Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| LOC_Os05g41230 | OGI:05065390 | 16/16 | Nipponbare | IRGSP 1.0 | MSU | Chr05:24149269-24151542 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | TGGTTAATTTAGTTCTCGAATAACATAGATAAGTAACATAGCTAGGGAGGCAAAACACCAAGCAACTGAGCTAAGACGATCGATTTCATATACTATGCCAGTAAACAGAAGTACGTAATGCTGAGATAATAATCATTGTCATTACTCATTAGCATTACCATTACGGCCAAGCTACTCTAATGCTAAGAAGCTCCAGGTCGACAGAGTCTGCACCGATCGACGCCGACGAGGCTTGCTTCCGGTGAAGAACCTGACGCCGCCGCCGTCCTCTTCTTTTTATTCGTTAATTCATGCTGCCATGATCTAGCGGCCGGTGTCATCGTCGTCCATCCCGGGGTACCTCAGCCGCGGGTTGCTGGCAAAGCTTCATATACATAAGACACAAATTAACAAATTAGCGCAACTTAACATTGATCAGTATCAGCATCAGCATTAGCATTAGCGAAAAACCTATCATGCATGTTCTTGCAGTATCCATCAGAGCAAAATTAAACTGCTTATCATGCATGTTCTTGCAGTGTTCATCAGATCAAAAGTAAACTGCAGATTTGATAATGTGCCATGGAGAAGAACAAGGCAAGTAGAATTATTCACGCCTGCTACTATACCTGCTCGGAGGGAAGTGATCGAACGGCCCGGACGTCGGGATTGTCCCACAGAGATCGTTGTTGGATACATTTCTGAATGAAATTAAGAGCAAGGACAGGGGATAATTTTAAGTATCATGAGGGTGAAGGATAATTGTAAATGTAAATTACGGCAACAAAAGTTGGATCGAGCTGAGTTGTGAATTCTTACAGGATCATGAGGTTTGACAGCCCAGCCAGCTCGTTTGGGATTGGCCCAGTTAAAAGGTTGTGATCAATTCTCCTGCCAAGAGTAAAGAAAAAACAAAAACTCAAACATAGATATCAAAGTACATTTTGCATAGCTGAACAGTACTTTCTGATTTCAGATATAAGTTTTTTTTAAGACTTGTGCACATGAACTTACATTAATTACAGATAATCCGGGCATTAATTACTTGAGTGGAAAAGGTCAGGTGAGGGATGATAACAAATGGACAACGAGAACTTACATGAATTTTAAGGACTTGAGTTTCCCAAGCGACGGAGGTATCGGCCCAGAAATGGTGTTGTTGCACAAGTCTAGGCTAATCAAATTCTCCAGATTACCAAACTCTGGCGGAATTGGTCCTTCAATATTGTTCGAAGCGATTTCCCTAACCCAAGATAGCAAAAGACAGAAAGAGTCAATAAAAACTCCATGTAACTGATGGGCTTGGCATTAAAAAAAAAAAAACTGATGGTCTTGCAACTCTCTACAAAGAGAAGCACTAGCAAATTAAACTACATTGACATTAGTCTGCTAAATGTGCCTTTTCATTTCTTTCTTGACAACAATAACAAACAAAAAAAAACACAACTTTAATTTGCATGATTGATTACAAGAGCTTACATAAATTGTAGCTGGTCCAGTCGCGCAAGATCGGCCGACAGATGGCCGGACAGGTTCATCTCCTCAAGATCTCTGTTAAAGCAAAAAATGGAAACCAAAATCAGGCAAAGAATCAGATGAATTTGAAGAGTATCTCACCCTTTGAAAATCATAAAAAATCCCATTGATTATGTTCTTCTTATAGCCGTGAATCAACGTGACAACATTTGGGGCCGAGAAGGCCCAGCCCAAGAGGTTTGGATCGGGCCAACGAATAGGCCCAAACAATCCTGTGTCCCACGATTTTCCGACCGATGGATTTGCTCCGAGATTCACGCCAAAAACCACGCGAGTCAAACAAAAAACTCAAAAAACTCTTTCGTCTTCCTCCTCGCGACTCCTCGCGCTCACCGCCATTGACGGCCACCTTTACCTCGGAAAAGGATTTGATCCCCGCTAAACTCTCTACGAAATCCAACGCGAAACGATGCGAAACCGGCGAGCTTTCTGCAGCAACAGGAGGGAGGAGGATCGAGGGCTCACAGGCGGATGACGCGGTTGTCGGCGTTGCAGGTGACGCGGAACCAGGTGCAGGGGTTCACCAGGTCGGGGTCCCAGCTCGCCAGCGCGCCGTCGGGGTCGCTCATCCCCTTCCTGAACTCCGTCAGCGCGTCGCCGTCCTGGCTCGCCGCCGCCGCCGCCAGGACCACCGCCACCACCACGACGAGGATGGCGGTGGCGGGGGCTAGGTTTCCGGCCGACGTGGGCGCCATGGTTTGCGGCGGCAACTGCTTCGCTGCGGTGGTGGTGGAGACGTGGAGTGGAGTGCGTGCTCTG
More
|
||||||||||
| CDS seq | ATGGCGCCCACGTCGGCCGGAAACCTAGCCCCCGCCACCGCCATCCTCGTCGTGGTGGTGGCGGTGGTCCTGGCGGCGGCGGCGGCGAGCCAGGACGGCGACGCGCTGACGGAGTTCAGGAAGGGGATGAGCGACCCCGACGGCGCGCTGGCGAGCTGGGACCCCGACCTGGTGAACCCCTGCACCTGGTTCCGCGTCACCTGCAACGCCGACAACCGCGTCATCCGCCTAGATCTTGAGGAGATGAACCTGTCCGGCCATCTGTCGGCCGATCTTGCGCGACTGGACCAGCTACAATTTATGGAAATCGCTTCGAACAATATTGAAGGACCAATTCCGCCAGAGTTTGGTAATCTGGAGAATTTGATTAGCCTAGACTTGTGCAACAACACCATTTCTGGGCCGATACCTCCGTCGCTTGGGAAACTCAAGTCCTTAAAATTCATGAGAATTGATCACAACCTTTTAACTGGGCCAATCCCAAACGAGCTGGCTGGGCTGTCAAACCTCATGATCCTAAATGTATCCAACAACGATCTCTGTGGGACAATCCCGACGTCCGGGCCGTTCGATCACTTCCCTCCGAGCAGCTTTGCCAGCAACCCGCGGCTGAGGTACCCCGGGATGGACGACGATGACACCGGCCGCTAG
