Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| Os05g0491400 | OGI:05065390 | 16/16 | Nipponbare | IRGSP 1.0 | RAP-db | Chr05:24149336-24151542 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | GAGCTAAGACGATCGATTTCATATACTATGCCAGTAAACAGAAGTACGTAATGCTGAGATAATAATCATTGTCATTACTCATTAGCATTACCATTACGGCCAAGCTACTCTAATGCTAAGAAGCTCCAGGTCGACAGAGTCTGCACCGATCGACGCCGACGAGGCTTGCTTCCGGTGAAGAACCTGACGCCGCCGCCGTCCTCTTCTTTTTATTCGTTAATTCATGCTGCCATGATCTAGCGGCCGGTGTCATCGTCGTCCATCCCGGGGTACCTCAGCCGCGGGTTGCTGGCAAAGCTTCATATACATAAGACACAAATTAACAAATTAGCGCAACTTAACATTGATCAGTATCAGCATCAGCATTAGCATTAGCGAAAAACCTATCATGCATGTTCTTGCAGTATCCATCAGAGCAAAATTAAACTGCTTATCATGCATGTTCTTGCAGTGTTCATCAGATCAAAAGTAAACTGCAGATTTGATAATGTGCCATGGAGAAGAACAAGGCAAGTAGAATTATTCACGCCTGCTACTATACCTGCTCGGAGGGAAGTGATCGAACGGCCCGGACGTCGGGATTGTCCCACAGAGATCGTTGTTGGATACATTTCTGAATGAAATTAAGAGCAAGGACAGGGGATAATTTTAAGTATCATGAGGGTGAAGGATAATTGTAAATGTAAATTACGGCAACAAAAGTTGGATCGAGCTGAGTTGTGAATTCTTACAGGATCATGAGGTTTGACAGCCCAGCCAGCTCGTTTGGGATTGGCCCAGTTAAAAGGTTGTGATCAATTCTCCTGCCAAGAGTAAAGAAAAAACAAAAACTCAAACATAGATATCAAAGTACATTTTGCATAGCTGAACAGTACTTTCTGATTTCAGATATAAGTTTTTTTTAAGACTTGTGCACATGAACTTACATTAATTACAGATAATCCGGGCATTAATTACTTGAGTGGAAAAGGTCAGGTGAGGGATGATAACAAATGGACAACGAGAACTTACATGAATTTTAAGGACTTGAGTTTCCCAAGCGACGGAGGTATCGGCCCAGAAATGGTGTTGTTGCACAAGTCTAGGCTAATCAAATTCTCCAGATTACCAAACTCTGGCGGAATTGGTCCTTCAATATTGTTCGAAGCGATTTCCCTAACCCAAGATAGCAAAAGACAGAAAGAGTCAATAAAAACTCCATGTAACTGATGGGCTTGGCATTAAAAAAAAAAAAACTGATGGTCTTGCAACTCTCTACAAAGAGAAGCACTAGCAAATTAAACTACATTGACATTAGTCTGCTAAATGTGCCTTTTCATTTCTTTCTTGACAACAATAACAAACAAAAAAAAACACAACTTTAATTTGCATGATTGATTACAAGAGCTTACATAAATTGTAGCTGGTCCAGTCGCGCAAGATCGGCCGACAGATGGCCGGACAGGTTCATCTCCTCAAGATCTCTGTTAAAGCAAAAAATGGAAACCAAAATCAGGCAAAGAATCAGATGAATTTGAAGAGTATCTCACCCTTTGAAAATCATAAAAAATCCCATTGATTATGTTCTTCTTATAGCCGTGAATCAACGTGACAACATTTGGGGCCGAGAAGGCCCAGCCCAAGAGGTTTGGATCGGGCCAACGAATAGGCCCAAACAATCCTGTGTCCCACGATTTTCCGACCGATGGATTTGCTCCGAGATTCACGCCAAAAACCACGCGAGTCAAACAAAAAACTCAAAAAACTCTTTCGTCTTCCTCCTCGCGACTCCTCGCGCTCACCGCCATTGACGGCCACCTTTACCTCGGAAAAGGATTTGATCCCCGCTAAACTCTCTACGAAATCCAACGCGAAACGATGCGAAACCGGCGAGCTTTCTGCAGCAACAGGAGGGAGGAGGATCGAGGGCTCACAGGCGGATGACGCGGTTGTCGGCGTTGCAGGTGACGCGGAACCAGGTGCAGGGGTTCACCAGGTCGGGGTCCCAGCTCGCCAGCGCGCCGTCGGGGTCGCTCATCCCCTTCCTGAACTCCGTCAGCGCGTCGCCGTCCTGGCTCGCCGCCGCCGCCGCCAGGACCACCGCCACCACCACGACGAGGATGGCGGTGGCGGGGGCTAGGTTTCCGGCCGACGTGGGCGCCATGGTTTGCGGCGGCAACTGCTTCGCTGCGGTGGTGGTGGAGACGTGGAGTGGAGTGCGTGCTCTG
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| CDS seq | ATGGCGCCCACGTCGGCCGGAAACCTAGCCCCCGCCACCGCCATCCTCGTCGTGGTGGTGGCGGTGGTCCTGGCGGCGGCGGCGGCGAGCCAGGACGGCGACGCGCTGACGGAGTTCAGGAAGGGGATGAGCGACCCCGACGGCGCGCTGGCGAGCTGGGACCCCGACCTGGTGAACCCCTGCACCTGGTTCCGCGTCACCTGCAACGCCGACAACCGCGTCATCCGCCTAGATCTTGAGGAGATGAACCTGTCCGGCCATCTGTCGGCCGATCTTGCGCGACTGGACCAGCTACAATTTATGGAAATCGCTTCGAACAATATTGAAGGACCAATTCCGCCAGAGTTTGGTAATCTGGAGAATTTGATTAGCCTAGACTTGTGCAACAACACCATTTCTGGGCCGATACCTCCGTCGCTTGGGAAACTCAAGTCCTTAAAATTCATGAGAATTGATCACAACCTTTTAACTGGGCCAATCCCAAACGAGCTGGCTGGGCTGTCAAACCTCATGATCCTAAATGTATCCAACAACGATCTCTGTGGGACAATCCCGACGTCCGGGCCGTTCGATCACTTCCCTCCGAGCAGCTTTGCCAGCAACCCGCGGCTGAGGTACCCCGGGATGGACGACGATGACACCGGCCGCTAG
