Basic Info

Gene ID OGI # | Score   Accession | Assembly | Annotation Location Links
LOC_Os04g51350 OGI:04090160 | 16/16 Nipponbare | IRGSP 1.0 | MSU Chr04:30410105-30413205
Gene Symbol MPR25
DNA seq

ATCGAATCGTCTGTGGCGCCCGCGAAGCAACGGAAGAGATGAGGAGATGACTCGGATGAGCGGAAGCTGCAGGGAGCGAGTCGTCGTCGTCGTCGTCACCGCGAGGCGCCGCGCCAACCTCTCATGTCCTCTCCTCGCTGCGCCGTCTCGCTCCCACCCACCGCCGCGGCGACCACCGCCACCAATGGCGGAGGCGGCGGGAGGAGGAACGCGCAGCCGGCAGCGGCGACGGCGGCGTCGCAGGTGAAGAAGCTGTGCAAGCAGGGGCGGCTGGACCACGCGCGGCGGCTGCTCCTCGAGGCGCTTCCCCGGCCGCCACCGACGCTGCTCTGCAACGCGCTCCTCATCGCCTACGCCGCCCGCGCGCTCCCGGAGGAGGCGCTCCGCCTCTACGCTCTCCTCAACCACGCCGCGCGCCCGCCGGTCCGCTCCGACCACTACACCTACTCCGCCGCGCTCACCGCCTGCGCACGCTCCCGCCGCCTCCGCCTCGGGAGGTCCGTCCACGCGCACATGCTCCGGCGCGCCCGCTCCCTCCCGGACACCGCCGTCCTCCGCAACTCCCTCCTCAACCTCTACGCCTCCAGCGTGCGGTACCGGGAGGCACGCGTCGACGTCGTCCGGAGGCTGTTCGACGCAATGCCTAAGAGGAACGTGGTTTCTTGGAACACTCTGTTCGGCTGGTACGTCAAGACCGGGCGTCCCCAGGAAGCCCTGGAGCTGTTTGTGCGCATGCTAGAAGATGGTTTCAGGCCCACGCCGGTCAGCTTCGTGAATATATTTCCGGCTGCTGTGGCTGACGATCCAAGCTGGCCATTCCAGCTCTACGGATTACTTGTGAAGTATGGGGTAGAGTATATCAACGATCTGTTTGTTGTGAGCTCAGCAATCGACATGTTCTCCGAATTTGGGGATGTGCAATCAGCTCGGAGGGTGTTTGATCGTGCTGCCAAGAAGAACACCGAGGTTTGGAACACCATGATCACTGGGTATGTACAGAATGGCCAGTTTTCTGAAGCCATTGATCTCTTCAGCAAAATCTTGGGATCCCGAGAGGTTCCATTGGATGTTGTGACCTTCTTATCGGCCCTCACAGCTGCCTCACAGTCACAGGATGTTAGCTTGGGTCAGCAGCTGCATGGCTATTTGATTAAAGGAATGCATAGGACATTGCCTGTAATACTCGGTAATGCACTTGTTGTGATGTACTCAAGATGTGGCAATGTCCAAACTGCCTTTGATCTCTTCGACCGGTTGCCAGAGAAGGACATTGTTACTTGGAATACCATGGTGACTGCTTTTATACAGAACGATTTTGACTTGGAAGGCTTGCTGCTCGTCTATGAGATGCAGAAATCAGGTTTTGCTGCTGATTCTGTGACATTGACTGCAGTTCTGTCAGCATCATCAAATACTGGAGACCTTCAGATCGGTAAACAAGCACATGGTTATCTTATCAGGCATGGTATCGAGGGTGAGGGCTTGGAGAGCTACCTAATAGACATGTATGCAAAATCTGGCCGTGTAGAAATGGCTCAGAGAGTGTTTGATAGCTTTAAAAATGCCAAGAGGGATGAAGTCACTTGGAATGCCATGATAGCGGGATACACACAGAGTGGACAGCCTGAAAAGGCAATCTTAGTATTCCGGGCAATGCTTGAGGCAGGTCTTGAACCTACTTCGGTGACACTTGCTTCGGTGCTACCTGCATGTGATCCTGTTGGAGGGGGCGTTTATTCTGGGAAGCAAATCCACTGTTTTGCTGTGCGCCGTTGTTTGGATACCAATGTCTTCGTAGGTACAGCTCTTATTGACATGTACTCTAAGTGTGGTGAGATCACTACAGCAGAAAATGTCTTTGGTGGCATGACGGGGAAGAGCACTGTCACCTATACGACAATGATATCTGGTCTTGGTCAGCATGGTTTCGGCAAAAAAGCGCTTGCTCTTTTCAACTCCATGCAAGAAAAGGGGTTGAAGCCTGATGCAGTGACCTTCTTGTCTGCGATTTCAGCATGTAATTACTCTGGACTCGTCGACGAAGGACTAGCTTTGTACAGGTCGATGGACTCATTTGGAATTTCGGCTACTCCTCAGCACCACTGCTGTGTTGCAGACTTGTTAGCTAAAGCTGGAAGGGTGGAGGAAGCATACGAGTTTATAGAGGGGCTGGGGGAGGAGGGCAACTTTGTTGCCATCTGGGGATCGCTGCTTGCATCCTGCAAAGCTCAGGGCAAGCAAGAGTTGGCAAAGTTGGTGACCAAGAAGCTGCTTGACATCGAGAAGCAGTACGGTCATGCAGGCTACAGCGTTTTGTTGTCACAGGTCCTTGCTGCTGAAAGTAACTGGAATAGTGCTGATAGTCTAAGAAAGGAGATGAGGGCAAGGGGATTGAAGAAAGAAGCAGGTTCTAGTTGGATTAAAGTCCAGAACGCAGCATTGGAACACAAGTTTATCGAAAAAGACCAAAATTATGTCGAAAATGAGCACATGTTCTCGATTCTGGATGGTGATGCCGACAGTACGGATAGACTTTAACATGTTTCAATACCTTTTGGCACGCAAGATTGCAGATATGAGATTCCTAATCCTATTGTGGTGATTACCTCACGCTGACAGACTAGGCTCCTGTTTTACCTGCAGTTTAACATGATTTATCTTCATTCAGAAATCAGAATTGATGCTCCTCATAGTAATACTTGACTGGATGGAAACTTGGAAAGACACCTAGCCCACAAACCTCATGCGGCGGCCACACGGTGAACTTGTGCTGCGAGACATCAATCTATGGATGAGGTTGATACCAATGATGTGCCAGATGAAGAGCAAGCTGCAATCTTGCAGGTGGCCAGGTTGTAACTTGTATTCAGTAGTACGCATATCTTGACAAGCACAGCGCCCTCCTTAGGGATTCTGGGTGAATTGTACAGCTACATTTGCTTATAATCGTCTAGAAATAGGTGAGTACTGTCATAGAACGAGCAACGTGATTAGGCAACGGGATTTTTTTTGGTTGTGAACGTACATACAATATCTTAAATGAAGATTATTCTCACATGATTACGGCCAATGCAAAGGAGGATTTTGCATTGGTTTTCTGT