More
|
||||||||||
| Protein seq | MAPTSAGNLAPATAILVVVVAVVLAAAAASQDGDALTEFRKGMSDPDGALASWDPDLVNPCTWFRVTCNADNRVIRLDLEEMNLSGHLSADLARLDQLQFMEIASNNIEGPIPPEFGNLENLISLDLCNNTISGPIPPSLGKLKSLKFMRIDHNLLTGPIPNELAGLSNLMILNVSNNDLCGTIPTSGPFDHFPPSSFASNPRLRYPGMDDDDTGR |
||||||||||
| Function | Leucine-rich repeat protein 1 [UniProtKB/Swiss-Prot:Q5VQP7] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| LOC_Os05g41230 | LOC_Os05g41230.1 | Chr05 | 24149269 | 24151542 | - | MSU_osa1r7 | ||
| CDS seq | ATGGCGCCCACGTCGGCCGGAAACCTAGCCCCCGCCACCGCCATCCTCGTCGTGGTGGTGGCGGTGGTCCTGGCGGCGGCGGCGGCGAGCCAGGACGGCGACGCGCTGACGGAGTTCAGGAAGGGGATGAGCGACCCCGACGGCGCGCTGGCGAGCTGGGACCCCGACCTGGTGAACCCCTGCACCTGGTTCCGCGTCACCTGCAACGCCGACAACCGCGTCATCCGCCTAGATCTTGAGGAGATGAACCTGTCCGGCCATCTGTCGGCCGATCTTGCGCGACTGGACCAGCTACAATTTATGGAAATCGCTTCGAACAATATTGAAGGACCAATTCCGCCAGAGTTTGGTAATCTGGAGAATTTGATTAGCCTAGACTTGTGCAACAACACCATTTCTGGGCCGATACCTCCGTCGCTTGGGAAACTCAAGTCCTTAAAATTCATGAGAATTGATCACAACCTTTTAACTGGGCCAATCCCAAACGAGCTGGCTGGGCTGTCAAACCTCATGATCCTAAATGTATCCAACAACGATCTCTGTGGGACAATCCCGACGTCCGGGCCGTTCGATCACTTCCCTCCGAGCAGCTTTGCCAGCAACCCGCGGCTGAGGTACCCCGGGATGGACGACGATGACACCGGCCGCTAG
More
|
|||||||
| Protein seq | MAPTSAGNLAPATAILVVVVAVVLAAAAASQDGDALTEFRKGMSDPDGALASWDPDLVNPCTWFRVTCNADNRVIRLDLEEMNLSGHLSADLARLDQLQFMEIASNNIEGPIPPEFGNLENLISLDLCNNTISGPIPPSLGKLKSLKFMRIDHNLLTGPIPNELAGLSNLMILNVSNNDLCGTIPTSGPFDHFPPSSFASNPRLRYPGMDDDDTGR
More
|
|||||||
| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.0 | 0.0 | 11.622063 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_05g0491400 | RBH | 0.0 | 0.0 | 47.917778 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os01g59440 | RBH | 5.649399 | 4.125950 | 9.420048 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os05g0491400 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_05g0021840 | RBH | 0.0 | 0.0 | 0.0 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_05g0021800 | RBH | 0.0 | 0.0 | 0.505879 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_05g0021730 | RBH | 0.0 | 0.0 | 0.000000 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_05g0021720 | RBH | 0.0 | 0.0 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_05g0021830 | RBH | 0.0 | 0.0 | 1.579226 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_05G0374400 | RBH | 0.025665 | 0.0642115 | 0.2286845 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_05g0021380 | RBH | 0.0 | 0.0 | 0.0 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_05G0384000 | RBH | 0.0731505 | 0.0317095 | 0.508208 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_05g0021680 | RBH | 0.0 | 0.0 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_05g0021610 | RBH | 0.0 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_05g0021710 | RBH | 0.0 | 0.0 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_05g0021780 | RBH | 0.0 | 0.0 | 0.0 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_05g0021760 | RBH | 0.0 | 0.0 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_05G021200 | RBH | 0.0 | 0.0 | 1.491699 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_05g0021640 | RBH | 0.0 | 0.0 | 0.840379 |
