Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| Os05g0163400 | OGI:05009950 | 15/16 | Nipponbare | IRGSP 1.0 | RAP-db | Chr05:3718329-3725414 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | GCTTTTGAGCGAAATTAACTAACTTGGGAGATTTACATTGCACATAGGTTTTGCTTGAGTTTATAATAGTCTAATAGCTCACAAAATAATTCCATATCGACCGAGATAACTTATTCACAAGAGCCCACAGATTGCGGAGCAATGGAGACAGGCATAATTTGGCCTGACCTTGAACTGCATCATTATATAAATGGAGGGGAAGATCAATTGGTCCCCTCATCAGCTGCCTTCATCTGCGGCAGCAGCTTTGCAAACTGGGCAGGTGTTCTTCACCTGCAGCCACTTCTTGATGCAATTGCAGTGAAACCCGTGGCCGCATTTCAGCCTCCCAAGTGTGTCCTCATGCTTGTATTCCTCCTGCAGTGAAAAAGAGGTTGTGGATTAAGTAACTTGTATTGCGTAAAATGCGCTGCGGGAATCGCTATCATAGTAGGTAGATTGGTACCATCCACTATCTTACCAGGCAGATTACACATCTTTCATTGTCCTGATCATCCTGCAAATGACTACTGCTGCAGCAGGCTACCTCCATCACACAGCCAGAAATTTTCTCATCAGCGAGGCCAGTGTTCACATGGCCTATGCGTTCTTCCAAAGCCAGCAGCTCCTGTGTATAGAAAAAGTTGCATTTGTTTAAATAGCATTCTAAAGCTGCTGTGGTATTAAAGAGAAAATTGATTCTTTCTACCTCATAGCTCATGTCATCAATGTCCAGTCTCATGTCCCAGTGAGGATCGAATGCTTCTCTTGATTCATGGATAACTAACTGATCCAGCATCATAAACCGCTACAAAGAGTGAAAATAGATTAGATGCGTGTTCAAAATTTTAACATTGTACTGATATCAAGAGGAGAGAATAATATCTACCTCAGCTGCTGATCTTCCCAAGTTATTGTCTTCAATCATCAAATGATGAAAACCATGATAGGAATCCCTCATCCTTCTACTCCTTGCACTACCACTGCCCCCTACAGATACATGCCTTGGATGCCTCAAATGTGCAGCAGCTTCAGCATGAAATGGCTGGACACTTGATGATGCTGCAGAGGTTGCAGGTGGATAGCTAGGGGCAGCAGGTGGATAGCTAGGAATAGCTGGCTCATGGGAGACTGCTCCAGGGTTGGAAGAAGATGCAAAAGCTGGAGGAGGATAAGTGCGTAAGTTGTTACGATGAGCTGATCTAGGGGCGTACCCACCATGAGCAAATGGTGCACTGTCACAAGAAATAGGAAGCGTTGGCACAGGTGCACTTATGTTGGTGCTCTGTGGAGCAGGATAGTATGGCCTCTCTCTGAATGCTATGCTACTACCATCAGGCCCTAGACAAAAACAGAGAAAGGTCTTAGCTTCTTAAATAATACCAAATTCAGAGAATGGGCATACCACCTTATCAGGAAGCACACATTTCATTTGAAACTGGACTAGATTAAAATTGAGTGGGAAAAAGCTATGCTTGAAAGGAAGTAGTTGCATTAGTCTACTAGATGAATCATGAATGCTGATATAGTCATAATTCATAAGAGTTGGGTTTATCTCAACAAACAGAAGAAAAAAAAGTAGTAGTTGACATATGAGATATGATTACGTACCTACAGTTCAGACTAAAGTACGCATCAGATTAGAACAGAAGCTGCAAATAGAAGAGAAGAAGTCAAAACTAACCTGGAGGAAGAATTCTTGGATGCACAGATAAAGGAGCTCTGTCACGTTGTACTGGTGCACTTCCAAAAGGACCATTTGCATTTGGATGGTATGGTGGCACATTGATGCTGCTTGACGGGCAAGCTGCAGCTGGACTTTGTTCCAAATGGATAGTACTATGATCATGTCTTCCCCTCACATTCCTCTGAGATCCTTCATGATTAACATAGCGGTGATCATTCCAGTGGTTCGAACCCAAGTGTGAGGGCATTCGAACACAGGATTCAGGAGGTGGAATAGGATTTGGAGGCATGGGCCGAGAGAACTGAGTATTGGAAGAACTGCCAGCATAATAATTTCCAACACCGAATCCATCTGTAGGATGAATGATGGGATTTCTTCTCTTCAATGCAACCCTTCTGCCATCCACATGGGAACTTGGAATGAAATTATCCTCGGATCCGTGTGGATAGCTTGAAGCAGGCATATGTTGAGTATTGTATGGTGCATAGCTACCACTAGAGCTTCCAGCAGGTGCATGACCAGAATATGAAGCATGGATGGGGGCTCTATTCTGCTGACCATAAGCTTGGCCAGCATAACTTGAAGACGGAAGATCATTCGATCTCATTGTGTTACCCACATAGCCAGACGATCCAGCTCCGTTAGCTGGATCACTCCTAGGATGCATAAATAACTTTTGGCCTGGCATAATAAGGCACGAGTGAAGTAAATTTACCATACTTGAGATAATGAGAGGATTATGAACACTTAGGAAGTAATTCAGTTTAGTCCATGTACCAAAAGGTGGAGGTTCATTGTTTAGCCTGTCCATATGATCCATCCGGGACATCTGGGAATTATTATACTGATGTCCAGCCATAACACGTGAACAATCTGATCAAACTTGGCTTAATCTGGGAAAACAAGTTGCTCTATTAGTTTTCCAGCAAATCTATTGCAGCTGCAAATGGACTGTAAACATGAAGTTTTAAACTAGAAAAAGAAGGGCAAGATAATATATGCATAATCACAAATTCATAAACTTCAGGAACAAAGCATTTCAACCTTAGAAGCGTTATATTTGAGACCTGAGTCACACAGATCTGAGATGCCATGGGCCAAATGATTCATCATGTCCAGTGTCTTACTTAATTTAACACAAAGCATTCTACACATATGAAAGTTCCTGTCATACATATCCAGGAACACTTCGAAGGAAATCTGAGCATTGTATTCAGACAAAAAATAAGCCAAAACAAAGGCTGTTTTGGCCGCAGAATAGCAGTTCCAGATATAAACCAGAAATGGAATTGCATACCAATCTGTTGCAGGAAGCAACAGTTCGACACTTAATTTAAGAACCAATGCATAAAGACATGGCTTTGATAAAGGTGCAGCTGTTGAACAATTCGAAATCCACCAAAATTTCATGACTACTTTGCAGGATAACTATGACACCGATTACATTTCCCCATGACAACTTAAAGTCTAAACAGTACCAAAAATATATTGTGCCCAAATCCATGTTTGTGTTGTACACATAAAATTATTTGCACCTTTTCATACATGATGTTGGTTATATTTCATGGGGGAAAAGATATAATCAAGAAAAGGCAGAGTTGATAGATTGCAGCAGTCTCAGTAAAAGTGATAGCTCAAAACATTGGTTGTGCTGCATGTGTAGATTCTAAGAAGCATTCTGGTTGTTTTAATATGTTTTGACTTCAAGCTCAAAAACATACAACATTTCAACACTATTCACCTATTAATATGGTTATATTTACATCTTCAGGCATGATTTGAGACAAAATAGGTCCAAATATCAAGACTACATTCATCTTTTCTCCAAAGGACAAACCAACATAATATTGGCATACATGTTACAACAGCATATGAATACCATGTTTCACAAAAAACATAAAAATGTGTTTGTGGATACTAAAATAGCTTTATATTTCTTTTTTTCCCCAATTATAGTATGGCCGATAACAAGACAACATCAGAACATCAAGGAACATCAAATGCATTGCAATCTTATGTAACAATGACAATACAAGTAGCAAAAGTAGAAACAAATTTATAACTAATTTGTATGTATGACAACACTCTTCCAACAGTACAGTTATCATTCACATTCTAGCAAGTAGCAAGTATAAGAATCTGACTGAATCTCAAATATTTACATGGAAAAGGATAAAGCCCTTGTCATATTGAGCTATGACATGTGGGAGAGATATCTGTACATAATATTAGAAAAACAAAAGAACAACACTGGATGTGTAAAACTTAAAAGGTGTAACGCTAACTAATAGCTTCAGAATAGCCAGGCAAAACCATCAAGGCGGATGGTCATAGTATAACAGTGGAACAAGCCCCGTTTTAAATGATGCCAGATGTACGGCATTGCTAAGGTTCCCTTCATGGCATTGTTGTGCTTGTTTATTCTGCTTATGAGTAAGTGCATCTTGTTTCAAACACCATCAGTTGACCTACTATTGACTAGCCTCTCTTTCCTTCCACCTCCATCAAATGGATATCTCCAGAGAAAATACTCAGTGCAATCAGTTCTGAACTGCTGCTTCAAGGGTCCAGGTACCGCCATCACCAAGTCAATTCTATATGCTAAGCTGATTTTGACTTGGAAAGCACCTTCAGATCAACTAATATGGTAGAAAACATTTAGCTCTTTAAGTTTTCTTTCCCAGATTTTACACCCATCTATTTGCGAAGTAGTTCACACTCCTCCAGTCAATACTTCCAAGGAACTCAAAATCCTTCTCTACATGTTAGCAATGGGCCATGAGACTATCAATGCTCTTCATACACCATCACTAAGTACTAAGCTAATCGTCGTAGGTGCCCCCTTTCCAGTCGTCAGACGAACAAAAAATTCAGCATCAAATGACAATGTATCAATTGCCTCATCCAAAACCACATTGGAAGGCCTGACTTGTAATTTATGATATAATTGCTGTTACTATCTTGCAAGAGGTGTCGCTTTCCCCACTCTAAGGGCAATGCAACTCCAACAATGATGTTAGGCCAATGTTCTTATACTGAGGACAAAGCACATGTCCTCAAATGGCATATATCAACTGGAAGAGCTCTTCCATTTGCTGCACCAGTAGTCAGCATTTAGCATCAACAAAATGATTATGGAGCCCAAAACACCCATTTGTTACACCTTAATGTAAGCTTGATTTTGGTAAATCAAGGAAAATAAAACTCTCCATTACAGGGAAGAATCAATTAGTACCTGCAATGTCATTAGTAGCTCAGTTCAAAGTATTAACAGTTATAATACCCTGGTAAAGGTATTACACAACATTTGTATGATAAAAAGCTAGGTAGTATTCCCAAAGATATAAATTCCCCTTGTTTTAGTTTTCATTTTTAGAGTTAGAACAGCAACAAACTATAAGGGCTAGAGAAAACAAAGGAAACTATTATAAGTTTATAACAGTTTGAGAAAAGGGAGAAGAATGAGAAGGTATATGTCCTTTTGTAAAGGTGAGAATGACACAAAGGATTAAGATGATTAAAAGTGATAACTTCCAATTTACTCATTATATATATGCAACTAATATGTCTGGAACCATTCACTAACCTGAATACCTGACCATCAGATTATTGGAAGAAATGGCAATTGCTTACCCAACCTAATTCCCGCGTGTCCCAAATGTGGAGTCAAACACACAACATAACTGAATCATGTTCCAAAGATTGTGTCCAACTCTAATAGATCTTAATAACAGCTTTCAAGGTCGTGGGTTATTGTGGAAGCCGAATCTCACTATAGCCTGCATTTGCATAATAAATGGTGGTTTCGTGGCATTTCTAATAAAATAAAATACTATATAGATAGTCTTGAAATGTTAATAAGGAGTACCTGAAGATGCAGAAGACATGTTGTGCAAGTGATGTTGAATTTCAAAGCAAAGGACACGGAGTTGTACCTTTGACATATTGAACATTTCTGCTTCTAAGGATAAACCGAGGTTGTAGAACTTATATGTTCTCTGTCTGATGGAAGACATGGAAATTTAAGAACCAATATGGATGGAAGGGTTAAAGGGATGCTTTCCATTGGGAGAAGCATCATGAGAAGAAGGTACACTTGAAGGTTCAGATATAGCATGAGTTATACACGTCATATAATTTTTTTTCTATCCGTTGATCATTTAGATGCTAAGAAATGACATGAATTGCATTTCTATTACATAAGAAACTGTGATAACACATTAGATAGTGTAGTCCCTTGTAGAAGAGTTCAACTAAAGATGCCATGCTAGGCTGCTAATAGACAGGACAAGGAGTCAAACAAAAATGTTTGCTGACTTAAAAGTTACACGGGTCAAATAACTCTTCTCACTGAACTATTCTTACATGGACAATAAGAAGAATAAAGGACCACTTTAATTAGTAGAGCTTAGCTCTTGAAGTTAAATTTATGATGTACTTTTACTATGTCAATATTGTGCCTAAGAGGGAAAATAAGAAAAATCTCCAAAGGTATATAGTTGGTGGCTCAAGTATGTATGAGACTCTCGAACTAAAGTGTAGCAACGCAAAAAAGGCTGGGCCAGAAGATGCTGACTCCTTGATAGAACTGAAAGACTCAGTGGTGGTGAGGAACATTTTCCAATTAAATGCGTGATTTGAACAAGACAAAAACTCAAATAATTTTACTACTAAACAATCACACCTACGACTCATCCATAGAAGCTAAAGCACAAAGATAAGTTCCAACAACTGATTAGGGGGCGAGAACAACCTATGGCCAAAAGATTAGACTGACAAAGATAAACAGTTAATTGCAACTAGGCAAACAATAGTTATGAACAGACAGGATCGCTGTGAACGGCTTGTTTGACACCAACAGGACGCCCCAATAGAGAGAGTTCGGTACGGATTAGCGCGTGATTCCAGTCACAGGAGATGAAAACTTCCTTCGCAGCGGAAATCACATGATCTCAAGCACTCTGAAACCTGAATCGACCAATCGCGCCGCTGTACATCACACCCGCCTCATCGATTATTAAGCCGACGACGAGTAATCCCAGAAATTCCCCCATCAATCCGACCACGTCCGATACCCGATCACGCTCCGCTCCCGTCACGCACCAACAATCAACCGCAGGAAATGGTCTACCCGGCGAGAAAACCCCACCCGATCAACACAAACCCTTGGATTATTACGCGGGGGGAATTTGGGGGGAGCGAATCGGAGGGGAACGGGGGCAATACCTCCTCGTGGGCGGCCGATCCAGTAGACGGCTCGTCCTCTCCGCCGCCGCCTCCTCTCCCCCCACCACCGGAGGAGGAGGAGACGAGGGTTTGGTCCTCTCTCTCCTCTTCTTCGCGCGAGCACGCAACCGCAGCGATGGTTTCGTGGAGCGACGCTGTTTGCTTCCTCCTCGAAGAAAAAAATAAAAAAGAAA
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| CDS seq | ATGGCTGGACATCAGTATAATAATTCCCAGATGTCCCGGATGGATCATATGGACAGGCTAAACAATGAACCTCCACCTTTTGGCCAAAAGTTATTTATGCATCCTAGGAGTGATCCAGCTAACGGAGCTGGATCGTCTGGCTATGTGGGTAACACAATGAGATCGAATGATCTTCCGTCTTCAAGTTATGCTGGCCAAGCTTATGGTCAGCAGAATAGAGCCCCCATCCATGCTTCATATTCTGGTCATGCACCTGCTGGAAGCTCTAGTGGTAGCTATGCACCATACAATACTCAACATATGCCTGCTTCAAGCTATCCACACGGATCCGAGGATAATTTCATTCCAAGTTCCCATGTGGATGGCAGAAGGGTTGCATTGAAGAGAAGAAATCCCATCATTCATCCTACAGATGGATTCGGTGTTGGAAATTATTATGCTGGCAGTTCTTCCAATACTCAGTTCTCTCGGCCCATGCCTCCAAATCCTATTCCACCTCCTGAATCCTGTGTTCGAATGCCCTCACACTTGGGTTCGAACCACTGGAATGATCACCGCTATGTTAATCATGAAGGATCTCAGAGGAATGTGAGGGGAAGACATGATCATAGTACTATCCATTTGGAACAAAGTCCAGCTGCAGCTTGCCCGTCAAGCAGCATCAATGTGCCACCATACCATCCAAATGCAAATGGTCCTTTTGGAAGTGCACCAGTACAACGTGACAGAGCTCCTTTATCTGTGCATCCAAGAATTCTTCCTCCAGGGCCTGATGGTAGTAGCATAGCATTCAGAGAGAGGCCATACTATCCTGCTCCACAGAGCACCAACATAAGTGCACCTGTGCCAACGCTTCCTATTTCTTGTGACAGTGCACCATTTGCTCATGGTGGGTACGCCCCTAGATCAGCTCATCGTAACAACTTACGCACTTATCCTCCTCCAGCTTTTGCATCTTCTTCCAACCCTGGAGCAGTCTCCCATGAGCCAGCTATTCCTAGCTATCCACCTGCTGCCCCTAGCTATCCACCTGCAACCTCTGCAGCATCATCAAGTGTCCAGCCATTTCATGCTGAAGCTGCTGCACATTTGAGGCATCCAAGGCATGTATCTGTAGGGGGCAGTGGTAGTGCAAGGAGTAGAAGGATGAGGGATTCCTATCATGGTTTTCATCATTTGATGATTGAAGACAATAACTTGGGAAGATCAGCAGCTGAGCGGTTTATGATGCTGGATCAGTTAGTTATCCATGAATCAAGAGAAGCATTCGATCCTCACTGGGACATGAGACTGGACATTGATGACATGAGCTATGAGGAGCTGCTGGCTTTGGAAGAACGCATAGGCCATGTGAACACTGGCCTCGCTGATGAGAAAATTTCTGGCTGTGTGATGGAGGTAGCCTGCTGCAGCAGTAGTCATTTGCAGGATGATCAGGACAATGAAAGATGTGTAATCTGCCTGGAGGAATACAAGCATGAGGACACACTTGGGAGGCTGAAATGCGGCCACGGGTTTCACTGCAATTGCATCAAGAAGTGGCTGCAGGTGAAGAACACCTGCCCAGTTTGCAAAGCTGCTGCCGCAGATGAAGGCAGCTGA
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| Protein seq | MAGHQYNNSQMSRMDHMDRLNNEPPPFGQKLFMHPRSDPANGAGSSGYVGNTMRSNDLPSSSYAGQAYGQQNRAPIHASYSGHAPAGSSSGSYAPYNTQHMPASSYPHGSEDNFIPSSHVDGRRVALKRRNPIIHPTDGFGVGNYYAGSSSNTQFSRPMPPNPIPPPESCVRMPSHLGSNHWNDHRYVNHEGSQRNVRGRHDHSTIHLEQSPAAACPSSSINVPPYHPNANGPFGSAPVQRDRAPLSVHPRILPPGPDGSSIAFRERPYYPAPQSTNISAPVPTLPISCDSAPFAHGGYAPRSAHRNNLRTYPPPAFASSSNPGAVSHEPAIPSYPPAAPSYPPATSAASSSVQPFHAEAAAHLRHPRHVSVGGSGSARSRRMRDSYHGFHHLMIEDNNLGRSAAERFMMLDQLVIHESREAFDPHWDMRLDIDDMSYEELLALEERIGHVNTGLADEKISGCVMEVACCSSSHLQDDQDNERCVICLEEYKHEDTLGRLKCGHGFHCNCIKKWLQVKNTCPVCKAAAADEGS |
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| Function | E3 ubiquitin-protein ligase MBR1 [UniProtKB/Swiss-Prot:Q9ZQF9] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| Os05g0163400 | Os05t0163400-01 | Chr05 | 3718329 | 3725414 | - | irgsp1_rep | ||
| CDS seq | ATGGCTGGACATCAGTATAATAATTCCCAGATGTCCCGGATGGATCATATGGACAGGCTAAACAATGAACCTCCACCTTTTGGCCAAAAGTTATTTATGCATCCTAGGAGTGATCCAGCTAACGGAGCTGGATCGTCTGGCTATGTGGGTAACACAATGAGATCGAATGATCTTCCGTCTTCAAGTTATGCTGGCCAAGCTTATGGTCAGCAGAATAGAGCCCCCATCCATGCTTCATATTCTGGTCATGCACCTGCTGGAAGCTCTAGTGGTAGCTATGCACCATACAATACTCAACATATGCCTGCTTCAAGCTATCCACACGGATCCGAGGATAATTTCATTCCAAGTTCCCATGTGGATGGCAGAAGGGTTGCATTGAAGAGAAGAAATCCCATCATTCATCCTACAGATGGATTCGGTGTTGGAAATTATTATGCTGGCAGTTCTTCCAATACTCAGTTCTCTCGGCCCATGCCTCCAAATCCTATTCCACCTCCTGAATCCTGTGTTCGAATGCCCTCACACTTGGGTTCGAACCACTGGAATGATCACCGCTATGTTAATCATGAAGGATCTCAGAGGAATGTGAGGGGAAGACATGATCATAGTACTATCCATTTGGAACAAAGTCCAGCTGCAGCTTGCCCGTCAAGCAGCATCAATGTGCCACCATACCATCCAAATGCAAATGGTCCTTTTGGAAGTGCACCAGTACAACGTGACAGAGCTCCTTTATCTGTGCATCCAAGAATTCTTCCTCCAGGGCCTGATGGTAGTAGCATAGCATTCAGAGAGAGGCCATACTATCCTGCTCCACAGAGCACCAACATAAGTGCACCTGTGCCAACGCTTCCTATTTCTTGTGACAGTGCACCATTTGCTCATGGTGGGTACGCCCCTAGATCAGCTCATCGTAACAACTTACGCACTTATCCTCCTCCAGCTTTTGCATCTTCTTCCAACCCTGGAGCAGTCTCCCATGAGCCAGCTATTCCTAGCTATCCACCTGCTGCCCCTAGCTATCCACCTGCAACCTCTGCAGCATCATCAAGTGTCCAGCCATTTCATGCTGAAGCTGCTGCACATTTGAGGCATCCAAGGCATGTATCTGTAGGGGGCAGTGGTAGTGCAAGGAGTAGAAGGATGAGGGATTCCTATCATGGTTTTCATCATTTGATGATTGAAGACAATAACTTGGGAAGATCAGCAGCTGAGCGGTTTATGATGCTGGATCAGTTAGTTATCCATGAATCAAGAGAAGCATTCGATCCTCACTGGGACATGAGACTGGACATTGATGACATGAGCTATGAGGAGCTGCTGGCTTTGGAAGAACGCATAGGCCATGTGAACACTGGCCTCGCTGATGAGAAAATTTCTGGCTGTGTGATGGAGGTAGCCTGCTGCAGCAGTAGTCATTTGCAGGATGATCAGGACAATGAAAGATGTGTAATCTGCCTGGAGGAATACAAGCATGAGGACACACTTGGGAGGCTGAAATGCGGCCACGGGTTTCACTGCAATTGCATCAAGAAGTGGCTGCAGGTGAAGAACACCTGCCCAGTTTGCAAAGCTGCTGCCGCAGATGAAGGCAGCTGA
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| Protein seq | MAGHQYNNSQMSRMDHMDRLNNEPPPFGQKLFMHPRSDPANGAGSSGYVGNTMRSNDLPSSSYAGQAYGQQNRAPIHASYSGHAPAGSSSGSYAPYNTQHMPASSYPHGSEDNFIPSSHVDGRRVALKRRNPIIHPTDGFGVGNYYAGSSSNTQFSRPMPPNPIPPPESCVRMPSHLGSNHWNDHRYVNHEGSQRNVRGRHDHSTIHLEQSPAAACPSSSINVPPYHPNANGPFGSAPVQRDRAPLSVHPRILPPGPDGSSIAFRERPYYPAPQSTNISAPVPTLPISCDSAPFAHGGYAPRSAHRNNLRTYPPPAFASSSNPGAVSHEPAIPSYPPAAPSYPPATSAASSSVQPFHAEAAAHLRHPRHVSVGGSGSARSRRMRDSYHGFHHLMIEDNNLGRSAAERFMMLDQLVIHESREAFDPHWDMRLDIDDMSYEELLALEERIGHVNTGLADEKISGCVMEVACCSSSHLQDDQDNERCVICLEEYKHEDTLGRLKCGHGFHCNCIKKWLQVKNTCPVCKAAAADEGS
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| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| Os05g0163400 | Os05t0163400-02 | Chr05 | 3722036 | 3725381 | - | irgsp1_rep | ||
| CDS seq | - |
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| Protein seq | - |
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| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| Os05g0163400 | Os05t0163400-03 | Chr05 | 3718368 | 3725296 | - | irgsp1_rep | ||
