Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| Os02g0629800 | OGI:02071390 | 14/16 | Nipponbare | IRGSP 1.0 | RAP-db | Chr02:25190487-25191188 | ||||||||
| Gene Symbol | CAL1, OsCPT1, CPT1, DEFL7, OsDEFL7, OsDf-07, Df-07, OsPR12, PR12, DEF7, OsDEF7, OsAFP1, AFP1 | ||||||||||
| DNA seq | AACCAAGAGCTAGCACAGCACCGGTGGCAGTAGCAAAGTAGCAGCCTCATCACTCATCAGTGAGCGCAGTTCGAGTCGCCGGTACAGATGGCTCCGTCTCGTCGCATGGTCGCGTCCGCCTTCCTCCTCCTGGCCATCCTCGTCGCCACAGGTACGTGCTCCTCGTCGAGCACTACATTGGCTGCGTTAAGCAATTTTTTGCATGCACGGATGCAGTGCAATGTGTGATGGTTGTGTGGTTGTGTGTGCAGAGATGGGGACGACCAAGGTGGCGGAGGCGAGGCACTGCCTGTCGCAGAGCCACAGGTTCAAGGGCATGTGCGTGAGCAGCAACAACTGCGCCAACGTGTGCAGGACGGAGAGCTTCCCCGACGGCGAGTGCAAGTCGCACGGCCTCGAGCGCAAGTGCTTCTGCAAGAAGGTCTGCTAGTGCATGCTAGCCCCGCTGTCTCTGCAGTCGCATTGCTCGTCGGCTGTGTATCTGCAGAGATTGTAGTCGCGTGTTCTCCTTTGTCTGTTGTTCATGACGAGCTTCTGTTCTTGGCTTACAGGCTAGTTGAGTTGCTTTCGATTATCCTTGCTTAGAATAAGTAATAAGTACGCGCTGGATACATGCTCCAGCTTAGTTAGTTGTTGGGTATTTGCAAGCTGCTGTCATGTAAGGTTCCACATTTCAGCATTAATGAATTGGCATACGTGATG
More
|
||||||||||
| CDS seq | ATGGCTCCGTCTCGTCGCATGGTCGCGTCCGCCTTCCTCCTCCTGGCCATCCTCGTCGCCACAGAGATGGGGACGACCAAGGTGGCGGAGGCGAGGCACTGCCTGTCGCAGAGCCACAGGTTCAAGGGCATGTGCGTGAGCAGCAACAACTGCGCCAACGTGTGCAGGACGGAGAGCTTCCCCGACGGCGAGTGCAAGTCGCACGGCCTCGAGCGCAAGTGCTTCTGCAAGAAGGTCTGCTAG |
||||||||||
| Protein seq | MAPSRRMVASAFLLLAILVATEMGTTKVAEARHCLSQSHRFKGMCVSSNNCANVCRTESFPDGECKSHGLERKCFCKKVC |
||||||||||
| Function | Defensin-like protein CAL1 [UniProtKB/Swiss-Prot:Q6K209] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| Os02g0629800 | Os02t0629800-01 | Chr02 | 25190487 | 25191188 | + | irgsp1_rep | ||
| CDS seq | ATGGCTCCGTCTCGTCGCATGGTCGCGTCCGCCTTCCTCCTCCTGGCCATCCTCGTCGCCACAGAGATGGGGACGACCAAGGTGGCGGAGGCGAGGCACTGCCTGTCGCAGAGCCACAGGTTCAAGGGCATGTGCGTGAGCAGCAACAACTGCGCCAACGTGTGCAGGACGGAGAGCTTCCCCGACGGCGAGTGCAAGTCGCACGGCCTCGAGCGCAAGTGCTTCTGCAAGAAGGTCTGCTAG
More
|
|||||||
| Protein seq | MAPSRRMVASAFLLLAILVATEMGTTKVAEARHCLSQSHRFKGMCVSSNNCANVCRTESFPDGECKSHGLERKCFCKKVC |
|||||||
| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | None | None | None |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_02g0629800 | RBH | 0.0 | 0.0 | 1.982447 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os02g41904 | RBH | 0.0 | 0.0 | 0.481525 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os04g0522100 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_02g0025970 | RBH | 0.0 | 0.0 | 6.314027 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_02g0026100 | RBH | 0.0 | 18.747025 | 1.247880 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_02g0025930 | RBH | 0.0 | 24.047733 | 5.448165 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_02g0025520 | RBH | 0.0 | 6.724966 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_02g0025630 | RBH | 0.0 | 125.793144 | 5.376024 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_02G0409100 | SBH | 12.2248105 | 10.9385265 | 22.5403825 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_02g0025520 | SBH | 0.0 | 1.631495 | 0.337303 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_02G0437900 | SBH | 16.708144 | 11.839568 | 16.5057285 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_02g0025720 | RBH | 0.0 | 0.806700 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_02g0025500 | RBH | 0.0 | 129.430603 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_02g0025840 | RBH | 0.0 | 155.282593 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_02g0025740 | RBH | 0.0 | 9.520677 | 1.528209 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_02g0025300 | RBH | 0.0 | 52.818844 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_02G025910 | RBH | 0.0 | 65.235703 | 4.800715 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_02g0025760 | RBH | 0.0 | 26.048681 | 6.497638 |
