Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| Os04g0369600 | OGI:04058660 | 7/16 | Nipponbare | IRGSP 1.0 | RAP-db | Chr04:17960744-17962821 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | CTAGTCGGTCGCTTGTGAAAACATGTTTTGTCCGCCTTCAAAAATACTTTATCTCATAGTGACTCCGAAGATGTAGTAGCGTGAATTGAAGACACTATAAAGAATGAATGCTATTATATGCTCGCGAAAAAAAAATGAACAATATTACTACTCGTTATGTACGGGAAATAAAATAAACAGTCCAAACATGTAGCATGAGACGGAAGCATGATAGTACCAATAGCGATTTTTGCCCCAGAACTGAGTGGTAGTTGATCTCTCTCGCATGTCCCATTTTGGGCGTTGCCTTTCGGATAACCCGGAGGGCACACGCACTTGAATGCACCGGGAGTGTTAACGCAAGTTCCAGGCACAGCACACGGGTACTTCGACCAATCAGTGCACTCGTTGATATCTGCAACCAAATACATGTTTAAAAATATGAGGGAATAAGCGAAACGGCATATTTTGCAAACGAAAAATAATTTATAAATAAAACTTTCATATACGTGTTCTTAGCGGTCTAAAAACAATGGCTGAAAAATAAATTTCGATGAAAAAAACCCCAAAATCAACTTCAAATTTAAGGTTGAAAATTTAAATTTTGGCTAATAAGCATACGCGAAAAGATGAGGCTATCTGAGCACGTGCAAATATGATTACAAAAGCTAAAAGGACCTATCTTATTTGTAACGTGACTAAGTTTATTCTTGTCTATCAATCACTTTCAAACACTACATCAGTACCTTTATATTTTTCTCCCTGTGGTGAAGCAAATATTAATGTTGTAACCTAAAAGGTAAAGTATTATGCTTTCGTCTAACTCCTTAGCAGAATGGAAACTAGCTAGAAATAATGATTTATACAAGTATAATAATTCATCTAGAAAGAAACCAAACTAAAGTCGCACTTCATTTTTACCGAATTTGCAGTTTTTCAACTGTGCAAGTTTAGCAAATGGCTTGTATATGTAACTGTAGTAAATGTCTTGTGCAAGTTAGCTTGAATGACGGATAAGAAAATATCAGACAGACTGATAATAGGAAAGCAGAAGACTGAAGTTAGAATAAGGAGCATCCTATATAAATTAAGTAGGCAAGGGGTTGACGCGGCATATACTGATACGGTCAACACAGAGAAATCGTTCATTTCGTACCTTTGCATCCAAGCTCTGGATCATCCAGGTAAGGATTTCCATGAAATCCTTCCTTGCATTTGCAGATATAGCCTGGTCCATTAGACGAGTTGAAACAGTCACTGTTGTTACTGATGCACGCGTATTTGGGATCGGGATTGGGATTCCGCCGCGCTGCCTCGCACGTTTGGTTCCCAATGGCCCAATCCAGAAGCAACGGCGCCTGCCCGGCGTATGTGTCATTGAACGCTGATGACATCGCATAGCTCGTGGAAAAGGTGAAGTTTGATGCTTCCACGAGTGCTGCGTAGCTGCAACGGCTCATGTTATAGATCTTCGCTGTGTTAAAGCGGTCATCGAACCAGATCCCATAGTTCTGAAGCCCCTTTGGGATGGTGGTCTGACAGCAGCCTATCCCAGAGCAGGTTCCATCGGAGAGACTTGCAAGGTCGCCCTGGCTATTACATGTGGCCACGCATCCGGTGGTTAAACTACTGCTTTCCAGCTGTTGCGGCTTTGTGATGGTGATGTAAGCAAGTGTTCGGCATCCGATGACCGTGAACTTGTTGCCAGTATCAGATAATCTGTATGGTGTATCCCTGAAGGACAGAAACCAATTTATGGAGTCCATTGTTCTGTTAATCGTGTTATAGCACGACCAGGATATATCCATCTTTATCCGAACCTGAGATTCTGCTAGCAAGATGCCGCGCACCTCCACGTCATCCGAGAGAAACGGCTTGAGCAGCAGGCCGTCCCGTTTGCAGCTCACCTCAAAGCCAGGAATGGCGCAGCCTGGCTGATCGTCTTTCATCCCGAACGGATAAGGGATCGCTACGTCGCCGCAACTTCTACGGCAGGAAGATGCAACGGCGGGCAGGCATGCCACCGTTGCCACAGCAAGCCATAGAAGAGCTCTAGTTATCCCGCGGGGAGATGGCACGGGCGATGTTTCACTACTCAT
