Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| Os04g0688500 | OGI:04103120 | 5/16 | Nipponbare | IRGSP 1.0 | RAP-db | Chr04:35215245-35216755 | ||||||||
| Gene Symbol | prx62, OsPRX62 | ||||||||||
| DNA seq | CGGCAAGCTTGTTTCTTAATATAAAAAGCTTTCAAATGTAATTACTACTAGTATATTATAGTACAAACGTAAAATATATATCGCGCGAACATATACATACATACAGTTGGAATAAAATATACTCAAGATATATATGATCACTCTTGGAATGAACCCAAATTAAAAGTAGGGACGGTCGGACGGACGTATGGAGTATCAAGCAGACGCAGAGGCAGCGAAACCGGGGTCTTGGTCGGTGGCGGCGGCGACGACGAGGTCGAGGCGTGGTCCGTTGGAGTTGGAAAGGAAGCAGCTGCGGCGGATCTCGCCGACGTTCCCGCCGGGCCTGGGTACCTTGCTGAGCTTGACCATGGACTTGGCAAACTGGTCGAAGAAGGCGGCCTTGTCCTGCGCGAACTGCCTGACGATGGACGCCGTGGTCTGGTTCTTCATGAGCGCCATGTCGGAAGTGAAGACACCCTGGCCGGTGGTGAGCGCGATGTAGTAGGCGTTGTCGAAGGCGTCGGGCGTTATCACGTCAAGCTCCTGCAGCCGGTTGGGGTCCTTGGTGCAGTTCAACTTCAGCTTCTTGGAGAAGGTGTCGTCCTGGCGCCCCGCGCGGTCACGGAAGAAGTCGCAGCGTGCTCTCCCGACGGTGTGGCCGCCGGAGAGCGCCACCAGGTCGGCAGGATCTCCCAGGCCCCTGGTCGCGAAAAGGTCGATGAGAGCCTGGACTCTGGAGGTGCTCGGGCCCGGGAGATCTCCGACGAGATCCACCGATGCCGGAGCGAGGCTGTCTTGCTGGCCGAGTGGCACGGCGTAAGAGGGGCCGCCGGAGACGACGACGGCGTCGCGGGTGGCGAGGGCGGAGATGTCGGCGCAGGAGACAGTGGGACCGCATTCGGCGTGCACCTTGGCGCGGATGTCCTCCACCAGCTGCAGCGCCCGCGGCTGCAGCGTCTCGTTGGGTCCCTGGGGAAACTGCTCCGTGTTGGGGTTGGTGGCATTCAGATATACCGACGCGTCGCACCCCTGTACGTATACATGTCCATTTAGTTACGTACTCCGATCCTATACCTTATATACGTACATACATACAACACAGTACTGTATTAATTAGTACAGTAATAAGGGCGCACGTAGAGTAGCTAGAGGTGACCTGTGGGAAGCAGTCGTGGAAGAAGATGCGGAGGAGACCGGCGGCGAGGGCGATCTCCCGCTGGAGCGCCGCCTGCACGGCGGAGCGCACGATGGTCTCCAGCTGCGGGCACGACGCAGCGTGGAAGTCCACAGACATGTCACGGCGAGATGCAGCTGCTGGTGGTGGCGAGAGGAGGAGGACGACGGTGGAGACAAGCTGCAGGACGGCCACTGCGCGGCCGCTTCTGCTCACTGCACCCATCTTAATTAATTTCTACCTTGTACAATGTTAATTACTCCACTAGCTAGCTCCTCCTAGCTAGCTGCTAATCGATAATAATGCAGTAATATAATTGATCGAATTATTACTAACTGCGCTTGTGCTTGTGCCT
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| CDS seq | ATGGGTGCAGTGAGCAGAAGCGGCCGCGCAGTGGCCGTCCTGCAGCTTGTCTCCACCGTCGTCCTCCTCCTCTCGCCACCACCAGCAGCTGCATCTCGCCGTGACATGTCTGTGGACTTCCACGCTGCGTCGTGCCCGCAGCTGGAGACCATCGTGCGCTCCGCCGTGCAGGCGGCGCTCCAGCGGGAGATCGCCCTCGCCGCCGGTCTCCTCCGCATCTTCTTCCACGACTGCTTCCCACAGGGGTGCGACGCGTCGGTATATCTGAATGCCACCAACCCCAACACGGAGCAGTTTCCCCAGGGACCCAACGAGACGCTGCAGCCGCGGGCGCTGCAGCTGGTGGAGGACATCCGCGCCAAGGTGCACGCCGAATGCGGTCCCACTGTCTCCTGCGCCGACATCTCCGCCCTCGCCACCCGCGACGCCGTCGTCGTCTCCGGCGGCCCCTCTTACGCCGTGCCACTCGGCCAGCAAGACAGCCTCGCTCCGGCATCGGTGGATCTCGTCGGAGATCTCCCGGGCCCGAGCACCTCCAGAGTCCAGGCTCTCATCGACCTTTTCGCGACCAGGGGCCTGGGAGATCCTGCCGACCTGGTGGCGCTCTCCGGCGGCCACACCGTCGGGAGAGCACGCTGCGACTTCTTCCGTGACCGCGCGGGGCGCCAGGACGACACCTTCTCCAAGAAGCTGAAGTTGAACTGCACCAAGGACCCCAACCGGCTGCAGGAGCTTGACGTGATAACGCCCGACGCCTTCGACAACGCCTACTACATCGCGCTCACCACCGGCCAGGGTGTCTTCACTTCCGACATGGCGCTCATGAAGAACCAGACCACGGCGTCCATCGTCAGGCAGTTCGCGCAGGACAAGGCCGCCTTCTTCGACCAGTTTGCCAAGTCCATGGTCAAGCTCAGCAAGGTACCCAGGCCCGGCGGGAACGTCGGCGAGATCCGCCGCAGCTGCTTCCTTTCCAACTCCAACGGACCACGCCTCGACCTCGTCGTCGCCGCCGCCACCGACCAAGACCCCGGTTTCGCTGCCTCTGCGTCTGCTTGA
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| Protein seq | MGAVSRSGRAVAVLQLVSTVVLLLSPPPAAASRRDMSVDFHAASCPQLETIVRSAVQAALQREIALAAGLLRIFFHDCFPQGCDASVYLNATNPNTEQFPQGPNETLQPRALQLVEDIRAKVHAECGPTVSCADISALATRDAVVVSGGPSYAVPLGQQDSLAPASVDLVGDLPGPSTSRVQALIDLFATRGLGDPADLVALSGGHTVGRARCDFFRDRAGRQDDTFSKKLKLNCTKDPNRLQELDVITPDAFDNAYYIALTTGQGVFTSDMALMKNQTTASIVRQFAQDKAAFFDQFAKSMVKLSKVPRPGGNVGEIRRSCFLSNSNGPRLDLVVAAATDQDPGFAASASA |
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| Function | Cationic peroxidase SPC4 [UniProtKB/Swiss-Prot:P84516] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| Os04g0688500 | Os04t0688500-01 | Chr04 | 35215245 | 35216755 | - | irgsp1_rep | ||
| CDS seq | ATGGGTGCAGTGAGCAGAAGCGGCCGCGCAGTGGCCGTCCTGCAGCTTGTCTCCACCGTCGTCCTCCTCCTCTCGCCACCACCAGCAGCTGCATCTCGCCGTGACATGTCTGTGGACTTCCACGCTGCGTCGTGCCCGCAGCTGGAGACCATCGTGCGCTCCGCCGTGCAGGCGGCGCTCCAGCGGGAGATCGCCCTCGCCGCCGGTCTCCTCCGCATCTTCTTCCACGACTGCTTCCCACAGGGGTGCGACGCGTCGGTATATCTGAATGCCACCAACCCCAACACGGAGCAGTTTCCCCAGGGACCCAACGAGACGCTGCAGCCGCGGGCGCTGCAGCTGGTGGAGGACATCCGCGCCAAGGTGCACGCCGAATGCGGTCCCACTGTCTCCTGCGCCGACATCTCCGCCCTCGCCACCCGCGACGCCGTCGTCGTCTCCGGCGGCCCCTCTTACGCCGTGCCACTCGGCCAGCAAGACAGCCTCGCTCCGGCATCGGTGGATCTCGTCGGAGATCTCCCGGGCCCGAGCACCTCCAGAGTCCAGGCTCTCATCGACCTTTTCGCGACCAGGGGCCTGGGAGATCCTGCCGACCTGGTGGCGCTCTCCGGCGGCCACACCGTCGGGAGAGCACGCTGCGACTTCTTCCGTGACCGCGCGGGGCGCCAGGACGACACCTTCTCCAAGAAGCTGAAGTTGAACTGCACCAAGGACCCCAACCGGCTGCAGGAGCTTGACGTGATAACGCCCGACGCCTTCGACAACGCCTACTACATCGCGCTCACCACCGGCCAGGGTGTCTTCACTTCCGACATGGCGCTCATGAAGAACCAGACCACGGCGTCCATCGTCAGGCAGTTCGCGCAGGACAAGGCCGCCTTCTTCGACCAGTTTGCCAAGTCCATGGTCAAGCTCAGCAAGGTACCCAGGCCCGGCGGGAACGTCGGCGAGATCCGCCGCAGCTGCTTCCTTTCCAACTCCAACGGACCACGCCTCGACCTCGTCGTCGCCGCCGCCACCGACCAAGACCCCGGTTTCGCTGCCTCTGCGTCTGCTTGA