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CDS seq

ATGTCCTCTCCTCGCTGCGCCGTCTCGCTCCCACCCACCGCCGCGGCGACCACCGCCACCAATGGCGGAGGCGGCGGGAGGAGGAACGCGCAGCCGGCAGCGGCGACGGCGGCGTCGCAGGTGAAGAAGCTGTGCAAGCAGGGGCGGCTGGACCACGCGCGGCGGCTGCTCCTCGAGGCGCTTCCCCGGCCGCCACCGACGCTGCTCTGCAACGCGCTCCTCATCGCCTACGCCGCCCGCGCGCTCCCGGAGGAGGCGCTCCGCCTCTACGCTCTCCTCAACCACGCCGCGCGCCCGCCGGTCCGCTCCGACCACTACACCTACTCCGCCGCGCTCACCGCCTGCGCACGCTCCCGCCGCCTCCGCCTCGGGAGGTCCGTCCACGCGCACATGCTCCGGCGCGCCCGCTCCCTCCCGGACACCGCCGTCCTCCGCAACTCCCTCCTCAACCTCTACGCCTCCAGCGTGCGGTACCGGGAGGCACGCGTCGACGTCGTCCGGAGGCTGTTCGACGCAATGCCTAAGAGGAACGTGGTTTCTTGGAACACTCTGTTCGGCTGGTACGTCAAGACCGGGCGTCCCCAGGAAGCCCTGGAGCTGTTTGTGCGCATGCTAGAAGATGGTTTCAGGCCCACGCCGGTCAGCTTCGTGAATATATTTCCGGCTGCTGTGGCTGACGATCCAAGCTGGCCATTCCAGCTCTACGGATTACTTGTGAAGTATGGGGTAGAGTATATCAACGATCTGTTTGTTGTGAGCTCAGCAATCGACATGTTCTCCGAATTTGGGGATGTGCAATCAGCTCGGAGGGTGTTTGATCGTGCTGCCAAGAAGAACACCGAGGTTTGGAACACCATGATCACTGGGTATGTACAGAATGGCCAGTTTTCTGAAGCCATTGATCTCTTCAGCAAAATCTTGGGATCCCGAGAGGTTCCATTGGATGTTGTGACCTTCTTATCGGCCCTCACAGCTGCCTCACAGTCACAGGATGTTAGCTTGGGTCAGCAGCTGCATGGCTATTTGATTAAAGGAATGCATAGGACATTGCCTGTAATACTCGGTAATGCACTTGTTGTGATGTACTCAAGATGTGGCAATGTCCAAACTGCCTTTGATCTCTTCGACCGGTTGCCAGAGAAGGACATTGTTACTTGGAATACCATGGTGACTGCTTTTATACAGAACGATTTTGACTTGGAAGGCTTGCTGCTCGTCTATGAGATGCAGAAATCAGGTTTTGCTGCTGATTCTGTGACATTGACTGCAGTTCTGTCAGCATCATCAAATACTGGAGACCTTCAGATCGGTAAACAAGCACATGGTTATCTTATCAGGCATGGTATCGAGGGTGAGGGCTTGGAGAGCTACCTAATAGACATGTATGCAAAATCTGGCCGTGTAGAAATGGCTCAGAGAGTGTTTGATAGCTTTAAAAATGCCAAGAGGGATGAAGTCACTTGGAATGCCATGATAGCGGGATACACACAGAGTGGACAGCCTGAAAAGGCAATCTTAGTATTCCGGGCAATGCTTGAGGCAGGTCTTGAACCTACTTCGGTGACACTTGCTTCGGTGCTACCTGCATGTGATCCTGTTGGAGGGGGCGTTTATTCTGGGAAGCAAATCCACTGTTTTGCTGTGCGCCGTTGTTTGGATACCAATGTCTTCGTAGGTACAGCTCTTATTGACATGTACTCTAAGTGTGGTGAGATCACTACAGCAGAAAATGTCTTTGGTGGCATGACGGGGAAGAGCACTGTCACCTATACGACAATGATATCTGGTCTTGGTCAGCATGGTTTCGGCAAAAAAGCGCTTGCTCTTTTCAACTCCATGCAAGAAAAGGGGTTGAAGCCTGATGCAGTGACCTTCTTGTCTGCGATTTCAGCATGTAATTACTCTGGACTCGTCGACGAAGGACTAGCTTTGTACAGGTCGATGGACTCATTTGGAATTTCGGCTACTCCTCAGCACCACTGCTGTGTTGCAGACTTGTTAGCTAAAGCTGGAAGGGTGGAGGAAGCATACGAGTTTATAGAGGGGCTGGGGGAGGAGGGCAACTTTGTTGCCATCTGGGGATCGCTGCTTGCATCCTGCAAAGCTCAGGGCAAGCAAGAGTTGGCAAAGTTGGTGACCAAGAAGCTGCTTGACATCGAGAAGCAGTACGGTCATGCAGGCTACAGCGTTTTGTTGTCACAGGTCCTTGCTGCTGAAAGTAACTGGAATAGTGCTGATAGTCTAAGAAAGGAGATGAGGGCAAGGGGATTGAAGAAAGAAGCAGGTTCTAGTTGGATTAAAGTCCAGAACGCAGCATTGGAACACAAGTTTATCGAAAAAGACCAAAATTATGTCGAAAATGAGCACATGTTCTCGATTCTGGATGGTGATGCCGACAGTACGGATAGACTTTAA

