Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| LOC_Os05g34790 | OGI:05055590 | 8/16 | Nipponbare | IRGSP 1.0 | MSU | Chr05:20644708-20648700 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | ATGGCTGATGATGTGGCTAATAGGAAATGTGAACAGTTCGCGTATGGAATGGTAGCAAAGAAGATTGAAAATTTGAGTAGCCTCTTATCATGGCGATTAATGCAAAATTTGTCCAGAGTTATAGTGCACTAACCTAGGTTCTCATGAAAGCTTCCTTTGTTGCTTGGCTGGGGCAAAAGGGCTTGCAATCTCGCTGTCCTGGTTGGCTGGTCTGGGCTCTTAAGCCTTGGCAGTTTGGTCGTTCATGAGTTGTGCATGACACATTTGTAAATAAGTTTAGTGTTTGTGAATTTGTTTTGGTCAGAACTTCCGTCTTGACCTTTTGTATTTTATTTTCTCCTTCATGACAGACTGCTATCCTGTGTTGTTCGATAAGAAAAACCTAGGTTTTATTTTGACTAAGATAGTCTAGTGCTATATAGCTATTATCTGAACAGATCCATAGTGTGAAACTTTAAAGGAACATATATCCATTAGTATAGGGACTGTTTTTAAATTTCAAATCATCAAATGGTTGCAAGTTCACAAATACAGGATCTTGCATTTCGTACAAATAGAAGATATTTAGTGCCACCCTAGTCATTATAAACAAGGAGTATTTTGGCCTCGCATGTTTGTTTGTTGGCTTATCAACCGCAGCCAAAATTTGAATTTTGGAACTTAATTTTAGAGTTGATTTTGCAATTTTTTTTCATTGTATCCTAATTTCCATCATTGGCTCATGAACTACTTGCTCATGAACTACTAAGAAAAGCAGTTTGACTTATAAAAGTTCTACTCAAGTTTTTTTGGTTGCTTCGGTTATTTTTCTAAGGAAATAAGCACCAAACTCTAACTAGCCTTTACGCCCACTGAAATTCATCTTTTTGATCACCAAATGGGTAATACTTTACCATGTGTATCTGGCATCTTGGCCTCTGCCTTATGGCTGGTTATATATTCAGAGATTAATCACATTGGAAGCAACCGCAGTGTTTCATTCACCATTTGCAACTTGCATGTTTGGGACATTATATAATGTTTTATTATGTGCTATTTTCCCGGTGCTATTCTATATTTCCCTTCATTTGGGAAGTTCTTAGGATGTTTGTATGAATTCTTCTTATACTTGAACAATACATCATACATGTATAACTATGCCTAAGCTTCTTTCAGAGCTCTGAACTAGATGTATTTATACAGGCTGAGTTTGAGGAGAAAGCGAGAAGTATGCATGCAGACATAATGAGTCATGTAAGTTCACTAGGAAGCCTGATGAACTTTTATGCGTCATGCAGTACATTCTGAAATTGTTTATAGATTTTAGACCAAATTTTCTTGTTTCCTAATCACTATTCTCTATCTGAATTCCCATTGTTATGTTCTTGTATTAAAAAAAATATAGCCAATACTTTGGTGACATGTTTAAAACTATAGATTTTCGCAGTGTAAGTTCATCTGTTGATAGTATTAGAAGTGACAACCAACTTATTGTTTGTTATTCTTGCAGTGGATCAACAAGGAACTTCAGAGACTGGAAAAATTGATTGAAATGGCAAATGAGAAAGGTTGGCGTGCTGAATATCCTTACCAGATTGAGTTCTTGTGATCATGTTGATATTCACCAACGAGTATATCTTGTTTTCATATTCTAACTCTGCAGCAATTATAAGATTAGTGAACTTTGTACAGTACAGTTATATCCTTGACTGTATATCACGATGCACGAATACATTGACAAAAGAAAGCTACTACGAACACCATCAGAAAGGCAACGTCTTCTTGAAGAAGTCCCGCGAATTATTCCAGATGTAGAGGATAGTAAGGACTCTGGATTTCTAGTTATGGCAGCAAACAAATCTTCTCAAAGGAATACAGGTTTGTTTTTAGGACTCCTAGAATTGTTTCGTGTTCTTCTGCTTTACTACTCAATTCCATATTGTGCCATGAAACCAATGGAAAGTAGGAAGCAATGGGTATAGAGACTTGACAATCACTTAGCCTGATTAGTTTCCATTCTGGGATATTTTTCTTTTGTTACCATTGAACTTTTAAATATTAAAATTAAGGAATGTAACACTTATTGCTGATGAAGAGTTGAATTTTGGATTGCTAATCATTTTCTTTCATGATCTGCTGCTTGTTTCAATGCTTTCCTTCAGGAAGTTCTTAGTAATTTCTTCTGTACAGCAGGTATACCCTGTGATTTTTCTGTAGGTACCAACAGCAACAAGGATAGAGTTGATTGCTTGAAAAGTTGTTCAGGAGAAAAACTTAAAGGTTGGCTTATATAGTGTACATTCATTTGTTTTTTAACATGATGTAAACACTGCTTTTTTGCATAGGGAACAAAAGGGACATACCTTTGTGTTCGGAAAGTTTCTCAGAAGAAAAACATGAAGGTTTTCTCATAAGTATTTACTTCTTGAATGGCTCCCACTATATTCTATCCATCTCTAAAATTTGATGGCAGTGGTGCTTGAAGGATAAGTATAGAACTTCTACCCTCTGAACTACTCCCTCCATCCCAAAAAAACTCAACCTAGGAGGGGATGTGACCCCTCCTAGGACAATGAATCTGGACGGGGTCACATCCTCTCCTAGGTTGAGTTTTTTTGGGACGGAGGGAGTATGCTCTAACTTTAAAATCGATGGCAGTGGAACTTCACTATGAAATAGCTCCCACTATGTTCTATATGCATGTCTAGATTGCATCATTAAGGCCCTAGAATATGTGTTCGCTTAGCAAGTTAGAAGTCTCTATCCTCTGGTGTGGGCTAATAAGTGAGCAAACCATTGACTGTTGTTACATGGCATAACCTCAAGTTTTAATGCTGGTAGTATTTGAAACTGGAGTAAATAGCATTTGCCTACTGAAATCTGGCACTATATCTTGTAAGAAAAATCCTTTGGTTGGCCACTTTCCATGTTTTTATTGTTCTTATTAAATGTGCAGGTAGCAAAGGCGATGCTGATGCACCTGGAACGTGTTTAGAAAAGGTCATCACTAAAGGTTTGCTCTTACTGCCCGTCCTTCCACTAGTTGTTCCACCAGGCACTAGCTGTTCCTGAAGTTTCCATTGCAATTTATTCCCTTTGACATATTCAACATTCTGGGCAACCTGGCTGTTTTTGGTTATTCGTGCTTAATGATGCAGCTATTGAAGTCAATCCTCCTGGTGATATGCCAAGATCACATGTTCAAAACCATGGCACTAAAGGTTTGCACTTACATTTTCACCAGTAATGCTATTCCATCTGGTTCCAAAAGTAGGTCGTGTTGGCTTTATCTGCTTTCTTAAATTTAAACTATTCTAAGATTTCAGGGTGCTTTTAGCTTATTTCATCTTGTTTTACCCTTTATTAAACCTGTCAGGCATAGCTTAACAGTATTTCTTCTTTTTTTTAACAAAAATGGTTTTTCATTTGCTCAGTTTTTTTATTCTACATGTTTAACCACTGTAATGAAACCAGATGATTGCACAGTGCTAATACATGAAAAAATGTCACCTTTGCTCCTATGTTTTCTGGTGCTGATGGGATGGGATCTTATTTTGGCATGCTATCCTTGGTCTTTTATGTCTCTTTTTCGTTTTTTGGTTTCTCCAAGTTTTTCTACTTGTTCATACTATTATTGTAGCTACTGCAGCTGTCAACCCAGGTCAAGTTATTGACATTGATGACGGTGAAGATGATCTGCATGGTAAAAGTGGAGACATGACTGTTGATCTGGATTCTGATGGAAGTGAGGACCATGGTACGAGACAACATGAAGCTAAGCCTAAATTATGCAGTGGTCAGAAAGCTGTCGAAGCGAAGGAAGAAATCTCAGAGCACGCAAGTGTCTGGTATTACAATGATCCTCAAGGTGACGAACAGGGGCCATTTCCGCTGCGGATTCTGCGTCACTGGTCGAAAGCTGGATACTTCAAGGAAGATTTTAGAGTCTGGAGAACAGGCCAATCTTGTGACTCTGCCATCTTGCTCAAAGATGCTTTGCTGCTGACAAGTTAG
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| CDS seq | ATGGCTGATGATGTGGCTAATAGGAAATGTGAACAGTTCGCGTATGGAATGAGCTCTGAACTAGATGTATTTATACAGGCTGAGTTTGAGGAGAAAGCGAGAAGTATGCATGCAGACATAATGAGTCATTGGATCAACAAGGAACTTCAGAGACTGGAAAAATTGATTGAAATGGCAAATGAGAAAGGTACCAACAGCAACAAGGATAGAGTTGATTGCTTGAAAAGTTGTTCAGGAGAAAAACTTAAAGGTAGCAAAGGCGATGCTGATGCACCTGGAACGTGTTTAGAAAAGGTCATCACTAAAGCTATTGAAGTCAATCCTCCTGGTGATATGCCAAGATCACATGTTCAAAACCATGGCACTAAAGCTACTGCAGCTGTCAACCCAGGTCAAGTTATTGACATTGATGACGGTGAAGATGATCTGCATGGTAAAAGTGGAGACATGACTGTTGATCTGGATTCTGATGGAAGTGAGGACCATGGTACGAGACAACATGAAGCTAAGCCTAAATTATGCAGTGGTCAGAAAGCTGTCGAAGCGAAGGAAGAAATCTCAGAGCACGCAAGTGTCTGGTATTACAATGATCCTCAAGGTGACGAACAGGGGCCATTTCCGCTGCGGATTCTGCGTCACTGGTCGAAAGCTGGATACTTCAAGGAAGATTTTAGAGTCTGGAGAACAGGCCAATCTTGTGACTCTGCCATCTTGCTCAAAGATGCTTTGCTGCTGACAAGTTAG
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| Protein seq | MADDVANRKCEQFAYGMSSELDVFIQAEFEEKARSMHADIMSHWINKELQRLEKLIEMANEKGTNSNKDRVDCLKSCSGEKLKGSKGDADAPGTCLEKVITKAIEVNPPGDMPRSHVQNHGTKATAAVNPGQVIDIDDGEDDLHGKSGDMTVDLDSDGSEDHGTRQHEAKPKLCSGQKAVEAKEEISEHASVWYYNDPQGDEQGPFPLRILRHWSKAGYFKEDFRVWRTGQSCDSAILLKDALLLTS |
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| Function | Uncharacterized protein At5g08430 [UniProtKB/Swiss-Prot:Q9FT92] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| LOC_Os05g34790 | LOC_Os05g34790.1 | Chr05 | 20644708 | 20648700 | + | MSU_osa1r7 | ||
