Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| Os05g0421000 | OGI:05055590 | 8/16 | Nipponbare | IRGSP 1.0 | RAP-db | Chr05:20648628-20649038 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | TAGAGTCTGGAGAACAGGCCAATCTTGTGACTCTGCCATCTTGCTCAAAGATGCTTTGCTGCTGACAAGTTAGCACTAATCAGGAGCCTCACTGTTTAACCAACTATATGTCTACTAGATGTATCTACATATATGGCAGAATGCAGGAGGGCCTCAATTCTTGTGACATATTGCCCCTCTGTAGTATTGTGGGGGAGGCCAGTCAGGCGGTGTATGTATATATTTGTCTGACACTAGAATGCCTTAGCCAATTTTTGGATCCCAGGCACCGTGCCTTTTGGCCTTCGGATGTATTCTGTGCCCATCAGCTACCTGTGTTTATGCTACAACAAGCAAAGTACTTGGGATATTTGCAAGTTGTAACAGGTCTTATATTTGTATGTGTTTATGCACTCCTTTTTGTTCTTTTAG
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| CDS seq | AGAGTCTGGAGAACAGGCCAATCTTGTGACTCTGCCATCTTGCTCAAAGATGCTTTGCTGCTGACAAGTTAG |
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| Protein seq | RVWRTGQSCDSAILLKDALLLTS |
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| Function | - | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| Os05g0421000 | Os05t0421000-01 | Chr05 | 20648628 | 20649038 | + | irgsp1_rep | ||
| CDS seq | AGAGTCTGGAGAACAGGCCAATCTTGTGACTCTGCCATCTTGCTCAAAGATGCTTTGCTGCTGACAAGTTAG |
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| Protein seq | RVWRTGQSCDSAILLKDALLLTS |
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | None | None | None |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_05g0421000 | RBH | 0.594024 | 0.0 | 0.000000 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os05g34790 | RBH | 0.000000 | 0.152634 | 0.000000 |
| Nipponbare | IRGSP 1.0 | RAP-db | NA | NA | NA | NA | NA |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_05g0017550 | RBH | 0.073720 | 1.018294 | 1.847583 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_05g0017550 | RBH | 0.0 | 2.442575 | 1.115527 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_05g0017380 | RBH | 0.0 | 1.035031 | 4.277833 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_05g0017390 | RBH | 0.000000 | 0.068745 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_05g0017600 | RBH | 0.0 | 8.219387 | 10.839128 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_05G0315600 | RBH | 2.7324075 | 3.4250525 | 8.356867 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| Zhenshan 97 | ZS97RS3 | HZAU | NA | NA | NA | NA | NA |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_05G017020 | RBH | 0.135361 | 2.346714 | 1.883420 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