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Protein seq

MSSPRCAVSLPPTAAATTATNGGGGGRRNAQPAAATAASQVKKLCKQGRLDHARRLLLEALPRPPPTLLCNALLIAYAARALPEEALRLYALLNHAARPPVRSDHYTYSAALTACARSRRLRLGRSVHAHMLRRARSLPDTAVLRNSLLNLYASSVRYREARVDVVRRLFDAMPKRNVVSWNTLFGWYVKTGRPQEALELFVRMLEDGFRPTPVSFVNIFPAAVADDPSWPFQLYGLLVKYGVEYINDLFVVSSAIDMFSEFGDVQSARRVFDRAAKKNTEVWNTMITGYVQNGQFSEAIDLFSKILGSREVPLDVVTFLSALTAASQSQDVSLGQQLHGYLIKGMHRTLPVILGNALVVMYSRCGNVQTAFDLFDRLPEKDIVTWNTMVTAFIQNDFDLEGLLLVYEMQKSGFAADSVTLTAVLSASSNTGDLQIGKQAHGYLIRHGIEGEGLESYLIDMYAKSGRVEMAQRVFDSFKNAKRDEVTWNAMIAGYTQSGQPEKAILVFRAMLEAGLEPTSVTLASVLPACDPVGGGVYSGKQIHCFAVRRCLDTNVFVGTALIDMYSKCGEITTAENVFGGMTGKSTVTYTTMISGLGQHGFGKKALALFNSMQEKGLKPDAVTFLSAISACNYSGLVDEGLALYRSMDSFGISATPQHHCCVADLLAKAGRVEEAYEFIEGLGEEGNFVAIWGSLLASCKAQGKQELAKLVTKKLLDIEKQYGHAGYSVLLSQVLAAESNWNSADSLRKEMRARGLKKEAGSSWIKVQNAALEHKFIEKDQNYVENEHMFSILDGDADSTDRL

Function Pentatricopeptide repeat-containing protein At3g22150, chloroplastic [UniProtKB/Swiss-Prot:Q9LIE7]

Transcripts

Gene Transcript Chromosome Start End Strand Source
LOC_Os04g51350 LOC_Os04g51350.1 Chr04 30410105 30413205 + MSU_osa1r7
CDS seq