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| CDS seq | ATGAGTAGTGAAACATCGCCCGTGCCATCTCCCCGCGGGATAACTAGAGCTCTTCTATGGCTTGCTGTGGCAACGGTGGCATGCCTGCCCGCCGTTGCATCTTCCTGCCGTAGAAGTTGCGGCGACGTAGCGATCCCTTATCCGTTCGGGATGAAAGACGATCAGCCAGGCTGCGCCATTCCTGGCTTTGAGGTGAGCTGCAAACGGGACGGCCTGCTGCTCAAGCCGTTTCTCTCGGATGACGTGGAGGTGCGCGGCATCTTGCTAGCAGAATCTCAGGTTCGGATAAAGATGGATATATCCTGGTCGTGCTATAACACGATTAACAGAACAATGGACTCCATAAATTGGTTTCTGTCCTTCAGGGATACACCATACAGATTATCTGATACTGGCAACAAGTTCACGGTCATCGGATGCCGAACACTTGCTTACATCACCATCACAAAGCCGCAACAGCTGGAAAGCAGTAGTTTAACCACCGGATGCGTGGCCACATGTAATAGCCAGGGCGACCTTGCAAGTCTCTCCGATGGAACCTGCTCTGGGATAGGCTGCTGTCAGACCACCATCCCAAAGGGGCTTCAGAACTATGGGATCTGGTTCGATGACCGCTTTAACACAGCGAAGATCTATAACATGAGCCGTTGCAGCTACGCAGCACTCGTGGAAGCATCAAACTTCACCTTTTCCACGAGCTATGCGATGTCATCAGCGTTCAATGACACATACGCCGGGCAGGCGCCGTTGCTTCTGGATTGGGCCATTGGGAACCAAACGTGCGAGGCAGCGCGGCGGAATCCCAATCCCGATCCCAAATACGCGTGCATCAGTAACAACAGTGACTGTTTCAACTCGTCTAATGGACCAGGCTATATCTGCAAATGCAAGGAAGGATTTCATGGAAATCCTTACCTGGATGATCCAGAGCTTGGATGCAAAGATATCAACGAGTGCACTGATTGGTCGAAGTACCCGTGTGCTGTGCCTGGAACTTGCGTTAACACTCCCGGTGCATTCAAGTGCGTGTGCCCTCCGGGTTATCCGAAAGGCAACGCCCAAAATGGGACATGCGAGAGAGATCAACTACCACTCAGTTCTGGGGCAAAAATCGCTATTGGCGGACAAAACATGTTTTCACAAGCGACCGACTAG
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| Protein seq | MSSETSPVPSPRGITRALLWLAVATVACLPAVASSCRRSCGDVAIPYPFGMKDDQPGCAIPGFEVSCKRDGLLLKPFLSDDVEVRGILLAESQVRIKMDISWSCYNTINRTMDSINWFLSFRDTPYRLSDTGNKFTVIGCRTLAYITITKPQQLESSSLTTGCVATCNSQGDLASLSDGTCSGIGCCQTTIPKGLQNYGIWFDDRFNTAKIYNMSRCSYAALVEASNFTFSTSYAMSSAFNDTYAGQAPLLLDWAIGNQTCEAARRNPNPDPKYACISNNSDCFNSSNGPGYICKCKEGFHGNPYLDDPELGCKDINECTDWSKYPCAVPGTCVNTPGAFKCVCPPGYPKGNAQNGTCERDQLPLSSGAKIAIGGQNMFSQATD |
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| Function | Wall-associated receptor kinase 2 [UniProtKB/Swiss-Prot:Q9LMP1] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| Os04g0369600 | Os04t0369600-00 | Chr04 | 17960744 | 17962821 | - | irgsp1_rep | ||
| CDS seq | ATGAGTAGTGAAACATCGCCCGTGCCATCTCCCCGCGGGATAACTAGAGCTCTTCTATGGCTTGCTGTGGCAACGGTGGCATGCCTGCCCGCCGTTGCATCTTCCTGCCGTAGAAGTTGCGGCGACGTAGCGATCCCTTATCCGTTCGGGATGAAAGACGATCAGCCAGGCTGCGCCATTCCTGGCTTTGAGGTGAGCTGCAAACGGGACGGCCTGCTGCTCAAGCCGTTTCTCTCGGATGACGTGGAGGTGCGCGGCATCTTGCTAGCAGAATCTCAGGTTCGGATAAAGATGGATATATCCTGGTCGTGCTATAACACGATTAACAGAACAATGGACTCCATAAATTGGTTTCTGTCCTTCAGGGATACACCATACAGATTATCTGATACTGGCAACAAGTTCACGGTCATCGGATGCCGAACACTTGCTTACATCACCATCACAAAGCCGCAACAGCTGGAAAGCAGTAGTTTAACCACCGGATGCGTGGCCACATGTAATAGCCAGGGCGACCTTGCAAGTCTCTCCGATGGAACCTGCTCTGGGATAGGCTGCTGTCAGACCACCATCCCAAAGGGGCTTCAGAACTATGGGATCTGGTTCGATGACCGCTTTAACACAGCGAAGATCTATAACATGAGCCGTTGCAGCTACGCAGCACTCGTGGAAGCATCAAACTTCACCTTTTCCACGAGCTATGCGATGTCATCAGCGTTCAATGACACATACGCCGGGCAGGCGCCGTTGCTTCTGGATTGGGCCATTGGGAACCAAACGTGCGAGGCAGCGCGGCGGAATCCCAATCCCGATCCCAAATACGCGTGCATCAGTAACAACAGTGACTGTTTCAACTCGTCTAATGGACCAGGCTATATCTGCAAATGCAAGGAAGGATTTCATGGAAATCCTTACCTGGATGATCCAGAGCTTGGATGCAAAGATATCAACGAGTGCACTGATTGGTCGAAGTACCCGTGTGCTGTGCCTGGAACTTGCGTTAACACTCCCGGTGCATTCAAGTGCGTGTGCCCTCCGGGTTATCCGAAAGGCAACGCCCAAAATGGGACATGCGAGAGAGATCAACTACCACTCAGTTCTGGGGCAAAAATCGCTATTGGCGGACAAAACATGTTTTCACAAGCGACCGACTAG
