Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| Os04g0602600 | OGI:04090160 | 16/16 | Nipponbare | IRGSP 1.0 | RAP-db | Chr04:30410105-30413160 | ||||||||
| Gene Symbol | MPR25 | ||||||||||
| DNA seq | ATCGAATCGTCTGTGGCGCCCGCGAAGCAACGGAAGAGATGAGGAGATGACTCGGATGAGCGGAAGCTGCAGGGAGCGAGTCGTCGTCGTCGTCGTCACCGCGAGGCGCCGCGCCAACCTCTCATGTCCTCTCCTCGCTGCGCCGTCTCGCTCCCACCCACCGCCGCGGCGACCACCGCCACCAATGGCGGAGGCGGCGGGAGGAGGAACGCGCAGCCGGCAGCGGCGACGGCGGCGTCGCAGGTGAAGAAGCTGTGCAAGCAGGGGCGGCTGGACCACGCGCGGCGGCTGCTCCTCGAGGCGCTTCCCCGGCCGCCACCGACGCTGCTCTGCAACGCGCTCCTCATCGCCTACGCCGCCCGCGCGCTCCCGGAGGAGGCGCTCCGCCTCTACGCTCTCCTCAACCACGCCGCGCGCCCGCCGGTCCGCTCCGACCACTACACCTACTCCGCCGCGCTCACCGCCTGCGCACGCTCCCGCCGCCTCCGCCTCGGGAGGTCCGTCCACGCGCACATGCTCCGGCGCGCCCGCTCCCTCCCGGACACCGCCGTCCTCCGCAACTCCCTCCTCAACCTCTACGCCTCCAGCGTGCGGTACCGGGAGGCACGCGTCGACGTCGTCCGGAGGCTGTTCGACGCAATGCCTAAGAGGAACGTGGTTTCTTGGAACACTCTGTTCGGCTGGTACGTCAAGACCGGGCGTCCCCAGGAAGCCCTGGAGCTGTTTGTGCGCATGCTAGAAGATGGTTTCAGGCCCACGCCGGTCAGCTTCGTGAATATATTTCCGGCTGCTGTGGCTGACGATCCAAGCTGGCCATTCCAGCTCTACGGATTACTTGTGAAGTATGGGGTAGAGTATATCAACGATCTGTTTGTTGTGAGCTCAGCAATCGACATGTTCTCCGAATTTGGGGATGTGCAATCAGCTCGGAGGGTGTTTGATCGTGCTGCCAAGAAGAACACCGAGGTTTGGAACACCATGATCACTGGGTATGTACAGAATGGCCAGTTTTCTGAAGCCATTGATCTCTTCAGCAAAATCTTGGGATCCCGAGAGGTTCCATTGGATGTTGTGACCTTCTTATCGGCCCTCACAGCTGCCTCACAGTCACAGGATGTTAGCTTGGGTCAGCAGCTGCATGGCTATTTGATTAAAGGAATGCATAGGACATTGCCTGTAATACTCGGTAATGCACTTGTTGTGATGTACTCAAGATGTGGCAATGTCCAAACTGCCTTTGATCTCTTCGACCGGTTGCCAGAGAAGGACATTGTTACTTGGAATACCATGGTGACTGCTTTTATACAGAACGATTTTGACTTGGAAGGCTTGCTGCTCGTCTATGAGATGCAGAAATCAGGTTTTGCTGCTGATTCTGTGACATTGACTGCAGTTCTGTCAGCATCATCAAATACTGGAGACCTTCAGATCGGTAAACAAGCACATGGTTATCTTATCAGGCATGGTATCGAGGGTGAGGGCTTGGAGAGCTACCTAATAGACATGTATGCAAAATCTGGCCGTGTAGAAATGGCTCAGAGAGTGTTTGATAGCTTTAAAAATGCCAAGAGGGATGAAGTCACTTGGAATGCCATGATAGCGGGATACACACAGAGTGGACAGCCTGAAAAGGCAATCTTAGTATTCCGGGCAATGCTTGAGGCAGGTCTTGAACCTACTTCGGTGACACTTGCTTCGGTGCTACCTGCATGTGATCCTGTTGGAGGGGGCGTTTATTCTGGGAAGCAAATCCACTGTTTTGCTGTGCGCCGTTGTTTGGATACCAATGTCTTCGTAGGTACAGCTCTTATTGACATGTACTCTAAGTGTGGTGAGATCACTACAGCAGAAAATGTCTTTGGTGGCATGACGGGGAAGAGCACTGTCACCTATACGACAATGATATCTGGTCTTGGTCAGCATGGTTTCGGCAAAAAAGCGCTTGCTCTTTTCAACTCCATGCAAGAAAAGGGGTTGAAGCCTGATGCAGTGACCTTCTTGTCTGCGATTTCAGCATGTAATTACTCTGGACTCGTCGACGAAGGACTAGCTTTGTACAGGTCGATGGACTCATTTGGAATTTCGGCTACTCCTCAGCACCACTGCTGTGTTGCAGACTTGTTAGCTAAAGCTGGAAGGGTGGAGGAAGCATACGAGTTTATAGAGGGGCTGGGGGAGGAGGGCAACTTTGTTGCCATCTGGGGATCGCTGCTTGCATCCTGCAAAGCTCAGGGCAAGCAAGAGTTGGCAAAGTTGGTGACCAAGAAGCTGCTTGACATCGAGAAGCAGTACGGTCATGCAGGCTACAGCGTTTTGTTGTCACAGGTCCTTGCTGCTGAAAGTAACTGGAATAGTGCTGATAGTCTAAGAAAGGAGATGAGGGCAAGGGGATTGAAGAAAGAAGCAGGTTCTAGTTGGATTAAAGTCCAGAACGCAGCATTGGAACACAAGTTTATCGAAAAAGACCAAAATTATGTCGAAAATGAGCACATGTTCTCGATTCTGGATGGTGATGCCGACAGTACGGATAGACTTTAACATGTTTCAATACCTTTTGGCACGCAAGATTGCAGATATGAGATTCCTAATCCTATTGTGGTGATTACCTCACGCTGACAGACTAGGCTCCTGTTTTACCTGCAGTTTAACATGATTTATCTTCATTCAGAAATCAGAATTGATGCTCCTCATAGTAATACTTGACTGGATGGAAACTTGGAAAGACACCTAGCCCACAAACCTCATGCGGCGGCCACACGGTGAACTTGTGCTGCGAGACATCAATCTATGGATGAGGTTGATACCAATGATGTGCCAGATGAAGAGCAAGCTGCAATCTTGCAGGTGGCCAGGTTGTAACTTGTATTCAGTAGTACGCATATCTTGACAAGCACAGCGCCCTCCTTAGGGATTCTGGGTGAATTGTACAGCTACATTTGCTTATAATCGTCTAGAAATAGGTGAGTACTGTCATAGAACGAGCAACGTGATTAGGCAACGGGATTTTTTTTGGTTGTGAACGTACATACAATATCTTAAATGAAGATTATTCTCAC
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| CDS seq | ATGTCCTCTCCTCGCTGCGCCGTCTCGCTCCCACCCACCGCCGCGGCGACCACCGCCACCAATGGCGGAGGCGGCGGGAGGAGGAACGCGCAGCCGGCAGCGGCGACGGCGGCGTCGCAGGTGAAGAAGCTGTGCAAGCAGGGGCGGCTGGACCACGCGCGGCGGCTGCTCCTCGAGGCGCTTCCCCGGCCGCCACCGACGCTGCTCTGCAACGCGCTCCTCATCGCCTACGCCGCCCGCGCGCTCCCGGAGGAGGCGCTCCGCCTCTACGCTCTCCTCAACCACGCCGCGCGCCCGCCGGTCCGCTCCGACCACTACACCTACTCCGCCGCGCTCACCGCCTGCGCACGCTCCCGCCGCCTCCGCCTCGGGAGGTCCGTCCACGCGCACATGCTCCGGCGCGCCCGCTCCCTCCCGGACACCGCCGTCCTCCGCAACTCCCTCCTCAACCTCTACGCCTCCAGCGTGCGGTACCGGGAGGCACGCGTCGACGTCGTCCGGAGGCTGTTCGACGCAATGCCTAAGAGGAACGTGGTTTCTTGGAACACTCTGTTCGGCTGGTACGTCAAGACCGGGCGTCCCCAGGAAGCCCTGGAGCTGTTTGTGCGCATGCTAGAAGATGGTTTCAGGCCCACGCCGGTCAGCTTCGTGAATATATTTCCGGCTGCTGTGGCTGACGATCCAAGCTGGCCATTCCAGCTCTACGGATTACTTGTGAAGTATGGGGTAGAGTATATCAACGATCTGTTTGTTGTGAGCTCAGCAATCGACATGTTCTCCGAATTTGGGGATGTGCAATCAGCTCGGAGGGTGTTTGATCGTGCTGCCAAGAAGAACACCGAGGTTTGGAACACCATGATCACTGGGTATGTACAGAATGGCCAGTTTTCTGAAGCCATTGATCTCTTCAGCAAAATCTTGGGATCCCGAGAGGTTCCATTGGATGTTGTGACCTTCTTATCGGCCCTCACAGCTGCCTCACAGTCACAGGATGTTAGCTTGGGTCAGCAGCTGCATGGCTATTTGATTAAAGGAATGCATAGGACATTGCCTGTAATACTCGGTAATGCACTTGTTGTGATGTACTCAAGATGTGGCAATGTCCAAACTGCCTTTGATCTCTTCGACCGGTTGCCAGAGAAGGACATTGTTACTTGGAATACCATGGTGACTGCTTTTATACAGAACGATTTTGACTTGGAAGGCTTGCTGCTCGTCTATGAGATGCAGAAATCAGGTTTTGCTGCTGATTCTGTGACATTGACTGCAGTTCTGTCAGCATCATCAAATACTGGAGACCTTCAGATCGGTAAACAAGCACATGGTTATCTTATCAGGCATGGTATCGAGGGTGAGGGCTTGGAGAGCTACCTAATAGACATGTATGCAAAATCTGGCCGTGTAGAAATGGCTCAGAGAGTGTTTGATAGCTTTAAAAATGCCAAGAGGGATGAAGTCACTTGGAATGCCATGATAGCGGGATACACACAGAGTGGACAGCCTGAAAAGGCAATCTTAGTATTCCGGGCAATGCTTGAGGCAGGTCTTGAACCTACTTCGGTGACACTTGCTTCGGTGCTACCTGCATGTGATCCTGTTGGAGGGGGCGTTTATTCTGGGAAGCAAATCCACTGTTTTGCTGTGCGCCGTTGTTTGGATACCAATGTCTTCGTAGGTACAGCTCTTATTGACATGTACTCTAAGTGTGGTGAGATCACTACAGCAGAAAATGTCTTTGGTGGCATGACGGGGAAGAGCACTGTCACCTATACGACAATGATATCTGGTCTTGGTCAGCATGGTTTCGGCAAAAAAGCGCTTGCTCTTTTCAACTCCATGCAAGAAAAGGGGTTGAAGCCTGATGCAGTGACCTTCTTGTCTGCGATTTCAGCATGTAATTACTCTGGACTCGTCGACGAAGGACTAGCTTTGTACAGGTCGATGGACTCATTTGGAATTTCGGCTACTCCTCAGCACCACTGCTGTGTTGCAGACTTGTTAGCTAAAGCTGGAAGGGTGGAGGAAGCATACGAGTTTATAGAGGGGCTGGGGGAGGAGGGCAACTTTGTTGCCATCTGGGGATCGCTGCTTGCATCCTGCAAAGCTCAGGGCAAGCAAGAGTTGGCAAAGTTGGTGACCAAGAAGCTGCTTGACATCGAGAAGCAGTACGGTCATGCAGGCTACAGCGTTTTGTTGTCACAGGTCCTTGCTGCTGAAAGTAACTGGAATAGTGCTGATAGTCTAAGAAAGGAGATGAGGGCAAGGGGATTGAAGAAAGAAGCAGGTTCTAGTTGGATTAAAGTCCAGAACGCAGCATTGGAACACAAGTTTATCGAAAAAGACCAAAATTATGTCGAAAATGAGCACATGTTCTCGATTCTGGATGGTGATGCCGACAGTACGGATAGACTTTAA