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| Protein seq | MGAVSRSGRAVAVLQLVSTVVLLLSPPPAAASRRDMSVDFHAASCPQLETIVRSAVQAALQREIALAAGLLRIFFHDCFPQGCDASVYLNATNPNTEQFPQGPNETLQPRALQLVEDIRAKVHAECGPTVSCADISALATRDAVVVSGGPSYAVPLGQQDSLAPASVDLVGDLPGPSTSRVQALIDLFATRGLGDPADLVALSGGHTVGRARCDFFRDRAGRQDDTFSKKLKLNCTKDPNRLQELDVITPDAFDNAYYIALTTGQGVFTSDMALMKNQTTASIVRQFAQDKAAFFDQFAKSMVKLSKVPRPGGNVGEIRRSCFLSNSNGPRLDLVVAAATDQDPGFAASASA
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | None | None | None |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_04g0688500 | RBH | 0.0 | 0.0 | 0.0 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os04g59200 | RBH | 0.0 | 0.0 | 0.0 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os04g0689000 | SBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_04g0031890 | SBH | 0.248791 | 0.0 | 1.427324 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_04g0032670 | RBH | 0.0 | 0.806758 | 4.572251 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_04g0032240 | RBH | 0.838486 | 7.497466 | 6.097501 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_04g0032090 | SBH | 0.000000 | 0.000000 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_04g0032380 | SBH | 0.0 | 0.0 | 3.363317 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_04G0556600 | SBH | 3.8202765 | 102.132744 | 96.613762 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_04g0030980 | SBH | 0.069409 | 7.706303 | 0.188825 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_04G0562600 | SBH | 3.723458 | 20.444683 | 8.383476 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_04g0031460 | SBH | 0.0 | 0.0 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_04g0031260 | SBH | 0.685717 | 0.000000 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_04g0031390 | SBH | 1.691352 | 16.330233 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_04g0031960 | SBH | 0.317584 | 0.000000 | 0.913584 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_04g0031940 | SBH | 0.400996 | 23.364229 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_04G031440 | SBH | 0.298194 | 1.019661 | 1.026314 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_04g0031180 | SBH | 1.722616 | 16.841997 | 3.523848 |