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| Protein seq | MSSETSPVPSPRGITRALLWLAVATVACLPAVASSCRRSCGDVAIPYPFGMKDDQPGCAIPGFEVSCKRDGLLLKPFLSDDVEVRGILLAESQVRIKMDISWSCYNTINRTMDSINWFLSFRDTPYRLSDTGNKFTVIGCRTLAYITITKPQQLESSSLTTGCVATCNSQGDLASLSDGTCSGIGCCQTTIPKGLQNYGIWFDDRFNTAKIYNMSRCSYAALVEASNFTFSTSYAMSSAFNDTYAGQAPLLLDWAIGNQTCEAARRNPNPDPKYACISNNSDCFNSSNGPGYICKCKEGFHGNPYLDDPELGCKDINECTDWSKYPCAVPGTCVNTPGAFKCVCPPGYPKGNAQNGTCERDQLPLSSGAKIAIGGQNMFSQATD
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | None | None | None |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_04g0369600 | RBH | 0.844820 | 0.0 | 0.0 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os04g30110 | RBH | 0.197255 | 0.0 | 0.0 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os04g0371100 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_04g0010010 | RBH | 0.0 | 5.388364 | 0.0 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_04g0010770 | RBH | 0.0 | 0.0 | 0.0 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_04g0010420 | SBH | 0.0 | 0.0 | 0.0 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_04g0010170 | RBH | 0.0 | 0.0 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_04g0010240 | SBH | 0.0 | 0.0 | 0.0 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_04G0294000 | SBH | 0.41305 | 0.364212 | 0.0104925 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_04g0010090 | SBH | 0.0 | 0.0 | 0.0 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_04G0278200 | SBH | 0 | 0 | 0.222737 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_04g0010220 | SBH | 0.0 | 0.0 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_04g0010200 | SBH | 0.0 | 1.197872 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_04g0010250 | SBH | 0.0 | 0.0 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_04g0010750 | SBH | 0.000000 | 0.0 | 0.304672 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_04g0010330 | RBH | 0.0 | 1.423686 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_04G009470 | RBH | 0.0 | 0.0 | 0.0 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_04g0009500 | RBH | 0.0 | 6.665733 | 0.0 |
