Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsZS97_05G0008700 | OGI:05001440 | 16/16 | Zhenshan 97 | ZS97RS3 | HZAU | Chr05:529973-531133 | ||||||||
| Gene Symbol | OsRFP, - | ||||||||||
| DNA seq | ATGGCTTCTTCCTCCCCTTCCTCCTCCTCCTCCCCCCCTTCCGCCGCCGGTGCCTCCTCCTACTGGTGCTACAGCTGCGACCGCTTCGTGCGCGCCCCCGCCCCCCACGACGACTCCGCCGTCGCCTGCCCGGACTGCGGCGGCGGCTTCCTCGAGGAGATGAGCGCGCCCCCGCCGCGCGCCGCCTACCTCCGCCGCCCGCGCGCGCACCACGCCAACGACCTGCGCCTGCGCCGCACGCGCCGCGCCGCGGCGGCGGCGGCGGCCGGCGACCGCTCGCCGTTCAACCCCGTCATCGTGCTTCGCCGCTCCCCCGCCGCCGCCGGCGACGACGACTCCCTCGCCGCCGCCACCAGCTTCGAGCTCTTCTACGACGACGGCGCGGGCTCCGGCCTCCGCCCGCTCCCGGAGACCATGTCGGACTTCCTCATGGGCTCCGGCTTCGAGCGCCTCCTCGACCAGCTCACCCAGATCGAGGCCGGCGGCCTCGCCCGCGCCAGGGAGAACCCACCGGCCTCCAAGGCCTCCGTCGAGTCCATGCCCACCGTCACCATCGCCGCCTCCCACGTCGGCGCAGACTCCCACTGCGCCGTCTGCAAGGAGCCCTTCGAGCTCGGCGACGAGGCCAGGGAGATGCCCTGCAGCCACATCTACCACCAGGACTGCATCCTCCCATGGCTCGCGCTCCGCAACTCCTGCCCGGTCTGCCGCCACGAGATGCCCACCGACGCCGCCCGCCCGCGGCCCAGCAATGCCGGCACAGAGGAGGAGACGGTCGGCCTCACCATCTGGAGGCTGCCCGGAGGCGGCTTCGCCGTCGGTAGGTTCGCCGGAGGGAGGAGGCCCGAGGAGAGGGAGCTTCCAGTTGTGTACACCGAGATGGATGGAGGGTTCAACAACGGCGGCGCGCCGAGGAGGATCTCCTGGGGTTCGAGGCAGAGCCGATCGACGGAGAGGAGTGCCATTAGGCGCATCTTCCGCAATGTGTTCTCGTGCTTTGGTCGCAGCCATTCGTCGAATTCTCAGGCCTCGTCTTCGCATTCGAGGCCGGAGTTGAACGATGCGTCTGACCGGAGCGCCGTGTTCAGCCATGGCTCAAGAAGCCGGAGCACGAGCTGGAGGCTCGAAGATGGCCATGCCGACGCCATGGTGCAAAGATAG
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| CDS seq | ATGGCTTCTTCCTCCCCTTCCTCCTCCTCCTCCCCCCCTTCCGCCGCCGGTGCCTCCTCCTACTGGTGCTACAGCTGCGACCGCTTCGTGCGCGCCCCCGCCCCCCACGACGACTCCGCCGTCGCCTGCCCGGACTGCGGCGGCGGCTTCCTCGAGGAGATGAGCGCGCCCCCGCCGCGCGCCGCCTACCTCCGCCGCCCGCGCGCGCACCACGCCAACGACCTGCGCCTGCGCCGCACGCGCCGCGCCGCGGCGGCGGCGGCGGCCGGCGACCGCTCGCCGTTCAACCCCGTCATCGTGCTTCGCCGCTCCCCCGCCGCCGCCGGCGACGACGACTCCCTCGCCGCCGCCACCAGCTTCGAGCTCTTCTACGACGACGGCGCGGGCTCCGGCCTCCGCCCGCTCCCGGAGACCATGTCGGACTTCCTCATGGGCTCCGGCTTCGAGCGCCTCCTCGACCAGCTCACCCAGATCGAGGCCGGCGGCCTCGCCCGCGCCAGGGAGAACCCACCGGCCTCCAAGGCCTCCGTCGAGTCCATGCCCACCGTCACCATCGCCGCCTCCCACGTCGGCGCAGACTCCCACTGCGCCGTCTGCAAGGAGCCCTTCGAGCTCGGCGACGAGGCCAGGGAGATGCCCTGCAGCCACATCTACCACCAGGACTGCATCCTCCCATGGCTCGCGCTCCGCAACTCCTGCCCGGTCTGCCGCCACGAGATGCCCACCGACGCCGCCCGCCCGCGGCCCAGCAATGCCGGCACAGAGGAGGAGACGGTCGGCCTCACCATCTGGAGGCTGCCCGGAGGCGGCTTCGCCGTCGGTAGGTTCGCCGGAGGGAGGAGGCCCGAGGAGAGGGAGCTTCCAGTTGTGTACACCGAGATGGATGGAGGGTTCAACAACGGCGGCGCGCCGAGGAGGATCTCCTGGGGTTCGAGGCAGAGCCGATCGACGGAGAGGAGTGCCATTAGGCGCATCTTCCGCAATGTGTTCTCGTGCTTTGGTCGCAGCCATTCGTCGAATTCTCAGGCCTCGTCTTCGCATTCGAGGCCGGAGTTGAACGATGCGTCTGACCGGAGCGCCGTGTTCAGCCATGGCTCAAGAAGCCGGAGCACGAGCTGGAGGCTCGAAGATGGCCATGCCGACGCCATGGTGCAAAGATAG