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| Protein seq | MSSPRCAVSLPPTAAATTATNGGGGGRRNAQPAAATAASQVKKLCKQGRLDHARRLLLEALPRPPPTLLCNALLIAYAARALPEEALRLYALLNHAARPPVRSDHYTYSAALTACARSRRLRLGRSVHAHMLRRARSLPDTAVLRNSLLNLYASSVRYREARVDVVRRLFDAMPKRNVVSWNTLFGWYVKTGRPQEALELFVRMLEDGFRPTPVSFVNIFPAAVADDPSWPFQLYGLLVKYGVEYINDLFVVSSAIDMFSEFGDVQSARRVFDRAAKKNTEVWNTMITGYVQNGQFSEAIDLFSKILGSREVPLDVVTFLSALTAASQSQDVSLGQQLHGYLIKGMHRTLPVILGNALVVMYSRCGNVQTAFDLFDRLPEKDIVTWNTMVTAFIQNDFDLEGLLLVYEMQKSGFAADSVTLTAVLSASSNTGDLQIGKQAHGYLIRHGIEGEGLESYLIDMYAKSGRVEMAQRVFDSFKNAKRDEVTWNAMIAGYTQSGQPEKAILVFRAMLEAGLEPTSVTLASVLPACDPVGGGVYSGKQIHCFAVRRCLDTNVFVGTALIDMYSKCGEITTAENVFGGMTGKSTVTYTTMISGLGQHGFGKKALALFNSMQEKGLKPDAVTFLSAISACNYSGLVDEGLALYRSMDSFGISATPQHHCCVADLLAKAGRVEEAYEFIEGLGEEGNFVAIWGSLLASCKAQGKQELAKLVTKKLLDIEKQYGHAGYSVLLSQVLAAESNWNSADSLRKEMRARGLKKEAGSSWIKVQNAALEHKFIEKDQNYVENEHMFSILDGDADSTDRL |
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| Function | Pentatricopeptide repeat-containing protein At3g22150, chloroplastic [UniProtKB/Swiss-Prot:Q9LIE7] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| Os04g0602600 | Os04t0602600-01 | Chr04 | 30410105 | 30413160 | + | irgsp1_rep | ||
| CDS seq | ATGTCCTCTCCTCGCTGCGCCGTCTCGCTCCCACCCACCGCCGCGGCGACCACCGCCACCAATGGCGGAGGCGGCGGGAGGAGGAACGCGCAGCCGGCAGCGGCGACGGCGGCGTCGCAGGTGAAGAAGCTGTGCAAGCAGGGGCGGCTGGACCACGCGCGGCGGCTGCTCCTCGAGGCGCTTCCCCGGCCGCCACCGACGCTGCTCTGCAACGCGCTCCTCATCGCCTACGCCGCCCGCGCGCTCCCGGAGGAGGCGCTCCGCCTCTACGCTCTCCTCAACCACGCCGCGCGCCCGCCGGTCCGCTCCGACCACTACACCTACTCCGCCGCGCTCACCGCCTGCGCACGCTCCCGCCGCCTCCGCCTCGGGAGGTCCGTCCACGCGCACATGCTCCGGCGCGCCCGCTCCCTCCCGGACACCGCCGTCCTCCGCAACTCCCTCCTCAACCTCTACGCCTCCAGCGTGCGGTACCGGGAGGCACGCGTCGACGTCGTCCGGAGGCTGTTCGACGCAATGCCTAAGAGGAACGTGGTTTCTTGGAACACTCTGTTCGGCTGGTACGTCAAGACCGGGCGTCCCCAGGAAGCCCTGGAGCTGTTTGTGCGCATGCTAGAAGATGGTTTCAGGCCCACGCCGGTCAGCTTCGTGAATATATTTCCGGCTGCTGTGGCTGACGATCCAAGCTGGCCATTCCAGCTCTACGGATTACTTGTGAAGTATGGGGTAGAGTATATCAACGATCTGTTTGTTGTGAGCTCAGCAATCGACATGTTCTCCGAATTTGGGGATGTGCAATCAGCTCGGAGGGTGTTTGATCGTGCTGCCAAGAAGAACACCGAGGTTTGGAACACCATGATCACTGGGTATGTACAGAATGGCCAGTTTTCTGAAGCCATTGATCTCTTCAGCAAAATCTTGGGATCCCGAGAGGTTCCATTGGATGTTGTGACCTTCTTATCGGCCCTCACAGCTGCCTCACAGTCACAGGATGTTAGCTTGGGTCAGCAGCTGCATGGCTATTTGATTAAAGGAATGCATAGGACATTGCCTGTAATACTCGGTAATGCACTTGTTGTGATGTACTCAAGATGTGGCAATGTCCAAACTGCCTTTGATCTCTTCGACCGGTTGCCAGAGAAGGACATTGTTACTTGGAATACCATGGTGACTGCTTTTATACAGAACGATTTTGACTTGGAAGGCTTGCTGCTCGTCTATGAGATGCAGAAATCAGGTTTTGCTGCTGATTCTGTGACATTGACTGCAGTTCTGTCAGCATCATCAAATACTGGAGACCTTCAGATCGGTAAACAAGCACATGGTTATCTTATCAGGCATGGTATCGAGGGTGAGGGCTTGGAGAGCTACCTAATAGACATGTATGCAAAATCTGGCCGTGTAGAAATGGCTCAGAGAGTGTTTGATAGCTTTAAAAATGCCAAGAGGGATGAAGTCACTTGGAATGCCATGATAGCGGGATACACACAGAGTGGACAGCCTGAAAAGGCAATCTTAGTATTCCGGGCAATGCTTGAGGCAGGTCTTGAACCTACTTCGGTGACACTTGCTTCGGTGCTACCTGCATGTGATCCTGTTGGAGGGGGCGTTTATTCTGGGAAGCAAATCCACTGTTTTGCTGTGCGCCGTTGTTTGGATACCAATGTCTTCGTAGGTACAGCTCTTATTGACATGTACTCTAAGTGTGGTGAGATCACTACAGCAGAAAATGTCTTTGGTGGCATGACGGGGAAGAGCACTGTCACCTATACGACAATGATATCTGGTCTTGGTCAGCATGGTTTCGGCAAAAAAGCGCTTGCTCTTTTCAACTCCATGCAAGAAAAGGGGTTGAAGCCTGATGCAGTGACCTTCTTGTCTGCGATTTCAGCATGTAATTACTCTGGACTCGTCGACGAAGGACTAGCTTTGTACAGGTCGATGGACTCATTTGGAATTTCGGCTACTCCTCAGCACCACTGCTGTGTTGCAGACTTGTTAGCTAAAGCTGGAAGGGTGGAGGAAGCATACGAGTTTATAGAGGGGCTGGGGGAGGAGGGCAACTTTGTTGCCATCTGGGGATCGCTGCTTGCATCCTGCAAAGCTCAGGGCAAGCAAGAGTTGGCAAAGTTGGTGACCAAGAAGCTGCTTGACATCGAGAAGCAGTACGGTCATGCAGGCTACAGCGTTTTGTTGTCACAGGTCCTTGCTGCTGAAAGTAACTGGAATAGTGCTGATAGTCTAAGAAAGGAGATGAGGGCAAGGGGATTGAAGAAAGAAGCAGGTTCTAGTTGGATTAAAGTCCAGAACGCAGCATTGGAACACAAGTTTATCGAAAAAGACCAAAATTATGTCGAAAATGAGCACATGTTCTCGATTCTGGATGGTGATGCCGACAGTACGGATAGACTTTAA
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| Protein seq | MSSPRCAVSLPPTAAATTATNGGGGGRRNAQPAAATAASQVKKLCKQGRLDHARRLLLEALPRPPPTLLCNALLIAYAARALPEEALRLYALLNHAARPPVRSDHYTYSAALTACARSRRLRLGRSVHAHMLRRARSLPDTAVLRNSLLNLYASSVRYREARVDVVRRLFDAMPKRNVVSWNTLFGWYVKTGRPQEALELFVRMLEDGFRPTPVSFVNIFPAAVADDPSWPFQLYGLLVKYGVEYINDLFVVSSAIDMFSEFGDVQSARRVFDRAAKKNTEVWNTMITGYVQNGQFSEAIDLFSKILGSREVPLDVVTFLSALTAASQSQDVSLGQQLHGYLIKGMHRTLPVILGNALVVMYSRCGNVQTAFDLFDRLPEKDIVTWNTMVTAFIQNDFDLEGLLLVYEMQKSGFAADSVTLTAVLSASSNTGDLQIGKQAHGYLIRHGIEGEGLESYLIDMYAKSGRVEMAQRVFDSFKNAKRDEVTWNAMIAGYTQSGQPEKAILVFRAMLEAGLEPTSVTLASVLPACDPVGGGVYSGKQIHCFAVRRCLDTNVFVGTALIDMYSKCGEITTAENVFGGMTGKSTVTYTTMISGLGQHGFGKKALALFNSMQEKGLKPDAVTFLSAISACNYSGLVDEGLALYRSMDSFGISATPQHHCCVADLLAKAGRVEEAYEFIEGLGEEGNFVAIWGSLLASCKAQGKQELAKLVTKKLLDIEKQYGHAGYSVLLSQVLAAESNWNSADSLRKEMRARGLKKEAGSSWIKVQNAALEHKFIEKDQNYVENEHMFSILDGDADSTDRL
