGACCACCTTCAATCCATTCAGCAAACCCCATGATCCTAGAGCGACAGCTGGTGCAGCACATATTGCAGCATAAAGTTTGCCCTTTCCTGCGTGCTTTTTAACCATGTTCTCCAGAAGTTTGCAGTCTCTAAGATTGGAAGACCCTGGCATACCTCCCTAAAAAAAACACAACCCAAATGGATCAAAATGTCAGATATAAGCAGGGGGGATAATAGACCAAACCAATTCTTTTTTTTCTGGACAAGCTTTTGGACCCCCTTAGACACTTGTAGCGCAAAACAGAACTGCAGGAGTTACAAATGAGTAGCATGACTGACAATAACATACATGTACATTGTACACCAAAAAGAAATATTGAGGAAAAGGAATGCACATTAATCTGTTTGGCCAAAATTGCTGGGACAATCAAGTTTGAGATGGCTGGAGCATGTTTTATCAGTCAGTGACTCAGGGCTACAGATATGAATGCTATCAAGCACATAAAGCTTCAATAAACCAATATTAGTATTGAATTCTGCTTGCTAGCTTCAGCAAACCATACATGCCTTTAACATTAGGTATCATTAAATCCTAAGTGTTCCATAGCTGAGACCTGAGAATGCCTCACCAGCTATGTCCTTTATAAACATGATCCATTCACCTCAACGGCATCCACCATTAAAAAAACTCAGTCATTAAATTACTGCTCCTGATGTTTTTAGTATTGATGATAGCAGGAGACAGCACATTTACATTTAACATGAAGAAGTACACTTAAGCAAAGCTAAGAAACACGGAAATTTCTTACCTGCAGCTTCTGAGAAGTGGCATTTACCCTCCCCATTCAGGAAAGCACTAATAGAATTCAATTGTCAATTTGACATGCTCAGTGGGTTATAAACTATCATACTTCCTCCGTTTCACAATGTAAGTCATTCTAACATTTTCCATATCCATATTGATGTTAATGAATCTAGATAAATATATATGTCTAGATTCATTAACATCAATATGAATGTGGGAAATGCGAATGACTTAAATTGTGAAACGGAGGGAGTACTTATTATCACTCACATAGTGCCCTCGTGACCTTGTCTTATAACCAAATACGCAATACTTTGATTGTTTTATCACAACATCAAAATACTACAACAGAGCACTAGTTTGCTCGCATACAATTCACAAACTTGTGCTCAGGTCAGGTATAAATGATTTCGAAGGAAACGCAATTAATTTCACTTGGTCAGCGTTGTAAGCGACTCAAAACCACCCATTCTCCCCCATCCAATTTGTGGGTTCCCCAAACACGAAACAACCATGTACAGTTAACACGGGACGCGACTACTGACGAGCCGTGCGGCGGGGTGGGCGGGCAACTCCACTCACCGGGAGCGAGATGAGGTCGAATTCGGCGTCGGCGAGGTCGTCGAGCAGCGCGTCCGCGGCCAGCTTGACGCCCCAGGCTCCGCCGACCTGCGCGGAGCCGGGGTCGACGGAGGCGACGGAGACGTCGGCCCCGGCGCGGCGGAGCACGTCGACGGTGATGACGGCCTCCATCGGCTCCGTCCCGCTCGCGATCGGCACCAGCACCTGCACCATCATCATCACAGACAAACGCGCACACACCATCCCCCCACCTCAACCAGTCAGATTCTCAGGGGAGGGGGAACCAAAAATCCAAAAACACGGCTGCGAGAGGGGGGAACGCTTGCCTTCTTCGCGGGCGGCGACGCCATGGCTGAGGAGGAGGAGGCGAGCGCGCGGGTTAGGGTTTGGAGGCGGCGGAGGTGAGGAGGAGGAGGAGAGGGAGGTGGGGTTTTGAGAGGGGAGCAGAAGCGGAGGGGAGGAAGAAGAGT
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| CDS seq | ATGGCGTCGCCGCCCGCGAAGAAGGTGCTGGTGCCGATCGCGAGCGGGACGGAGCCGATGGAGGCCGTCATCACCGTCGACGTGCTCCGCCGCGCCGGGGCCGACGTCTCCGTCGCCTCCGTCGACCCCGGCTCCGCGCAGGTCGGCGGAGCCTGGGGCGTCAAGCTGGCCGCGGACGCGCTGCTCGACGACCTCGCCGACGCCGAATTCGACCTCATCTCGCTCCCGGGAGGTATGCCAGGGTCTTCCAATCTTAGAGACTGCAAACTTCTGGAGAACATGGTTAAAAAGCACGCAGGAAAGGGCAAACTTTATGCTGCAATATGTGCTGCACCAGCTGTCGCTCTAGGATCATGGGGTTTGCTGAATGGATTGAAGGCAACTTGTTATCCTTCATTCATGGATAAACTTCCTTCAGAGGTCAATGCTGTAGAATCGAGGGTGCAGATTGATGGGAACTGTGTGACCAGTCGAGGACCAGGAACGGCCATGGAGTATTCTGTTGTTTTGGTCGAACAATTATATGGCAAAGAAAAAGCTGATGAAGTTGCTGGTCCAATGGTCATGCGCCCCCAGCATGGTGTGGAGTTCTCATTGAAAGAGTTGAATTCAACTAGTTGGAATGTTGGTGAAACACCTCAGATTCTTGTACCAATTGCTAATGGGACAGAGGAGATGGAAGCAACTATGATAATCGACATCCTCAGAAGGGCGAAAGCAAATGTTGTCGTTGCGTCCTTGGAGGAAACTTTGGAGATTGTTGCATCCAGGAAAGTGAAGATGGTTGCTGATGTTCTGTTGGATGATGCTCTTAAGCAGCAATATGATCTCATTTTGTTACCAGGTGGTCTTGGTGGTGCCCAAGCATATGCAAAGTCAGATAAACTGATTGGTCTGATCAAGAAGCAAGCTGAGGCAAACAAGCTATATGGAGCTATATGTGCCTCGCCAGCAATCGCCCTTGAACCACATGGCCTGCTGAAGGGAAAGAAGGCTACATCCTTTCCTGGTATGTGGAACAAGCTCTCGGACCAAAGCGAATGCAAGAACAGGGTTGTCGTTGATGGCAACCTAATCACCAGCCAAGGTCCAGGCACATCCATGGAGTTCTCTCTCGCCATCGTGGAGAAGCTGTTTGGTCGGGAGAGGGCCGTCGAGCTCGCCAAAACCATGGTCTTCATGTGA
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| Protein seq | MASPPAKKVLVPIASGTEPMEAVITVDVLRRAGADVSVASVDPGSAQVGGAWGVKLAADALLDDLADAEFDLISLPGGMPGSSNLRDCKLLENMVKKHAGKGKLYAAICAAPAVALGSWGLLNGLKATCYPSFMDKLPSEVNAVESRVQIDGNCVTSRGPGTAMEYSVVLVEQLYGKEKADEVAGPMVMRPQHGVEFSLKELNSTSWNVGETPQILVPIANGTEEMEATMIIDILRRAKANVVVASLEETLEIVASRKVKMVADVLLDDALKQQYDLILLPGGLGGAQAYAKSDKLIGLIKKQAEANKLYGAICASPAIALEPHGLLKGKKATSFPGMWNKLSDQSECKNRVVVDGNLITSQGPGTSMEFSLAIVEKLFGRERAVELAKTMVFM |
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| Function | Protein DJ-1 homolog B [UniProtKB/Swiss-Prot:Q9MAH3] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| Os06g0531200 | Os06t0531200-01 | Chr06 | 19824559 | 19829594 | - | irgsp1_rep | ||
| CDS seq | ATGGCGTCGCCGCCCGCGAAGAAGGTGCTGGTGCCGATCGCGAGCGGGACGGAGCCGATGGAGGCCGTCATCACCGTCGACGTGCTCCGCCGCGCCGGGGCCGACGTCTCCGTCGCCTCCGTCGACCCCGGCTCCGCGCAGGTCGGCGGAGCCTGGGGCGTCAAGCTGGCCGCGGACGCGCTGCTCGACGACCTCGCCGACGCCGAATTCGACCTCATCTCGCTCCCGGGAGGTATGCCAGGGTCTTCCAATCTTAGAGACTGCAAACTTCTGGAGAACATGGTTAAAAAGCACGCAGGAAAGGGCAAACTTTATGCTGCAATATGTGCTGCACCAGCTGTCGCTCTAGGATCATGGGGTTTGCTGAATGGATTGAAGGCAACTTGTTATCCTTCATTCATGGATAAACTTCCTTCAGAGGTCAATGCTGTAGAATCGAGGGTGCAGATTGATGGGAACTGTGTGACCAGTCGAGGACCAGGAACGGCCATGGAGTATTCTGTTGTTTTGGTCGAACAATTATATGGCAAAGAAAAAGCTGATGAAGTTGCTGGTCCAATGGTCATGCGCCCCCAGCATGGTGTGGAGTTCTCATTGAAAGAGTTGAATTCAACTAGTTGGAATGTTGGTGAAACACCTCAGATTCTTGTACCAATTGCTAATGGGACAGAGGAGATGGAAGCAACTATGATAATCGACATCCTCAGAAGGGCGAAAGCAAATGTTGTCGTTGCGTCCTTGGAGGAAACTTTGGAGATTGTTGCATCCAGGAAAGTGAAGATGGTTGCTGATGTTCTGTTGGATGATGCTCTTAAGCAGCAATATGATCTCATTTTGTTACCAGGTGGTCTTGGTGGTGCCCAAGCATATGCAAAGTCAGATAAACTGATTGGTCTGATCAAGAAGCAAGCTGAGGCAAACAAGCTATATGGAGCTATATGTGCCTCGCCAGCAATCGCCCTTGAACCACATGGCCTGCTGAAGGGAAAGAAGGCTACATCCTTTCCTGGTATGTGGAACAAGCTCTCGGACCAAAGCGAATGCAAGAACAGGGTTGTCGTTGATGGCAACCTAATCACCAGCCAAGGTCCAGGCACATCCATGGAGTTCTCTCTCGCCATCGTGGAGAAGCTGTTTGGTCGGGAGAGGGCCGTCGAGCTCGCCAAAACCATGGTCTTCATGTGA
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| Protein seq | MASPPAKKVLVPIASGTEPMEAVITVDVLRRAGADVSVASVDPGSAQVGGAWGVKLAADALLDDLADAEFDLISLPGGMPGSSNLRDCKLLENMVKKHAGKGKLYAAICAAPAVALGSWGLLNGLKATCYPSFMDKLPSEVNAVESRVQIDGNCVTSRGPGTAMEYSVVLVEQLYGKEKADEVAGPMVMRPQHGVEFSLKELNSTSWNVGETPQILVPIANGTEEMEATMIIDILRRAKANVVVASLEETLEIVASRKVKMVADVLLDDALKQQYDLILLPGGLGGAQAYAKSDKLIGLIKKQAEANKLYGAICASPAIALEPHGLLKGKKATSFPGMWNKLSDQSECKNRVVVDGNLITSQGPGTSMEFSLAIVEKLFGRERAVELAKTMVFM
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| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| Os06g0531200 | Os06t0531200-02 | Chr06 | 19824521 | 19827829 | - | irgsp1_rep | ||
| CDS seq | GCTGCAATATGTGCTGCACCAGCTGTCGCTCTAGGATCATGGGGTTTGCTGAATGGATTGAAGGCAACTTGTTATCCTTCATTCATGGATAAACTTCCTTCAGAGGTCAATGCTGTAGAATCGAGGGTGCAGATTGATGGGAACTGTGTGACCAGTCGAGGACCAGGAACGGCCATGGAGTATTCTGTTGTTTTGGTCGAACAATTATATGGCAAAGAAAAAGCTGATGAAGTTGCTGGTCCAATGGTCATGCGCCCCCAGCATGGTGTGGAGTTCTCATTGAAAGAGTTGAATTCAACTAGTTGGAATGTTGGTGAAACACCTCAGATTCTTGTACCAATTGCTAATGGGACAGAGGAGATGGAAGCAACTATGATAATCGACATCCTCAGAAGGGCGAAAGCAAATGTTGTCGTTGCGTCCTTGGAGGAAACTTTGGAGATTGTTGCATCCAGGAAAGTGAAGATGGTTGCTGATGTTCTGTTGGATGATGCTCTTAAGCAGCAATATGATCTCATTTTGTTACCAGGTGGTCTTGGTGGTGCCCAAGCATATGCAAAGTCAGATAAACTGATTGGTCTGATCAAGAAGCAAGCTGAGGCAAACAAGCTATATGGAGCTATATGTGCCTCGCCAGCAATCGCCCTTGAACCACATGGCCTGCTGAAGGGAAAGAAGGCTACATCCTTTCCTGGTATGTGGAACAAGCTCTCGGACCAAAGCGAATGCAAGAACAGGGTTGTCGTTGATGGCAACCTAATCACCAGCCAAGGTCCAGGCACATCCATGGAGTTCTCTCTCGCCATCGTGGAGAAGCTGTTTGGTCGGGAGAGGGCCGTCGAGCTCGCCAAAACCATGGTCTTCATGTGA
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| Protein seq | AAICAAPAVALGSWGLLNGLKATCYPSFMDKLPSEVNAVESRVQIDGNCVTSRGPGTAMEYSVVLVEQLYGKEKADEVAGPMVMRPQHGVEFSLKELNSTSWNVGETPQILVPIANGTEEMEATMIIDILRRAKANVVVASLEETLEIVASRKVKMVADVLLDDALKQQYDLILLPGGLGGAQAYAKSDKLIGLIKKQAEANKLYGAICASPAIALEPHGLLKGKKATSFPGMWNKLSDQSECKNRVVVDGNLITSQGPGTSMEFSLAIVEKLFGRERAVELAKTMVFM
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | None | None | None |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_06g0531200 | RBH | 8.464483 | 10.378757 | 12.946736 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os06g34040 | RBH | 5.627286 | 6.187871 | 2.697401 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os01g0217800 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_06g0018270 | RBH | 2.477942 | 16.574116 | 11.868711 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_06g0018100 | RBH | 1.036214 | 2.145528 | 7.294876 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_06g0018200 | RBH | 6.777719 | 11.820007 | 13.930946 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_06g0018050 | RBH | 0.727849 | 0.538800 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_06g0018440 | RBH | 12.739939 | 23.300108 | 29.444052 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_06G0311300 | RBH | 15.2355805 | 16.066424 | 102.22612 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_06g0017920 | RBH | 0.846071 | 1.458341 | 2.983696 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_06G0287000 | RBH | 9.016726 | 10.100016 | 13.287418 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_06g0018320 | RBH | 1.021860 | 0.306647 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_06g0018300 | RBH | 1.567257 | 24.383780 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_06g0017940 | RBH | 12.960965 | 24.048981 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_06g0018660 | RBH | 2.714297 | 1.322910 | 2.630188 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_06g0018100 | RBH | 1.395012 | 6.465042 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_06G018030 | RBH | 1.192357 | 7.638249 | 5.125859 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_06g0018180 | RBH | 4.581137 | 20.058540 | 14.539177 |