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| Protein seq | MAPTSAGNLAPATAILVVVVAVVLAAAAASQDGDALTEFRKGMSDPDGALASWDPDLVNPCTWFRVTCNADNRVIRLDLEEMNLSGHLSADLARLDQLQFMEIASNNIEGPIPPEFGNLENLISLDLCNNTISGPIPPSLGKLKSLKFMRIDHNLLTGPIPNELAGLSNLMILNVSNNDLCGTIPTSGPFDHFPPSSFASNPRLRYPGMDDDDTGR |
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| Function | Leucine-rich repeat protein 1 [UniProtKB/Swiss-Prot:Q5VQP7] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| Os05g0491400 | Os05t0491400-01 | Chr05 | 24149336 | 24151542 | - | irgsp1_rep | ||
| CDS seq | ATGGCGCCCACGTCGGCCGGAAACCTAGCCCCCGCCACCGCCATCCTCGTCGTGGTGGTGGCGGTGGTCCTGGCGGCGGCGGCGGCGAGCCAGGACGGCGACGCGCTGACGGAGTTCAGGAAGGGGATGAGCGACCCCGACGGCGCGCTGGCGAGCTGGGACCCCGACCTGGTGAACCCCTGCACCTGGTTCCGCGTCACCTGCAACGCCGACAACCGCGTCATCCGCCTAGATCTTGAGGAGATGAACCTGTCCGGCCATCTGTCGGCCGATCTTGCGCGACTGGACCAGCTACAATTTATGGAAATCGCTTCGAACAATATTGAAGGACCAATTCCGCCAGAGTTTGGTAATCTGGAGAATTTGATTAGCCTAGACTTGTGCAACAACACCATTTCTGGGCCGATACCTCCGTCGCTTGGGAAACTCAAGTCCTTAAAATTCATGAGAATTGATCACAACCTTTTAACTGGGCCAATCCCAAACGAGCTGGCTGGGCTGTCAAACCTCATGATCCTAAATGTATCCAACAACGATCTCTGTGGGACAATCCCGACGTCCGGGCCGTTCGATCACTTCCCTCCGAGCAGCTTTGCCAGCAACCCGCGGCTGAGGTACCCCGGGATGGACGACGATGACACCGGCCGCTAG
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| Protein seq | MAPTSAGNLAPATAILVVVVAVVLAAAAASQDGDALTEFRKGMSDPDGALASWDPDLVNPCTWFRVTCNADNRVIRLDLEEMNLSGHLSADLARLDQLQFMEIASNNIEGPIPPEFGNLENLISLDLCNNTISGPIPPSLGKLKSLKFMRIDHNLLTGPIPNELAGLSNLMILNVSNNDLCGTIPTSGPFDHFPPSSFASNPRLRYPGMDDDDTGR
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | None | None | None |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_05g0170300 | RBH | 0.074437 | 0.074055 | 1.276557 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os05g41230 | RBH | 0.0 | 0.0 | 11.622063 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os01g0809300 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_05g0004920 | RBH | 0.053878 | 2.604783 | 1.076813 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_05g0004950 | RBH | 0.0 | 2.346508 | 0.398926 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_05g0021730 | RBH | 0.0 | 0.0 | 0.000000 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_05g0004940 | RBH | 0.0 | 0.166894 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_05g0005010 | RBH | 0.0 | 8.201686 | 2.013470 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_05G0374400 | RBH | 0.025665 | 0.0642115 | 0.2286845 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_05g0021380 | RBH | 0.0 | 0.0 | 0.0 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_05G0384000 | RBH | 0.0731505 | 0.0317095 | 0.508208 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_05g0021680 | RBH | 0.0 | 0.0 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_05g0004830 | RBH | 0.0 | 1.582104 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_05g0004920 | RBH | 0.0 | 2.981224 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_05g0004950 | RBH | 0.0 | 1.071620 | 0.195867 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_05g0004990 | RBH | 0.069384 | 4.592939 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_05G004850 | RBH | 0.0 | 0.376169 | 2.008875 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_05g0021640 | RBH | 0.0 | 0.0 | 0.840379 |