ATGTCCTCTCCTCGCTGCGCCGTCTCGCTCCCACCCACCGCCGCGGCGACCACCGCCACCAATGGCGGAGGCGGCGGGAGGAGGAACGCGCAGCCGGCAGCGGCGACGGCGGCGTCGCAGGTGAAGAAGCTGTGCAAGCAGGGGCGGCTGGACCACGCGCGGCGGCTGCTCCTCGAGGCGCTTCCCCGGCCGCCACCGACGCTGCTCTGCAACGCGCTCCTCATCGCCTACGCCGCCCGCGCGCTCCCGGAGGAGGCGCTCCGCCTCTACGCTCTCCTCAACCACGCCGCGCGCCCGCCGGTCCGCTCCGACCACTACACCTACTCCGCCGCGCTCACCGCCTGCGCACGCTCCCGCCGCCTCCGCCTCGGGAGGTCCGTCCACGCGCACATGCTCCGGCGCGCCCGCTCCCTCCCGGACACCGCCGTCCTCCGCAACTCCCTCCTCAACCTCTACGCCTCCAGCGTGCGGTACCGGGAGGCACGCGTCGACGTCGTCCGGAGGCTGTTCGACGCAATGCCTAAGAGGAACGTGGTTTCTTGGAACACTCTGTTCGGCTGGTACGTCAAGACCGGGCGTCCCCAGGAAGCCCTGGAGCTGTTTGTGCGCATGCTAGAAGATGGTTTCAGGCCCACGCCGGTCAGCTTCGTGAATATATTTCCGGCTGCTGTGGCTGACGATCCAAGCTGGCCATTCCAGCTCTACGGATTACTTGTGAAGTATGGGGTAGAGTATATCAACGATCTGTTTGTTGTGAGCTCAGCAATCGACATGTTCTCCGAATTTGGGGATGTGCAATCAGCTCGGAGGGTGTTTGATCGTGCTGCCAAGAAGAACACCGAGGTTTGGAACACCATGATCACTGGGTATGTACAGAATGGCCAGTTTTCTGAAGCCATTGATCTCTTCAGCAAAATCTTGGGATCCCGAGAGGTTCCATTGGATGTTGTGACCTTCTTATCGGCCCTCACAGCTGCCTCACAGTCACAGGATGTTAGCTTGGGTCAGCAGCTGCATGGCTATTTGATTAAAGGAATGCATAGGACATTGCCTGTAATACTCGGTAATGCACTTGTTGTGATGTACTCAAGATGTGGCAATGTCCAAACTGCCTTTGATCTCTTCGACCGGTTGCCAGAGAAGGACATTGTTACTTGGAATACCATGGTGACTGCTTTTATACAGAACGATTTTGACTTGGAAGGCTTGCTGCTCGTCTATGAGATGCAGAAATCAGGTTTTGCTGCTGATTCTGTGACATTGACTGCAGTTCTGTCAGCATCATCAAATACTGGAGACCTTCAGATCGGTAAACAAGCACATGGTTATCTTATCAGGCATGGTATCGAGGGTGAGGGCTTGGAGAGCTACCTAATAGACATGTATGCAAAATCTGGCCGTGTAGAAATGGCTCAGAGAGTGTTTGATAGCTTTAAAAATGCCAAGAGGGATGAAGTCACTTGGAATGCCATGATAGCGGGATACACACAGAGTGGACAGCCTGAAAAGGCAATCTTAGTATTCCGGGCAATGCTTGAGGCAGGTCTTGAACCTACTTCGGTGACACTTGCTTCGGTGCTACCTGCATGTGATCCTGTTGGAGGGGGCGTTTATTCTGGGAAGCAAATCCACTGTTTTGCTGTGCGCCGTTGTTTGGATACCAATGTCTTCGTAGGTACAGCTCTTATTGACATGTACTCTAAGTGTGGTGAGATCACTACAGCAGAAAATGTCTTTGGTGGCATGACGGGGAAGAGCACTGTCACCTATACGACAATGATATCTGGTCTTGGTCAGCATGGTTTCGGCAAAAAAGCGCTTGCTCTTTTCAACTCCATGCAAGAAAAGGGGTTGAAGCCTGATGCAGTGACCTTCTTGTCTGCGATTTCAGCATGTAATTACTCTGGACTCGTCGACGAAGGACTAGCTTTGTACAGGTCGATGGACTCATTTGGAATTTCGGCTACTCCTCAGCACCACTGCTGTGTTGCAGACTTGTTAGCTAAAGCTGGAAGGGTGGAGGAAGCATACGAGTTTATAGAGGGGCTGGGGGAGGAGGGCAACTTTGTTGCCATCTGGGGATCGCTGCTTGCATCCTGCAAAGCTCAGGGCAAGCAAGAGTTGGCAAAGTTGGTGACCAAGAAGCTGCTTGACATCGAGAAGCAGTACGGTCATGCAGGCTACAGCGTTTTGTTGTCACAGGTCCTTGCTGCTGAAAGTAACTGGAATAGTGCTGATAGTCTAAGAAAGGAGATGAGGGCAAGGGGATTGAAGAAAGAAGCAGGTTCTAGTTGGATTAAAGTCCAGAACGCAGCATTGGAACACAAGTTTATCGAAAAAGACCAAAATTATGTCGAAAATGAGCACATGTTCTCGATTCTGGATGGTGATGCCGACAGTACGGATAGACTTTAA