| CDS seq | ATGGCTGGACATCAGTATAATAATTCCCAGATGTCCCGGATGGATCATATGGACAGGCTAAACAATGAACCTCCACCTTTTGGCCAAAAGTTATTTATGCATCCTAGGAGTGATCCAGCTAACGGAGCTGGATCGTCTGGCTATGTGGGTAACACAATGAGATCGAATGATCTTCCGTCTTCAAGTTATGCTGGCCAAGCTTATGGTCAGCAGAATAGAGCCCCCATCCATGCTTCATATTCTGGTCATGCACCTGCTGGAAGCTCTAGTGGTAGCTATGCACCATACAATACTCAACATATGCCTGCTTCAAGCTATCCACACGGATCCGAGGATAATTTCATTCCAAGTTCCCATGTGGATGGCAGAAGGGTTGCATTGAAGAGAAGAAATCCCATCATTCATCCTACAGATGGATTCGGTGTTGGAAATTATTATGCTGGCAGTTCTTCCAATACTCAGTTCTCTCGGCCCATGCCTCCAAATCCTATTCCACCTCCTGAATCCTGTGTTCGAATGCCCTCACACTTGGGTTCGAACCACTGGAATGATCACCGCTATGTTAATCATGAAGGATCTCAGAGGAATGTGAGGGGAAGACATGATCATAGTACTATCCATTTGGAACAAAGTCCAGCTGCAGCTTGCCCGTCAAGCAGCATCAATGTGCCACCATACCATCCAAATGCAAATGGTCCTTTTGGAAGTGCACCAGTACAACGTGACAGAGCTCCTTTATCTGTGCATCCAAGAATTCTTCCTCCAGGGCCTGATGGTAGTAGCATAGCATTCAGAGAGAGGCCATACTATCCTGCTCCACAGAGCACCAACATAAGTGCACCTGTGCCAACGCTTCCTATTTCTTGTGACAGTGCACCATTTGCTCATGGTGGGTACGCCCCTAGATCAGCTCATCGTAACAACTTACGCACTTATCCTCCTCCAGCTTTTGCATCTTCTTCCAACCCTGGAGCAGTCTCCCATGAGCCAGCTATTCCTAGCTATCCACCTGCTGCCCCTAGCTATCCACCTGCAACCTCTGCAGCATCATCAAGTGTCCAGCCATTTCATGCTGAAGCTGCTGCACATTTGAGGCATCCAAGGCATGTATCTGTAGGGGGCAGTGGTAGTGCAAGGAGTAGAAGGATGAGGGATTCCTATCATGGTTTTCATCATTTGATGATTGAAGACAATAACTTGGGAAGATCAGCAGCTGAGCGGTTTATGATGCTGGATCAGTTAGTTATCCATGAATCAAGAGAAGCATTCGATCCTCACTGGGACATGAGACTGGACATTGATGACATGAGCTATGAGGAGCTGCTGGCTTTGGAAGAACGCATAGGCCATGTGAACACTGGCCTCGCTGATGAGAAAATTTCTGGCTGTGTGATGGAGGTAGCCTGCTGCAGCAGTAGTCATTTGCAGGATGATCAGGACAATGAAAGATGTGTAATCTGCCTGGAGGAATACAAGCATGAGGACACACTTGGGAGGCTGAAATGCGGCCACGGGTTTCACTGCAATTGCATCAAGAAGTGGCTGCAGGTGAAGAACACCTGCCCAGTTTGCAAAGCTGCTGCCGCAGATGAAGGCAGCTGA
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| Protein seq | MAGHQYNNSQMSRMDHMDRLNNEPPPFGQKLFMHPRSDPANGAGSSGYVGNTMRSNDLPSSSYAGQAYGQQNRAPIHASYSGHAPAGSSSGSYAPYNTQHMPASSYPHGSEDNFIPSSHVDGRRVALKRRNPIIHPTDGFGVGNYYAGSSSNTQFSRPMPPNPIPPPESCVRMPSHLGSNHWNDHRYVNHEGSQRNVRGRHDHSTIHLEQSPAAACPSSSINVPPYHPNANGPFGSAPVQRDRAPLSVHPRILPPGPDGSSIAFRERPYYPAPQSTNISAPVPTLPISCDSAPFAHGGYAPRSAHRNNLRTYPPPAFASSSNPGAVSHEPAIPSYPPAAPSYPPATSAASSSVQPFHAEAAAHLRHPRHVSVGGSGSARSRRMRDSYHGFHHLMIEDNNLGRSAAERFMMLDQLVIHESREAFDPHWDMRLDIDDMSYEELLALEERIGHVNTGLADEKISGCVMEVACCSSSHLQDDQDNERCVICLEEYKHEDTLGRLKCGHGFHCNCIKKWLQVKNTCPVCKAAAADEGS