| CDS seq | ATGGCTGATGATGTGGCTAATAGGAAATGTGAACAGTTCGCGTATGGAATGAGCTCTGAACTAGATGTATTTATACAGGCTGAGTTTGAGGAGAAAGCGAGAAGTATGCATGCAGACATAATGAGTCATTGGATCAACAAGGAACTTCAGAGACTGGAAAAATTGATTGAAATGGCAAATGAGAAAGGTACCAACAGCAACAAGGATAGAGTTGATTGCTTGAAAAGTTGTTCAGGAGAAAAACTTAAAGGTAGCAAAGGCGATGCTGATGCACCTGGAACGTGTTTAGAAAAGGTCATCACTAAAGCTATTGAAGTCAATCCTCCTGGTGATATGCCAAGATCACATGTTCAAAACCATGGCACTAAAGCTACTGCAGCTGTCAACCCAGGTCAAGTTATTGACATTGATGACGGTGAAGATGATCTGCATGGTAAAAGTGGAGACATGACTGTTGATCTGGATTCTGATGGAAGTGAGGACCATGGTACGAGACAACATGAAGCTAAGCCTAAATTATGCAGTGGTCAGAAAGCTGTCGAAGCGAAGGAAGAAATCTCAGAGCACGCAAGTGTCTGGTATTACAATGATCCTCAAGGTGACGAACAGGGGCCATTTCCGCTGCGGATTCTGCGTCACTGGTCGAAAGCTGGATACTTCAAGGAAGATTTTAGAGTCTGGAGAACAGGCCAATCTTGTGACTCTGCCATCTTGCTCAAAGATGCTTTGCTGCTGACAAGTTAG
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| Protein seq | MADDVANRKCEQFAYGMSSELDVFIQAEFEEKARSMHADIMSHWINKELQRLEKLIEMANEKGTNSNKDRVDCLKSCSGEKLKGSKGDADAPGTCLEKVITKAIEVNPPGDMPRSHVQNHGTKATAAVNPGQVIDIDDGEDDLHGKSGDMTVDLDSDGSEDHGTRQHEAKPKLCSGQKAVEAKEEISEHASVWYYNDPQGDEQGPFPLRILRHWSKAGYFKEDFRVWRTGQSCDSAILLKDALLLTS
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.000000 | 0.152634 | 0.000000 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_05g0421000 | RBH | 0.594024 | 0.0 | 0.000000 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os01g66140 | SBH | 0.936583 | 1.107512 | 0.833124 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os05g0421000 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_05g0017550 | RBH | 0.073720 | 1.018294 | 1.847583 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_05g0017550 | RBH | 0.0 | 2.442575 | 1.115527 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_05g0017380 | RBH | 0.0 | 1.035031 | 4.277833 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_05g0017390 | RBH | 0.000000 | 0.068745 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_05g0017600 | RBH | 0.0 | 8.219387 | 10.839128 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_05G0315600 | RBH | 2.7324075 | 3.4250525 | 8.356867 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_05g0017090 | SBH | 0.127633 | 0.221174 | 0.354606 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_05G0325700 | SBH | 3.961295 | 2.652781 | 55.623861 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_05g0017440 | SBH | 0.000000 | 0.0 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_05g0017330 | SBH | 0.039930 | 1.182216 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_05g0017460 | SBH | 0.000000 | 8.535607 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_05g0017480 | SBH | 0.054214 | 0.433628 | 0.152951 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_05g0017530 | SBH | 0.000000 | 0.000000 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_05G017020 | RBH | 0.135361 | 2.346714 | 1.883420 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_05g0017330 | SBH | 0.000000 | 6.068823 | 5.086722 |