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| Protein seq | MASSSPSSSSSPPSAAGASSYWCYSCDRFVRAPAPHDDSAVACPDCGGGFLEEMSAPPPRAAYLRRPRAHHANDLRLRRTRRAAAAAAAGDRSPFNPVIVLRRSPAAAGDDDSLAAATSFELFYDDGAGSGLRPLPETMSDFLMGSGFERLLDQLTQIEAGGLARARENPPASKASVESMPTVTIAASHVGADSHCAVCKEPFELGDEAREMPCSHIYHQDCILPWLALRNSCPVCRHEMPTDAARPRPSNAGTEEETVGLTIWRLPGGGFAVGRFAGGRRPEERELPVVYTEMDGGFNNGGAPRRISWGSRQSRSTERSAIRRIFRNVFSCFGRSHSSNSQASSSHSRPELNDASDRSAVFSHGSRSRSTSWRLEDGHADAMVQR |
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| Function | E3 ubiquitin-protein ligase RDUF2 [UniProtKB/Swiss-Prot:Q940T5] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsZS97_05G0008700 | OsZS97_05T0008700-mRNA-1 | Chr05 | 529973 | 531133 | + | makerRMon | ||
| CDS seq | ATGGCTTCTTCCTCCCCTTCCTCCTCCTCCTCCCCCCCTTCCGCCGCCGGTGCCTCCTCCTACTGGTGCTACAGCTGCGACCGCTTCGTGCGCGCCCCCGCCCCCCACGACGACTCCGCCGTCGCCTGCCCGGACTGCGGCGGCGGCTTCCTCGAGGAGATGAGCGCGCCCCCGCCGCGCGCCGCCTACCTCCGCCGCCCGCGCGCGCACCACGCCAACGACCTGCGCCTGCGCCGCACGCGCCGCGCCGCGGCGGCGGCGGCGGCCGGCGACCGCTCGCCGTTCAACCCCGTCATCGTGCTTCGCCGCTCCCCCGCCGCCGCCGGCGACGACGACTCCCTCGCCGCCGCCACCAGCTTCGAGCTCTTCTACGACGACGGCGCGGGCTCCGGCCTCCGCCCGCTCCCGGAGACCATGTCGGACTTCCTCATGGGCTCCGGCTTCGAGCGCCTCCTCGACCAGCTCACCCAGATCGAGGCCGGCGGCCTCGCCCGCGCCAGGGAGAACCCACCGGCCTCCAAGGCCTCCGTCGAGTCCATGCCCACCGTCACCATCGCCGCCTCCCACGTCGGCGCAGACTCCCACTGCGCCGTCTGCAAGGAGCCCTTCGAGCTCGGCGACGAGGCCAGGGAGATGCCCTGCAGCCACATCTACCACCAGGACTGCATCCTCCCATGGCTCGCGCTCCGCAACTCCTGCCCGGTCTGCCGCCACGAGATGCCCACCGACGCCGCCCGCCCGCGGCCCAGCAATGCCGGCACAGAGGAGGAGACGGTCGGCCTCACCATCTGGAGGCTGCCCGGAGGCGGCTTCGCCGTCGGTAGGTTCGCCGGAGGGAGGAGGCCCGAGGAGAGGGAGCTTCCAGTTGTGTACACCGAGATGGATGGAGGGTTCAACAACGGCGGCGCGCCGAGGAGGATCTCCTGGGGTTCGAGGCAGAGCCGATCGACGGAGAGGAGTGCCATTAGGCGCATCTTCCGCAATGTGTTCTCGTGCTTTGGTCGCAGCCATTCGTCGAATTCTCAGGCCTCGTCTTCGCATTCGAGGCCGGAGTTGAACGATGCGTCTGACCGGAGCGCCGTGTTCAGCCATGGCTCAAGAAGCCGGAGCACGAGCTGGAGGCTCGAAGATGGCCATGCCGACGCCATGGTGCAAAGATAG