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | None | None | None |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_04g0602600 | RBH | 1.931116 | 1.726752 | 0.194615 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os04g51350 | RBH | 1.286970 | 1.176898 | 0.049370 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os02g0670700 | SBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_04g0025530 | RBH | 0.181159 | 0.0 | 1.207548 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_04g0026300 | RBH | 0.050617 | 0.0 | 0.125289 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_04g0026050 | RBH | 0.494512 | 0.0 | 1.826116 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_04g0025750 | RBH | 0.041961 | 0.046329 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_04g0026010 | RBH | 1.236029 | 0.0 | 2.243883 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_04G0479900 | RBH | 3.730022 | 1.920511 | 0.6179195 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_04g0024760 | RBH | 0.261810 | 0.0 | 0.111752 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_04G0483900 | RBH | 3.2119875 | 2.087459 | 2.398028 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_04g0025240 | RBH | 0.105173 | 0.051932 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_04g0025060 | RBH | 0.215604 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_04g0025130 | RBH | 3.611312 | 0.0 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_04g0025580 | RBH | 0.734199 | 0.188123 | 0.181110 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_04g0025740 | RBH | 0.273725 | 0.0 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_04G024980 | RBH | 0.324214 | 0.0 | 0.139349 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_04g0024870 | RBH | 1.907870 | 0.0 | 1.017912 |