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | None | None | None |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_05g0163400 | RBH | 2.791610 | 2.301666 | 7.370889 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os05g07070 | RBH | 1.926629 | 1.290542 | 1.735200 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os01g0159300 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_05g0004510 | RBH | 1.080325 | 29.464645 | 13.610007 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_05g0004560 | RBH | 0.235047 | 7.126880 | 3.673095 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_05g0004450 | RBH | 4.622820 | 42.300591 | 30.563728 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_05g0004540 | RBH | 0.472399 | 0.649344 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_05g0004610 | RBH | 17.842451 | 42.346336 | 37.717297 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_05G0053300 | RBH | 7.399947 | 28.046048 | 33.553686 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_05g0004390 | RBH | 1.079632 | 2.173228 | 4.278913 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_05G0008700 | SBH | 12.2062405 | 107.130928 | 11.8194 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_05g0004520 | RBH | 0.176267 | 0.206472 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_05g0004440 | RBH | 1.120515 | 11.575587 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_05g0004530 | RBH | 8.870317 | 19.415264 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_05g0004550 | RBH | 1.106766 | 1.616339 | 2.180567 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_05g0004600 | RBH | 0.505028 | 7.626354 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_05G004490 | RBH | 1.915676 | 6.113446 | 8.017401 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_05g0004710 | RBH | 1.983011 | 18.844833 | 8.718294 |