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| Protein seq | MASSSPSSSSSPPSAAGASSYWCYSCDRFVRAPAPHDDSAVACPDCGGGFLEEMSAPPPRAAYLRRPRAHHANDLRLRRTRRAAAAAAAGDRSPFNPVIVLRRSPAAAGDDDSLAAATSFELFYDDGAGSGLRPLPETMSDFLMGSGFERLLDQLTQIEAGGLARARENPPASKASVESMPTVTIAASHVGADSHCAVCKEPFELGDEAREMPCSHIYHQDCILPWLALRNSCPVCRHEMPTDAARPRPSNAGTEEETVGLTIWRLPGGGFAVGRFAGGRRPEERELPVVYTEMDGGFNNGGAPRRISWGSRQSRSTERSAIRRIFRNVFSCFGRSHSSNSQASSSHSRPELNDASDRSAVFSHGSRSRSTSWRLEDGHADAMVQR
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 12.2062405 | 107.130928 | 11.8194 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_05g0110000 | RBH | 4.367433 | 3.609869 | 1.558968 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os05g01940 | RBH | 3.144936 | 3.420603 | 0.646181 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os05g0110000 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_05g0000730 | RBH | 0.623681 | 5.175808 | 4.226283 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_05g0000730 | RBH | 0.168643 | 0.707040 | 1.990614 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_05g0000760 | RBH | 1.564141 | 5.853437 | 9.203369 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_05g0000710 | RBH | 0.234120 | 0.140486 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_05g0000700 | RBH | 6.098577 | 9.945637 | 6.543171 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_05G0008500 | RBH | 9.648333 | 64.822422 | 7.0813305 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_05g0000720 | RBH | 0.695429 | 0.459392 | 0.326369 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_01G0706500 | RBH | 0.6525335 | 25.9378395 | 0.9062475 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_05g0000740 | RBH | 0.054575 | 0.164067 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_05g0000670 | RBH | 0.475716 | 6.951769 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_05g0000720 | RBH | 2.821105 | 8.704818 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_05g0000720 | RBH | 0.806977 | 0.964072 | 0.226530 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_05g0000730 | RBH | 0.569072 | 6.330452 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_05G000650 | RBH | 0.215033 | 2.923826 | 1.653156 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_05g0000750 | RBH | 2.641402 | 7.667858 | 2.018070 |