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Protein seq

MSSPRCAVSLPPTAAATTATNGGGGGRRNAQPAAATAASQVKKLCKQGRLDHARRLLLEALPRPPPTLLCNALLIAYAARALPEEALRLYALLNHAARPPVRSDHYTYSAALTACARSRRLRLGRSVHAHMLRRARSLPDTAVLRNSLLNLYASSVRYREARVDVVRRLFDAMPKRNVVSWNTLFGWYVKTGRPQEALELFVRMLEDGFRPTPVSFVNIFPAAVADDPSWPFQLYGLLVKYGVEYINDLFVVSSAIDMFSEFGDVQSARRVFDRAAKKNTEVWNTMITGYVQNGQFSEAIDLFSKILGSREVPLDVVTFLSALTAASQSQDVSLGQQLHGYLIKGMHRTLPVILGNALVVMYSRCGNVQTAFDLFDRLPEKDIVTWNTMVTAFIQNDFDLEGLLLVYEMQKSGFAADSVTLTAVLSASSNTGDLQIGKQAHGYLIRHGIEGEGLESYLIDMYAKSGRVEMAQRVFDSFKNAKRDEVTWNAMIAGYTQSGQPEKAILVFRAMLEAGLEPTSVTLASVLPACDPVGGGVYSGKQIHCFAVRRCLDTNVFVGTALIDMYSKCGEITTAENVFGGMTGKSTVTYTTMISGLGQHGFGKKALALFNSMQEKGLKPDAVTFLSAISACNYSGLVDEGLALYRSMDSFGISATPQHHCCVADLLAKAGRVEEAYEFIEGLGEEGNFVAIWGSLLASCKAQGKQELAKLVTKKLLDIEKQYGHAGYSVLLSQVLAAESNWNSADSLRKEMRARGLKKEAGSSWIKVQNAALEHKFIEKDQNYVENEHMFSILDGDADSTDRL

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Event Type Chromosome Start End Strand Alternative mRNAs Total mRNAs Source

Expression

Leaf Root Panicle
FPKM 1.286970 1.176898 0.049370

Homologues

Genome & Annotation Homologs Type Expression(FPKM)
Leaf Root Panicle
Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) OsNip_04g0602600 RBH 1.931116 1.726752 0.194615
Nipponbare | IRGSP 1.0 | MSU LOC_Os02g46980 SBH 1.115855 1.342147 0.399383
Nipponbare | IRGSP 1.0 | RAP-db Os04g0602600 RBH None None None
Azucena | AzucenaRS1 | Gramene(+IsoSeq) OsAzu_04g0025530 RBH 0.181159 0.0 1.207548
KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) OsKeNa_04g0026300 RBH 0.050617 0.0 0.125289
CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) OsCMeo_04g0026050 RBH 0.494512 0.0 1.826116
ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) OsARC_04g0025750 RBH 0.041961 0.046329 None
PR 106 | Os127742RS1 | Gramene(+IsoSeq) OsPr106_04g0026010 RBH 1.236029 0.0 2.243883
Minghui 63 | MH63RS3 | HZAU OsMH63_04G0479900 RBH 3.730022 1.920511 0.6179195
IR 64 | OsIR64RS1 | Gramene(+IsoSeq) OsIR64_04g0024760 RBH 0.261810 0.0 0.111752
Zhenshan 97 | ZS97RS3 | HZAU OsZS97_04G0483900 RBH 3.2119875 2.087459 2.398028
LIMA | Os127564RS1 | Gramene(+IsoSeq) OsLima_04g0025240 RBH 0.105173 0.051932 None
KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) OsKYG_04g0025060 RBH 0.215604 0.0 None
GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) OsGoSa_04g0025130 RBH 3.611312 0.0 None
LIU XU | Os125827RS1 | Gramene(+IsoSeq) OsLiXu_04g0025580 RBH 0.734199 0.188123 0.181110
LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) OsLaMu_04g0025740 RBH 0.273725 0.0 None
N22 | OsN22RS2 | Gramene(+IsoSeq) OsN22_04G024980 RBH 0.324214 0.0 0.139349
NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) OsNaBo_04g0024870 RBH 1.907870 0.0 1.017912
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National Key Laboratory of Crop Genetic Improvement

Huazhong Agricultural University

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