Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| Os04g0522100 | OGI:04078720 | 16/16 | Nipponbare | IRGSP 1.0 | RAP-db | Chr04:26120339-26120817 | ||||||||
| Gene Symbol | CAL2, DEFL12, OsDEFL12, OsDf-12, Df-12, OsCAL2 | ||||||||||
| DNA seq | TGCTAGCTGCTCAAGTTCGTGTACAACATCCTCACAGATTCCATCGCTATAGTTGAGCGCAGGTGTTCCTAAGGAAGCAGAGCAAATGGCTCCCATCTCTCGCCGCATTGCGCCCCTCCTCTTCCTGATGCTCCTCATCCTCGTCGCCTCAGGTTCATACACTTGTCCTCTCGTCATCAGTCAATCAGTAGTATGAAGAAGAACAGAAACCAATGTGATGTATTGGATTACGTTTGATGGATTGTGCTGTACCATTCGTGCGTGCAGAGATGGGGACGACGAGGGTGGCGGAGGCGAGGCATTGCGTGTCGCAGAGCCACAGGTTCGTGGGCGCGTGCATGAGGAAGAGCAACTGCGAGCACGTCTGCATGACCGAGGGCTTCCCGTGGGGGGAGTGCAGGTTCCACGGCATCGAGCGCAAGTGCTTCTGCAAGAAGCGCTGCTAGCCTGCTTAGCCGGAGAGGCCCAGCCCCAGGCCA
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| CDS seq | ATGGCTCCCATCTCTCGCCGCATTGCGCCCCTCCTCTTCCTGATGCTCCTCATCCTCGTCGCCTCAGAGATGGGGACGACGAGGGTGGCGGAGGCGAGGCATTGCGTGTCGCAGAGCCACAGGTTCGTGGGCGCGTGCATGAGGAAGAGCAACTGCGAGCACGTCTGCATGACCGAGGGCTTCCCGTGGGGGGAGTGCAGGTTCCACGGCATCGAGCGCAAGTGCTTCTGCAAGAAGCGCTGCTAG |
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| Protein seq | MAPISRRIAPLLFLMLLILVASEMGTTRVAEARHCVSQSHRFVGACMRKSNCEHVCMTEGFPWGECRFHGIERKCFCKKRC |
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| Function | Defensin-like protein CAL1 [UniProtKB/Swiss-Prot:Q6K209] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| Os04g0522100 | Os04t0522100-01 | Chr04 | 26120339 | 26120817 | + | irgsp1_rep | ||
| CDS seq | ATGGCTCCCATCTCTCGCCGCATTGCGCCCCTCCTCTTCCTGATGCTCCTCATCCTCGTCGCCTCAGAGATGGGGACGACGAGGGTGGCGGAGGCGAGGCATTGCGTGTCGCAGAGCCACAGGTTCGTGGGCGCGTGCATGAGGAAGAGCAACTGCGAGCACGTCTGCATGACCGAGGGCTTCCCGTGGGGGGAGTGCAGGTTCCACGGCATCGAGCGCAAGTGCTTCTGCAAGAAGCGCTGCTAG
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| Protein seq | MAPISRRIAPLLFLMLLILVASEMGTTRVAEARHCVSQSHRFVGACMRKSNCEHVCMTEGFPWGECRFHGIERKCFCKKRC |
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | None | None | None |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_04g0522100 | RBH | 0.0 | 0.0 | 0.0 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os04g44130 | RBH | 0.0 | 0.0 | 0.0 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os02g0629800 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_04g0020260 | RBH | 0.0 | 0.0 | 0.0 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_04g0021030 | RBH | 0.0 | 1.844606 | 0.0 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_04g0020750 | RBH | 0.0 | 0.0 | 0.0 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_04g0020480 | RBH | 0.0 | 0.404710 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_04g0020670 | RBH | 0.0 | 34.743534 | 0.0 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_04G0409000 | RBH | 0.0342515 | 2.2928965 | 0 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_04g0019470 | RBH | 0.0 | 1.064945 | 0.0 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_04G0409600 | RBH | 0.06545 | 0.030259 | 0.0307915 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_04g0019960 | RBH | 0.0 | 0.305866 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_04g0019820 | RBH | 0.0 | 10.381577 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_04g0019930 | RBH | 0.0 | 0.000000 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_04g0020300 | RBH | 0.0 | 0.712235 | 0.0 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_04g0020470 | RBH | 0.0 | 0.0 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_04G019740 | RBH | 0.0 | 4.472043 | 0.0 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_04g0019690 | RBH | 0.0 | 0.0 | 0.0 |
